prot_H-elongata_contig81468.15815.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig81468.15815.1
Unique Nameprot_H-elongata_contig81468.15815.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length91
Homology
BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A6H5KET6_9PHAE (UV excision repair protein RAD23 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KET6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 8.340e-21
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0
Query:   37 QQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFENAL 89
            Q VTVELT+EE+AAVQNLMAMVPG GRD+VIEAFIACDKNAEMAANLLFENAL
Sbjct:  364 QTVTVELTEEEDAAVQNLMAMVPGAGRDQVIEAFIACDKNAEMAANLLFENAL 416          
BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A836CLA0_9STRA (UV excision repair protein RAD23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.300e-10
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 0
Query:   24 GEQQQEGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFE 86
            GEQQ+      S Q  T  LT E+NAAV  LMA+VP + R RVIEA+++CDKN E A N+LF+
Sbjct:  163 GEQQESMDAGGSDQAPTAALTAEDNAAVDQLMAIVPNMSRQRVIEAYLSCDKNVEYAMNMLFD 225          
BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A1Y1UUG4_9TREE (UV excision repair protein RAD23 n=1 Tax=Kockovaella imperatae TaxID=4999 RepID=A0A1Y1UUG4_9TREE)

HSP 1 Score: 57.8 bits (138), Expect = 9.930e-8
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 0
Query:   29 EGADVLSGQQVT-VELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFEN 87
            +G D + GQQ T + LTQEE AAV+ L A+  G  R  V++A++ACDKN E+AAN LFEN
Sbjct:  361 DGDDDMLGQQTTQINLTQEEAAAVERLEAL--GFDRAMVLQAYMACDKNEELAANFLFEN 418          
BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A7S3FCZ8_9VIRI (Ubiquitin receptor RAD23 n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FCZ8_9VIRI)

HSP 1 Score: 56.2 bits (134), Expect = 1.160e-7
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 0
Query:    6 AEDEESPLVIGDGRSGGRGEQQQEGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFENAL 89
            A +++S   +  G  GG G+   EG  V     V +ELT+E+ A V  LMAM  G     V++A++ACDKN ++AAN LFE+ +
Sbjct:   99 AAEQQSMAAMMAGALGGEGDMDAEGPGV-----VNIELTEEDRANVDTLMAM--GFSEAAVVQAYLACDKNPDLAANYLFEHGM 175          
BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A4Q9Q3I7_9APHY (UV excision repair protein RAD23 n=2 Tax=Dichomitus squalens TaxID=114155 RepID=A0A4Q9Q3I7_9APHY)

HSP 1 Score: 56.6 bits (135), Expect = 2.510e-7
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0
Query:   10 ESPLVIGDGRSGGRGEQQQEGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFENA 88
            ++P ++    SG    +  EG D+  G QV V +T+EE AA++ L A+  G  R  VIEA+ ACDKN E+AAN LF+ A
Sbjct:  314 QNPEMLAQLLSGALAGEGDEGGDIPPGAQV-VHVTEEERAAIERLEAL--GFPRQAVIEAYFACDKNEELAANYLFDGA 389          
BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A0D7AFL8_9AGAR (UV excision repair protein RAD23 n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7AFL8_9AGAR)

HSP 1 Score: 56.6 bits (135), Expect = 2.520e-7
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0
Query:   29 EGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFENALL 90
            EG +V  G  V V +T EENAA+Q L A+  G  R   IEA++ACDKN E+AAN LFEN  +
Sbjct:  352 EGGEVPPGTHV-VNVTPEENAAIQRLEAL--GFPRQLAIEAYLACDKNEELAANYLFENGFM 410          
BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A371D609_9APHY (UV excision repair protein RAD23 n=2 Tax=Polyporus TaxID=5637 RepID=A0A371D609_9APHY)

HSP 1 Score: 56.2 bits (134), Expect = 3.430e-7
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 0
Query:    1 MEQEYAEDEESPLVIGDGRSGGRGEQQQEGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFENA 88
            + Q+ A D E+ L +  G      E  +EG  +  G QV +++T+EE AA++ L A+  G  R  VIEA+ ACDKN EMAAN LF++A
Sbjct:  310 LAQQMAADPEALLQLLGGM-----EDDEEGGGLPPGAQV-IQVTEEERAAIERLEAL--GFPRQAVIEAYFACDKNEEMAANYLFDSA 389          
BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A167PM91_CALVF (UV excision repair protein RAD23 n=2 Tax=Calocera TaxID=29888 RepID=A0A167PM91_CALVF)

