mRNA_H-elongata_contig81405.15804.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81405.15804.1
Unique NamemRNA_H-elongata_contig81405.15804.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig81405.15804.1 vs. uniprot
Match: D7FSQ0_ECTSI (VDE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ0_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 6.140e-40
Identity = 65/88 (73.86%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:    1 FYISCVSRNVQVDPEDSPRTFHTDGKLFGLTFKENWYVTGHSTKVGAEFVFVQYRGHTLQGSYEGGFVFSRKPFLAASAMPKIARVAR 264
            F+ + ++  +QVDP DSPRTFHTDGKLFGL+FKENWYVTGHST  G EFVFVQYRGHTLQGSY+GGFV++RKP+L  SA+ K+ARVAR
Sbjct:  205 FWENTITETLQVDPADSPRTFHTDGKLFGLSFKENWYVTGHSTDPGEEFVFVQYRGHTLQGSYDGGFVYARKPYLPKSALAKVARVAR 292
[Close]
BLAST of mRNA_H-elongata_contig81405.15804.1 vs. uniprot
Match: A0A6H5JEL1_9PHAE (VDE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL1_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.630e-38
Identity = 64/88 (72.73%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:    1 FYISCVSRNVQVDPEDSPRTFHTDGKLFGLTFKENWYVTGHSTKVGAEFVFVQYRGHTLQGSYEGGFVFSRKPFLAASAMPKIARVAR 264
            F+ + ++  +QVDP DSPRTFHTDGKLFGL+FKENWYVTGHST  G EFVFVQYRGHTLQGSY+GGFV++RKP+L  SA+ K+A+VAR
Sbjct:  362 FWENTITETLQVDPADSPRTFHTDGKLFGLSFKENWYVTGHSTDPGEEFVFVQYRGHTLQGSYDGGFVYARKPYLPKSALAKVAKVAR 449
[Close]
BLAST of mRNA_H-elongata_contig81405.15804.1 vs. uniprot
Match: A0A835YUF5_9STRA (Violaxanthin de-epoxidase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUF5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.540e-27
Identity = 51/90 (56.67%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    1 FYISCVSRNVQVDPEDSPRTFHTDGKLFGLTFKENWYVTGHSTKVGAEFVFVQYRGHTLQGSYEGGFVFSRKPFL---AASAMPKIARVA 261
            F+ + +S  +++DP  +PRTFHT+GK+FGLTF+ENWYV     + GAEFV V+YRGHTLQG+Y+GGFV++R+P L   AA+A+   ARVA
Sbjct:  207 FWQNRLSERLEIDPPGAPRTFHTEGKMFGLTFRENWYVAAAGAEPGAEFVLVRYRGHTLQGTYDGGFVYAREPALPQRAAAAVRDAARVA 296
[Close]
BLAST of mRNA_H-elongata_contig81405.15804.1 vs. uniprot
Match: A0A7S3UV38_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV38_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 5.140e-20
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 FYISCVSRNVQVDPEDSPRTFHTDGKLFGLTFKENWYVTGHSTKVGAE---FVFVQYRGHTLQGSYEGGFVFSRKPFLAASAMPKIARVAR 264
            +Y + +S  + VDP  +PRT HT G++FGLTF ENWY+ G +     E   + FV Y GHTLQG+Y+G FV++++P   AS +P + R AR
Sbjct:   38 YYENNLSEEMVVDPPGAPRTLHTVGRMFGLTFWENWYIIGENDPGNPEEAPWKFVYYTGHTLQGNYKGAFVYAKEPAAPASILPGVQRAAR 128
[Close]
BLAST of mRNA_H-elongata_contig81405.15804.1 vs. uniprot
Match: A0A7S0INQ6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0INQ6_9EUKA)

HSP 1 Score: 90.9 bits (224), Expect = 1.150e-19
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:   49 SPRTFHTDGKLFGLTFKENWYVTGHSTKVGAEFVFVQYRGHTLQGSYEGGFVFSRKPFLAASAMPKIARVAR 264
            S RT HT+GK+FGLTF ENWYV G ++K  A F FV Y G TLQ  YEG FV++RKP L A++MP I R+AR
Sbjct:  214 SRRTAHTEGKMFGLTFWENWYVIGENSKQEAPFKFVYYTGKTLQNRYEGAFVYARKPELPAASMPHIYRLAR 285
[Close]
BLAST of mRNA_H-elongata_contig81405.15804.1 vs. uniprot
Match: A0A7S0LH61_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LH61_9EUKA)

