mRNA_H-elongata_contig81434.15810.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81434.15810.1
Unique NamemRNA_H-elongata_contig81434.15810.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig81434.15810.1 vs. uniprot
Match: A0A6H5KX61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX61_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 6.860e-19
Identity = 61/126 (48.41%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:    1 LPKQIMVGIAHAQAKAEKSAATHGNVPENVPPEEDSRDTGDEPSANDATGAATATTVAAKKSIK--VAAVTYAWCLHAYLLTRDGARQLVSRMPVSAPADIFVASFLTGTDSGRPVLAGRAVLPAI 372
            LP  IM GIA A    + +A  +G V E     + +  T   P+ + A             ++   VA VT+AW LHAYLLTR  A +L + +PVSAPADIFVAS LT TDSGRPVLAGRAVLPA+
Sbjct:  328 LPVPIMDGIARASKTKKNAANGNGGVEEGGGATDTATTTDGAPAGDTAAXXXXXXXXXXXXALGLVVAPVTFAWGLHAYLLTRPAAARLANSLPVSAPADIFVASMLTSTDSGRPVLAGRAVLPAL 453
[Close]
BLAST of mRNA_H-elongata_contig81434.15810.1 vs. uniprot
Match: D8LCR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR1_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.750e-18
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:  193 VAAVTYAWCLHAYLLTRDGARQLVSRMPVSAPADIFVASFLTGTDSGRPVLAGRAVLPAI 372
            VA VT+AW LHAYLLTR  A +L + +PVSAPADIFVAS LT TDSGRPVLAGRAVLPA+
Sbjct:  967 VAPVTFAWGLHAYLLTRPAATRLSNSLPVSAPADIFVASMLTSTDSGRPVLAGRAVLPAL 1026
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81434.15810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX61_9PHAE6.860e-1948.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCR1_ECTSI3.750e-1876.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81434contigH-elongata_contig81434:1235..1651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size402
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.3645291-CDS-H-elongata_contig81434:1234..16361622931222.3645291-CDS-H-elongata_contig81434:1234..1636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81434 1235..1636 -
1691679748.1812994-CDS-H-elongata_contig81434:1234..16361691679748.1812994-CDS-H-elongata_contig81434:1234..1636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81434 1235..1636 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.3794582-UTR-H-elongata_contig81434:1636..16511622931222.3794582-UTR-H-elongata_contig81434:1636..1651Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81434 1637..1651 -
1691679748.1900997-UTR-H-elongata_contig81434:1636..16511691679748.1900997-UTR-H-elongata_contig81434:1636..1651Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81434 1637..1651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81434.15810.1prot_H-elongata_contig81434.15810.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81434 1235..1636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81434.15810.1

>prot_H-elongata_contig81434.15810.1 ID=prot_H-elongata_contig81434.15810.1|Name=mRNA_H-elongata_contig81434.15810.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MVGIAHAQAKAEKSAATHGNVPENVPPEEDSRDTGDEPSANDATGAATAT
TVAAKKSIKVAAVTYAWCLHAYLLTRDGARQLVSRMPVSAPADIFVASFL
TGTDSGRPVLAGRAVLPAIVKAPQGKGDVESLVA
back to top

mRNA from alignment at H-elongata_contig81434:1235..1651-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81434.15810.1 ID=mRNA_H-elongata_contig81434.15810.1|Name=mRNA_H-elongata_contig81434.15810.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig81434:1235..1651- (Himanthalia elongata Himel1 dioecious)
CTCCCTAAACAGATCATGGTCGGGATCGCCCACGCACAGGCCAAGGCGGA
GAAGTCCGCCGCCACCCATGGGAACGTTCCCGAGAACGTTCCCCCGGAGG
AGGACTCTCGCGATACCGGCGACGAGCCCTCAGCGAACGATGCCACTGGT
GCTGCAACGGCAACAACGGTGGCAGCAAAAAAAAGTATCAAGGTGGCTGC
GGTGACCTACGCGTGGTGCCTCCACGCGTACCTGCTGACGCGAGACGGGG
CGAGGCAGCTGGTATCCCGCATGCCGGTTTCTGCCCCCGCGGACATCTTT
GTGGCCAGCTTCTTGACGGGAACGGATAGCGGCCGTCCGGTCTTGGCCGG
ACGCGCGGTCTTACCCGCCATCGTGAAAGCGCCGCAAGGAAAGGGGGACG
TGGAGTCTCTGGTCGCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig81434:1235..1651-

>mRNA_H-elongata_contig81434.15810.1 ID=mRNA_H-elongata_contig81434.15810.1|Name=mRNA_H-elongata_contig81434.15810.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig81434:1235..1651- (Himanthalia elongata Himel1 dioecious)
ATGGTCGGGATCGCCCACGCACAGGCCAAGGCGGAGAAGTCCGCCGCCAC
CCATGGGAACGTTCCCGAGAACGTTCCCCCGGAGGAGGACTCTCGCGATA
CCGGCGACGAGCCCTCAGCGAACGATGCCACTGGTGCTGCAACGGCAACA
ACGGTGGCAGCAAAAAAAAGTATCAAGGTGGCTGCGGTGACCTACGCGTG
GTGCCTCCACGCGTACCTGCTGACGCGAGACGGGGCGAGGCAGCTGGTAT
CCCGCATGCCGGTTTCTGCCCCCGCGGACATCTTTGTGGCCAGCTTCTTG
ACGGGAACGGATAGCGGCCGTCCGGTCTTGGCCGGACGCGCGGTCTTACC
CGCCATCGTGAAAGCGCCGCAAGGAAAGGGGGACGTGGAGTCTCTGGTCG
CGATGGTCGGGATCGCCCACGCACAGGCCAAGGCGGAGAAGTCCGCCGCC
ACCCATGGGAACGTTCCCGAGAACGTTCCCCCGGAGGAGGACTCTCGCGA
TACCGGCGACGAGCCCTCAGCGAACGATGCCACTGGTGCTGCAACGGCAA
CAACGGTGGCAGCAAAAAAAAGTATCAAGGTGGCTGCGGTGACCTACGCG
TGGTGCCTCCACGCGTACCTGCTGACGCGAGACGGGGCGAGGCAGCTGGT
ATCCCGCATGCCGGTTTCTGCCCCCGCGGACATCTTTGTGGCCAGCTTCT
TGACGGGAACGGATAGCGGCCGTCCGGTCTTGGCCGGACGCGCGGTCTTA
CCCGCCATCGTGAAAGCGCCGCAAGGAAAGGGGGACGTGGAGTCTCTGGT
CGCG
back to top