HSP 1 Score: 56.2 bits (134), Expect = 3.430e-7
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 0
Query:   40 TVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFEN 87
            T+++T EEN+A++ L+A+  G  RD VI+A+ ACDKN E+AAN LFEN
Sbjct:  350 TIQVTPEENSAIERLIAL--GFPRDIVIQAYFACDKNEELAANYLFEN 395          
BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A851US54_9PASS (UV excision repair protein RAD23 (Fragment) n=1 Tax=Elachura formosa TaxID=1463973 RepID=A0A851US54_9PASS)

HSP 1 Score: 55.1 bits (131), Expect = 4.600e-7
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 0
Query:   21 GGRGEQQQEGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFE 86
            GG G++  E  D++  Q + V LTQEE AAV+ L A+  G  R  V++A++ CDKN E+AAN LF+
Sbjct:  140 GGAGDEGDEDDDMMGPQVMHVNLTQEEAAAVERLEAL--GFDRQLVLQAYMLCDKNEELAANFLFD 203          
BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Match: A0A0C3KKP1_PISTI (UV excision repair protein RAD23 n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3KKP1_PISTI)

HSP 1 Score: 55.1 bits (131), Expect = 5.380e-7
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 0
Query:   29 EGADVLSGQQVTVELTQEENAAVQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFEN 87
            EG D+  G QV V +T EE AA++ LMA+  G  R++  +A+ ACDKN E+AAN LFEN
Sbjct:  167 EGGDLPPGVQV-VNVTPEEQAAIERLMAL--GFTREQAAQAYFACDKNEELAANYLFEN 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81468.15815.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KET6_9PHAE8.340e-2190.57UV excision repair protein RAD23 n=2 Tax=Ectocarpu... [more]
A0A836CLA0_9STRA7.300e-1053.97UV excision repair protein RAD23 n=1 Tax=Tribonema... [more]
A0A1Y1UUG4_9TREE9.930e-855.00UV excision repair protein RAD23 n=1 Tax=Kockovael... [more]
A0A7S3FCZ8_9VIRI1.160e-740.48Ubiquitin receptor RAD23 n=1 Tax=Prasinoderma sing... [more]
A0A4Q9Q3I7_9APHY2.510e-744.30UV excision repair protein RAD23 n=2 Tax=Dichomitu... [more]
A0A0D7AFL8_9AGAR2.520e-753.23UV excision repair protein RAD23 n=1 Tax=Fistulina... [more]
A0A371D609_9APHY3.430e-743.18UV excision repair protein RAD23 n=2 Tax=Polyporus... [more]
A0A167PM91_CALVF3.430e-756.25UV excision repair protein RAD23 n=2 Tax=Calocera ... [more]
A0A851US54_9PASS4.600e-746.97UV excision repair protein RAD23 (Fragment) n=1 Ta... [more]
A0A0C3KKP1_PISTI5.380e-752.54UV excision repair protein RAD23 n=1 Tax=Pisolithu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004806UV excision repair protein Rad23PRINTSPR01839RAD23PROTEINcoord: 41..57
score: 35.83
coord: 60..74
score: 46.97
coord: 75..90
score: 42.9
IPR015940Ubiquitin-associated domainSMARTSM00165uba_6coord: 47..86
e-value: 5.0E-6
score: 36.0
IPR015940Ubiquitin-associated domainPFAMPF00627UBAcoord: 46..84
e-value: 2.1E-8
score: 33.9
IPR015940Ubiquitin-associated domainPROSITEPS50030UBAcoord: 44..87
score: 9.487
NoneNo IPR availableGENE3D1.10.8.10coord: 37..88
e-value: 1.6E-19
score: 71.6
IPR009060UBA-like superfamilySUPERFAMILY46934UBA-likecoord: 32..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81468contigH-elongata_contig81468:1220..1730 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81468.15815.1mRNA_H-elongata_contig81468.15815.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig81468 796..2035 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig81468.15815.1 ID=prot_H-elongata_contig81468.15815.1|Name=mRNA_H-elongata_contig81468.15815.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MEQEYAEDEESPLVIGDGRSGGRGEQQQEGADVLSGQQVTVELTQEENAA
VQNLMAMVPGVGRDRVIEAFIACDKNAEMAANLLFENALL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004806Rad23
IPR015940UBA
IPR009060UBA-like_sf