mRNA_H-elongata_contig81395.15801.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81395.15801.1
Unique NamemRNA_H-elongata_contig81395.15801.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81395.15801.1 vs. uniprot
Match: A0A6H5KLX0_9PHAE (Glutaredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX0_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 9.210e-27
Identity = 47/57 (82.46%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:   25 LIDRLVKENKVMLFMKGNKMFPQCGFSNSAIQVLRACDVEFETFDVLSDPAVRDKIK 195
            +I+RLVKENKVMLFMKGNKMFPQCGFSNSA+QVLRACDVEFET+DVL++P VR+ +K
Sbjct:   75 VIERLVKENKVMLFMKGNKMFPQCGFSNSAVQVLRACDVEFETYDVLTNPGVREAVK 131
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BLAST of mRNA_H-elongata_contig81395.15801.1 vs. uniprot
Match: A0A835Z4Q0_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q0_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.770e-24
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   28 IDRLVKENKVMLFMKGNKMFPQCGFSNSAIQVLRACDVEFETFDVLSDPAVRDKIK 195
            ID +VKENKVMLFMKGNKMFPQCGFSN+A+QVLRA DV+FETFDVLSDP +R  IK
Sbjct:   66 IDSMVKENKVMLFMKGNKMFPQCGFSNTAVQVLRASDVKFETFDVLSDPDIRQGIK 121
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BLAST of mRNA_H-elongata_contig81395.15801.1 vs. uniprot
Match: A0A6V1R5C5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R5C5_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 1.560e-21
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   22 GLIDRLVKENKVMLFMKGNKMFPQCGFSNSAIQVLRACDVEFETFDVLSDPAVRDKIK 195
            G I+ +V +NKVMLFMKG K+FPQCGFSN+A+Q+LR+ DVEF+TFDVLSDP +R  IK
Sbjct:   64 GRIENMVNDNKVMLFMKGTKIFPQCGFSNTAVQILRSLDVEFQTFDVLSDPDIRQGIK 121
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BLAST of mRNA_H-elongata_contig81395.15801.1 vs. uniprot
Match: A0A4D9CRD6_9STRA (Glutaredoxin n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRD6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.880e-21
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   28 IDRLVKENKVMLFMKGNKMFPQCGFSNSAIQVLRACDVEFETFDVLSDPAVRDKIK 195
            I  LV  NKVMLFMKG+K+FPQCGFSN+A+ +LRACD EFETFDVLSD  VR++IK
Sbjct:   17 IKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIK 72
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BLAST of mRNA_H-elongata_contig81395.15801.1 vs. uniprot
Match: W7TU87_9STRA (Glutaredoxin-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TU87_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.520e-21
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   28 IDRLVKENKVMLFMKGNKMFPQCGFSNSAIQVLRACDVEFETFDVLSDPAVRDKIK 195
            I  LV  NKVMLFMKG+K+FPQCGFSN+A+ +LRACD EFETFDVLSD  VR++IK
Sbjct:   58 IKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIK 113
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BLAST of mRNA_H-elongata_contig81395.15801.1 vs. uniprot
Match: A0A7S2V131_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V131_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.530e-20
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   28 IDRLVKENKVMLFMKGNKMFPQCGFSNSAIQVLRACDVEFETFDVLSDPAVRDKIK 195
            I  +V +N +MLFMKG ++FPQCGFSN+A+Q+LRACDVEFETFDVL DP +R  IK
Sbjct:   58 IKDMVSKNSIMLFMKGTRIFPQCGFSNTAVQILRACDVEFETFDVLEDPDIRQGIK 113
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BLAST of mRNA_H-elongata_contig81395.15801.1 vs. uniprot
Match: A0A7S0EUU3_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EUU3_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 4.210e-20
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   28 IDRLVKENKVMLFMKGNKMFPQCGFSNSAIQVLRACDVEFETFDVLSDPAVRDKIK 195
            I+ L+ E+KVMLFMKGNKMFPQCGFSN+ +Q+L AC+  FETFDVL D  VR+ IK
Sbjct:   41 IEELIGEHKVMLFMKGNKMFPQCGFSNTVVQILNACETPFETFDVLGDQRVREDIK 96
[Close]
BLAST of mRNA_H-elongata_contig81395.15801.1 vs. uniprot
Match: A0A7S4FAJ0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FAJ0_CHRCT)