HSP 1 Score: 90.5 bits (223), Expect = 2.300e-19
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 FYISCVSRNVQVDPED-SPRTFHTDGKLFGLTFKENWYVTGHSTKVGAEFVFVQYRGHTLQGSYEGGFVFSRKPFLAASAMPKIARVAR 264
            ++   +  N+  D +  S RT HT+GK+FGLTF ENWYV G ++K   +F FV Y G TLQ  YEG FV++RKP L A++MP I R+AR
Sbjct:  267 YFRQTLHENLVFDEQPGSRRTAHTEGKMFGLTFWENWYVIGENSKQEPQFKFVYYTGKTLQNRYEGAFVYARKPELPAASMPHIYRLAR 355
[Close]
BLAST of mRNA_H-elongata_contig81405.15804.1 vs. uniprot
Match: A0A7S3T481_9SPIT (Hypothetical protein n=3 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3T481_9SPIT)

HSP 1 Score: 87.4 bits (215), Expect = 2.690e-18
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   49 SPRTFHTDGKLFGLTFKENWYVTGHSTKVGAEFVFVQYRGHTLQGSYEGGFVFSRKPFLAASAMPKIARVAR 264
            S RT HT+GK+FGLTF ENWYV G + +    F FV Y G TLQ  YEG FV++RKP L ASAMP I ++AR
Sbjct:  256 SHRTAHTEGKMFGLTFWENWYVIGTNDRSEDSFRFVYYTGKTLQNKYEGAFVYARKPELPASAMPHIYKLAR 327
[Close]
BLAST of mRNA_H-elongata_contig81405.15804.1 vs. uniprot
Match: R1DNE5_EMIHU (Violaxanthin de-epoxidase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DNE5_EMIHU)

HSP 1 Score: 84.0 bits (206), Expect = 5.110e-17
Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:   49 SPRTFHTDGKLFGLTFKENWYVTGHSTKVGAEFVFVQYRGHTLQGSYEGGFVFSRKPFLAASAMPKIARVAR 264
            S RT HT+GK+FGLTF ENWYV G + +    F  V Y G TLQ  YEG FV++RKP L ASAMP I  +AR
Sbjct:  285 SHRTAHTEGKMFGLTFWENWYVIGANDRGEDAFRIVYYTGKTLQNKYEGAFVYARKPDLPASAMPHIYSIAR 356
[Close]
BLAST of mRNA_H-elongata_contig81405.15804.1 vs. uniprot
Match: A0A7S3APN8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3APN8_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 1.320e-16
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:   49 SPRTFHTDGKLFGLTFKENWYVTGHSTKVGAEFVFVQYRGHTLQGSYEGGFVFSRKPFLAASAMPKIARVAR 264
            S RT HT+GK+FGLTF ENWYV G +     +F FV Y G TLQ  YEG FV+SR P L   AMP I ++AR
Sbjct:  293 SRRTAHTEGKMFGLTFWENWYVIGANKVNEPQFRFVYYTGKTLQNRYEGAFVYSRTPELPRDAMPSIYKIAR 364
[Close]
BLAST of mRNA_H-elongata_contig81405.15804.1 vs. uniprot
Match: A0A7S2NZ74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZ74_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.780e-16
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 FYISCVSRNVQVDPE---DSP--RTFHTDGKLFGLTFKENWYVTGHS--TKVGAEFVFVQYRGHTLQGSYEGGFVFSRKPFLAASAMPKI 249
            F+ + ++ ++ VD     D+P  RT HT+GK++GL F ENWY+ G S  +K    F  V Y+GHTLQG+YEG FV++++P L A+A+P +
Sbjct:  155 FWENSLTEHMVVDAVSNGDNPTGRTMHTEGKMYGLKFNENWYIVGESDGSKDVPPFKLVAYKGHTLQGNYEGAFVYAKEPVLPAAAIPAV 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81405.15804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSQ0_ECTSI6.140e-4073.86VDE domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JEL1_9PHAE1.630e-3872.73VDE domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YUF5_9STRA3.540e-2756.67Violaxanthin de-epoxidase-domain-containing protei... [more]
A0A7S3UV38_HETAK5.140e-2046.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0INQ6_9EUKA1.150e-1961.11Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0LH61_9EUKA2.300e-1950.56Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S3T481_9SPIT2.690e-1859.72Hypothetical protein n=3 Tax=Choreotrichia TaxID=1... [more]
R1DNE5_EMIHU5.110e-1758.33Violaxanthin de-epoxidase n=2 Tax=Emiliania huxley... [more]
A0A7S3APN8_9EUKA1.320e-1656.94Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2NZ74_9STRA1.780e-1644.44Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81405contigH-elongata_contig81405:31..2716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue4.2e-32
Seed eggNOG ortholog2880.D7FSQ0
Preferred nameVDL1
KEGG rclassRC01624,RC03037
KEGG koko:K09839
KEGG ReactionR07178,R07179,R10055
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
EggNOG free text desc.VDE lipocalin domain
EggNOG OGs28K1H@1,2RY6Z@2759
EC1.23.5.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionviolaxanthin de-epoxidase-like protein of unknown function
Ec32 orthologEc-03_002990.1
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931221.8530996-CDS-H-elongata_contig81405:30..1371622931221.8530996-CDS-H-elongata_contig81405:30..137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81405 31..137 +
1691679747.8925138-CDS-H-elongata_contig81405:30..1371691679747.8925138-CDS-H-elongata_contig81405:30..137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81405 31..137 +
1622931221.879136-CDS-H-elongata_contig81405:2559..27161622931221.879136-CDS-H-elongata_contig81405:2559..2716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81405 2560..2716 +
1691679747.9080844-CDS-H-elongata_contig81405:2559..27161691679747.9080844-CDS-H-elongata_contig81405:2559..2716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81405 2560..2716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81405.15804.1prot_H-elongata_contig81405.15804.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81405 31..2716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81405.15804.1

