mRNA_H-elongata_contig81449.15813.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81449.15813.1
Unique NamemRNA_H-elongata_contig81449.15813.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81449.15813.1 vs. uniprot
Match: A0A6H5KPC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.040e-14
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    4 PYNVMVINRSHQANFATLYVDGQKVVKKIVKPQEHIIFKGIPAEDGIRELLFSLPR 171
            PY V V N S + NFA LYVDGQK+ +K V   + +IF+GIP E+GI+ELLFSLPR
Sbjct:   66 PYTVAVRNNSGKGNFAQLYVDGQKIAEKYVPAGDSVIFEGIPTEEGIQELLFSLPR 121
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BLAST of mRNA_H-elongata_contig81449.15813.1 vs. uniprot
Match: D8LLM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM6_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 3.130e-11
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    4 PYNVMVINRSHQANFATLYVDGQK----------VVKKIVKPQEHIIFKGIPAEDGIRELLFSLPR 171
            PY V V N S + NFA LYVDGQK          V +K V   + +IF+GIP E+GI+ELLFSLPR
Sbjct:   54 PYTVAVRNNSGKGNFAQLYVDGQKGLATGADTTAVAEKYVPAGDSVIFEGIPTEEGIQELLFSLPR 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81449.15813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPC9_9PHAE4.040e-1460.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLM6_ECTSI3.130e-1153.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81449contigH-elongata_contig81449:124..1078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue3.6e-07
Seed eggNOG ortholog2880.D8LLM6
EggNOG OGs2ERJ9@1,2SUBW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_005160.1
Exons2
Model size171
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81449.15813.1prot_H-elongata_contig81449.15813.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81449 124..1063 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.5599432-CDS-H-elongata_contig81449:123..2191622931222.5599432-CDS-H-elongata_contig81449:123..219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81449 124..219 -
1691679748.2763724-CDS-H-elongata_contig81449:123..2191691679748.2763724-CDS-H-elongata_contig81449:123..219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81449 124..219 -
1622931222.5738454-CDS-H-elongata_contig81449:1003..10631622931222.5738454-CDS-H-elongata_contig81449:1003..1063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81449 1004..1063 -
1691679748.2876868-CDS-H-elongata_contig81449:1003..10631691679748.2876868-CDS-H-elongata_contig81449:1003..1063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81449 1004..1063 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.585643-UTR-H-elongata_contig81449:1063..10781622931222.585643-UTR-H-elongata_contig81449:1063..1078Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81449 1064..1078 -
1691679748.2977204-UTR-H-elongata_contig81449:1063..10781691679748.2977204-UTR-H-elongata_contig81449:1063..1078Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81449 1064..1078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81449.15813.1

>prot_H-elongata_contig81449.15813.1 ID=prot_H-elongata_contig81449.15813.1|Name=mRNA_H-elongata_contig81449.15813.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MVINRSHQANFATLYVDGQKVVKKIVKPQEHIIFKGIPAEDGIRELLFSL
PR
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mRNA from alignment at H-elongata_contig81449:124..1078-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81449.15813.1 ID=mRNA_H-elongata_contig81449.15813.1|Name=mRNA_H-elongata_contig81449.15813.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=955bp|location=Sequence derived from alignment at H-elongata_contig81449:124..1078- (Himanthalia elongata Himel1 dioecious)
TGCCCCTACAATGTGATGGTGATCAACCGCTCCCACCAGGCCAACTTCGC
CACCCTCTACGTCGACGGACAGAAGGTGAGGCTGAGCAGGACTTAGCAGA
GCGGCCGCCGCAGCTCATTCAGGGCGTGGCTCCGCCACAGCTCGTTCGTG
TTCGTACGGTATTCCCCGAAGGTTCATTGCGGTCGTTCTATCGAAACACG
GGCCCTTGTGCCCGGTGCCTTTGCTTGGCATCTTAGGAGCTGCTCGGAGG
GAGAGAGGGAAGAGTGGGGTGTGGATGTTTCCTGTCAACCCGCATACTGT
GCAAAAAATATTGCTCATTTCAGTCTTTGAGTGGTATAAACTATGTGGCG
TACAGTAGCGCGCATGTGTCTCTCGGTGTTTTTGCTCGCTGTGAAGATCA
TTATTATACTCCCATGTATATAGATACAAATATATATATATATATATCTG
TAGTCTACATATTTAATCTTTGAGCCGAGGACTCCTGCTTCAAGCGCTTC
AGACACAGATATAGACACACAACCAATCCACATATTGGACGGGGAGGCGT
AACATAATTGTCGCCACTTTCCGGAGGGAAGGGTCCAAATGCATCCCCTT
AGGGGGATCCAATCATCGTAGCCCCGGTCGTAGCACTTCACATGGGATAT
CTGGTTACAATACAAAAGGGGATGGAGATACGTTTTGTCCCCAGGAGGGG
AAGAGTTAAATACGTCCCCTCCACGAACCGGGGGCGTTTTAGCAAGTTCG
CCCCTCCCCCCTACCGTGCTTGGCTTCGTCGATGATTTTAAGGGGGAACC
TTGCTTGCTTTTTTGTCTTCCCCTCGCCCACATTGGTCTGTTGTTGTAAT
GCCACACAGGTGGTAAAAAAGATTGTCAAGCCCCAGGAGCACATCATTTT
CAAAGGAATTCCTGCTGAGGACGGTATCCGGGAGCTGCTCTTCTCCCTAC
CAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig81449:124..1078-

>mRNA_H-elongata_contig81449.15813.1 ID=mRNA_H-elongata_contig81449.15813.1|Name=mRNA_H-elongata_contig81449.15813.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig81449:124..1078- (Himanthalia elongata Himel1 dioecious)
ATGGTGATCAACCGCTCCCACCAGGCCAACTTCGCCACCCTCTACGTCGA
CGGACAGAAGATGGTGATCAACCGCTCCCACCAGGCCAACTTCGCCACCC
TCTACGTCGACGGACAGAAGGTGGTAAAAAAGATTGTCAAGCCCCAGGAG
CACATCATTTTCAAAGGAATTCCTGCTGAGGACGGTATCCGGGAGCTGCT
CTTCTCCCTACCAAGGGTGGTAAAAAAGATTGTCAAGCCCCAGGAGCACA
TCATTTTCAAAGGAATTCCTGCTGAGGACGGTATCCGGGAGCTGCTCTTC
TCCCTACCAAGG
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