>prot_H-elongata_contig81405.15804.1 ID=prot_H-elongata_contig81405.15804.1|Name=mRNA_H-elongata_contig81405.15804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
FYISCVSRNVQVDPEDSPRTFHTDGKLFGLTFKENWYVTGHSTKVGAEFV
FVQYRGHTLQGSYEGGFVFSRKPFLAASAMPKIARVAR
back to top

mRNA from alignment at H-elongata_contig81405:31..2716+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81405.15804.1 ID=mRNA_H-elongata_contig81405.15804.1|Name=mRNA_H-elongata_contig81405.15804.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2686bp|location=Sequence derived from alignment at H-elongata_contig81405:31..2716+ (Himanthalia elongata Himel1 dioecious)
TTTTATATCTCCTGTGTTTCTCGCAACGTGCAGGTGGATCCGGAGGACTC
CCCTCGCACCTTTCACACTGACGGCAAGCTGTTCGGCCTCACCTTCAAGG
AAAACTGGTGAGGGGAGACTGGACCCGCGCTGATCTTTCGGATTGGAAAA
CTGGACGTTCTGATGTTGTTTTTGTGGCTGATGTAGTATGTCGTTTGCTT
GTTAATTTTGACTCACACGTATATAAATATATATATATATATATATATAT
ACACACAAGAGAAAGCGGCGGGGCCCACTCCCGCCCGTGGAATGCCTCCT
TAGGAAGGAAATTAAGATGGTAAACAGGATAATGGAGGATTAAATGGTGG
CGATATGTTGACTATCATGGGACTTTAAATTACACTGGCCTCTCTTTCTC
GCATGTTATATTCGTAGCGTTTGTTCCCCTCGCTGCCTCGGCAAGGTCTG
CTCTATCATGACCCATAGCGAGTGGGGAAGGTCTTTCTAGCGGAGTAAGG
CTGGAGTCACCTTCGAGGAGCGTATCTGTGTGCAGTGGTCGAATGTCCGT
TGAATGAAGAGGATATATCGTTTGTACTACTTATCATTGAACTGGGAAAA
GGCTGGTACCCTTGGCGTAGTGGAAAAAAAACAGTCGTTGCTTATACGCC
TCAAAGCGAAGGTGCTGAATGAGCGCCTCATGACTCGGGTGCAGCAAGAC
GGCCAAACGCCGCCGTGGCTTTGGCGCTACCGACGGTGATCCCGCCCGGA
CCGAGGTTTCCCCCCCACTAGCGGACTCTGGTTCGGCTGATGTGGGCCTG
CGAGAAGGGGAGTCACGCCTGGGGGGAAGCATGAGTCTGGAACCAGAAGG
CACGATGGAGCCCGCTCTGCTCCGGGAGAGTCTCGCTCGACAGCGCCAAA
GCGCCACGAGAGAAGTACCACTGTGCAGGTTGCAAAGAACGCCTGACGGT
AGTGCGTTCTCTGTCGTTCACCCGCGGGGGTCTGATGAACCAGAAGGGCC
TAACTCATCGACGTCACGGTCGTCAGCCCCAAGCGCACCTTGCAGCTGGT
TACCTCCGCCCGACGGGGGGACAATGCCCTTCGCTTGTCGAAGAAGCGCA
AGATTGAAACGTATCGAGAACCCTTTGATCCCGTTACCTGCACCCTTCAG
ACTCTTGCGTTCTCCACCTGCGGTGATCTCGGCAAAAACACACCACAAAA
TTTGACCAGACCGTCGCGACCCAGCGGGTGCTCAAGCAAGGGTATCTGGA
GGGTGATCAATTAGCAGCGGCACGGGGACAAGAGAGGGCAATACGTCGGC
GACACTCATACTTCGTCCTGAACCGGGCACTTTCCGTGACGACCCGTGAG
GCTATGGCCCAAGCCGTTGGTCGACCAGCCACGGAGCCAGCGGAAAATCT
AGCCCTAGCGATGATCAAGGGTGCAAGGTTTCGCGCCATCGCAGTGGTAG
TGGCGGATGTATCCGCAGTAGCTGCCGCGGTGACGAGGGTGGCGGAGGAC
GGAGTTGAAAGGAGCCTCGCTCCGTCGGTACTGACCGAAGGCAAGGAACC
GATCACCCCGGAAGCAGCCGCACGGCTAGTGGAAGTGACGATGGGGCATT
CAGGGACTGGCGCGGACGCGGTTGCGGCGACCACAATACCTGCGCAGGCG
AACGCTGTCGCGATGACGTCTGTTGTAGGAATTGATGGGGGAGGATACAC
CCGTCGCCGACGCTGTAGCGCCGAGGGAGGGGGCGGGAGGGCTCGAGGCG
TGAGCACTCGCTGCCACAGTGGCGAATGCGGTTGCGTTGGTAACGATAGT
AGCGATGGTGGCCGTCCTGTAAGCGACGATAATTCGCCAGATTGGAAACG
GGATGGAGGTCTCAACCGAGCTGGGAATACAGGGGGGTGGGGCCGTAGCG
GCATTCGAAATGCTAACGTCACGGAGTGTTGCGCCAAGAGGTGGGACATC
GAGGGCAGAAGGGAGAGTTGCAGAGGTACTCCGGCGTGGTTGCGTAAGCA
ACGCGAGTAGGATAGGCCAATCCAAGGCCTTCAGGGATAGCTCCCCGTAA
GGGGGGGGTATTTGCAAACCGGCACGGCGCCCCCTTACGTGTCATGCCGG
TTTGCGTGGTCTAATGCAAATTGATAAAGAGAGACGTAAACCTTGTGGTA
AAGGTACTTTTGAATAGCATGGGATGGGAAAACCAGACGAAGATGTCATT
AATATAATAACACCTCCACATGACTCGTAATATCTCTCCCCCTCCCCCTC
ACCGCCTCTCACGGCTTATCAAACTCCGTCGATTCCCCCTAGATCCCCCG
TGTTTTTCGCTCTTTCTCCCTACCCCCGTACTTTTTACTCTTTCTTCACC
GCCTCTCACGGCGTGTCGAGCCCCCGCGATTTCCTCCACACCCCCCGTGA
TGTTCCTCGACTCCCTCCCCACCCCCCCTTTAATCCCTTTCCTGCCCCCC
CCCTCTCCTCACCCCCTAATCATCGTATTCTGGGTGCCTTGAATATTCTC
GACCGCGCCTCCGACTCTACCGGCGATAGGTACGTGACGGGGCATTCGAC
CAAAGTCGGTGCGGAGTTCGTATTCGTGCAGTACAGAGGACACACCCTAC
AGGGAAGCTACGAGGGAGGCTTCGTGTTCTCGAGGAAGCCTTTCCTGGCC
GCATCGGCGATGCCCAAAATCGCCAGGGTCGCTCGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig81405:31..2716+

>mRNA_H-elongata_contig81405.15804.1 ID=mRNA_H-elongata_contig81405.15804.1|Name=mRNA_H-elongata_contig81405.15804.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig81405:31..2716+ (Himanthalia elongata Himel1 dioecious)
TTTTATATCTCCTGTGTTTCTCGCAACGTGCAGGTGGATCCGGAGGACTC
CCCTCGCACCTTTCACACTGACGGCAAGCTGTTCGGCCTCACCTTCAAGG
AAAACTGTTTTATATCTCCTGTGTTTCTCGCAACGTGCAGGTGGATCCGG
AGGACTCCCCTCGCACCTTTCACACTGACGGCAAGCTGTTCGGCCTCACC
TTCAAGGAAAACTGGTACGTGACGGGGCATTCGACCAAAGTCGGTGCGGA
GTTCGTATTCGTGCAGTACAGAGGACACACCCTACAGGGAAGCTACGAGG
GAGGCTTCGTGTTCTCGAGGAAGCCTTTCCTGGCCGCATCGGCGATGCCC
AAAATCGCCAGGGTCGCTCGAGTACGTGACGGGGCATTCGACCAAAGTCG
GTGCGGAGTTCGTATTCGTGCAGTACAGAGGACACACCCTACAGGGAAGC
TACGAGGGAGGCTTCGTGTTCTCGAGGAAGCCTTTCCTGGCCGCATCGGC
GATGCCCAAAATCGCCAGGGTCGCTCGA
back to top