HSP 1 Score: 85.5 bits (210), Expect = 5.570e-20
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   28 IDRLVKENKVMLFMKGNKMFPQCGFSNSAIQVLRACDVEFETFDVLSDPAVRDKIK 195
            I  +V+ NKVMLFMKGNKMFPQCGFSN+A+Q+L A DV +ETFDVLSD  +R+ +K
Sbjct:   45 IKEMVESNKVMLFMKGNKMFPQCGFSNTAVQILNAVDVPYETFDVLSDQDIREGVK 100
[Close]
BLAST of mRNA_H-elongata_contig81395.15801.1 vs. uniprot
Match: A0A7S0NUZ2_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NUZ2_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 9.350e-20
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   28 IDRLVKENKVMLFMKGNKMFPQCGFSNSAIQVLRACDVEFETFDVLSDPAVRDKIK 195
            I  +V ++KVMLFMKGNKMFPQCGFSN+A+Q+L AC+  FETFDVLSD  +R+ +K
Sbjct:   45 IKEMVAQHKVMLFMKGNKMFPQCGFSNTAVQILNACETPFETFDVLSDNEIREGVK 100
[Close]
BLAST of mRNA_H-elongata_contig81395.15801.1 vs. uniprot
Match: A0A7S4C1K1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C1K1_CHRCT)

HSP 1 Score: 85.5 bits (210), Expect = 9.350e-20
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   28 IDRLVKENKVMLFMKGNKMFPQCGFSNSAIQVLRACDVEFETFDVLSDPAVRDKIK 195
            I  +V+ NKVMLFMKGNKMFPQCGFSN+A+Q+L A DV +ETFDVLSD  +R+ +K
Sbjct:   45 IKEMVESNKVMLFMKGNKMFPQCGFSNTAVQILNAVDVPYETFDVLSDQDIREGVK 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81395.15801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLX0_9PHAE9.210e-2782.46Glutaredoxin domain-containing protein n=1 Tax=Ect... [more]
A0A835Z4Q0_9STRA1.770e-2482.14Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A6V1R5C5_HETAK1.560e-2168.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CRD6_9STRA1.880e-2173.21Glutaredoxin n=1 Tax=Nannochloropsis salina CCMP17... [more]
W7TU87_9STRA5.520e-2173.21Glutaredoxin-like protein n=1 Tax=Nannochloropsis ... [more]
A0A7S2V131_9STRA1.530e-2067.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0EUU3_9EUKA4.210e-2067.86Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S4FAJ0_CHRCT5.570e-2067.86Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0NUZ2_9EUKA9.350e-2066.07Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S4C1K1_CHRCT9.350e-2067.86Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81395contigH-elongata_contig81395:30..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.0
Seed ortholog evalue2.9e-14
Seed eggNOG ortholog533247.CRD_00689
Preferred namegrxD
KEGG koko:K07390
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051536,GO:0051537,GO:0051540
EggNOG free text desc.Belongs to the glutaredoxin family. Monothiol subfamily
EggNOG OGs1G6JA@1117,1HNW9@1161,COG0278@1,COG0278@2
COG Functional cat.C
BiGG ReactioniPC815.YPO2383,iYL1228.KPN_01992
Best tax levelNostocales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMonothiol glutaredoxin-related
Ec32 orthologEc-19_004050.1
Exons2
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931221.5888178-CDS-H-elongata_contig81395:29..1041622931221.5888178-CDS-H-elongata_contig81395:29..104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81395 30..104 -
1691679747.7944074-CDS-H-elongata_contig81395:29..1041691679747.7944074-CDS-H-elongata_contig81395:29..104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81395 30..104 -
1622931221.607126-CDS-H-elongata_contig81395:392..5121622931221.607126-CDS-H-elongata_contig81395:392..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81395 393..512 -
1691679747.8079636-CDS-H-elongata_contig81395:392..5121691679747.8079636-CDS-H-elongata_contig81395:392..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81395 393..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81395.15801.1prot_H-elongata_contig81395.15801.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81395 30..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81395.15801.1

>prot_H-elongata_contig81395.15801.1 ID=prot_H-elongata_contig81395.15801.1|Name=mRNA_H-elongata_contig81395.15801.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MVWRACSGLIDRLVKENKVMLFMKGNKMFPQCGFSNSAIQVLRACDVEFE
TFDVLSDPAVRDKIK
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mRNA from alignment at H-elongata_contig81395:30..512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81395.15801.1 ID=mRNA_H-elongata_contig81395.15801.1|Name=mRNA_H-elongata_contig81395.15801.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=483bp|location=Sequence derived from alignment at H-elongata_contig81395:30..512- (Himanthalia elongata Himel1 dioecious)
ATGGTTTGGAGGGCTTGCAGTGGGCTGATTGACCGGCTGGTGAAGGAGAA
CAAGGTGATGCTCTTTATGAAGGGCAACAAGATGTTCCCGCAGTGCGGTT
TCTCCAACAGCGCCATCCAGGTGGGGCGAAAGATCGGCTGCTAAGAAGGC
GTGGATGTTCGGAAAGTTTGAATGAGTTCATATATATATTTTTAAAATGA
AATATCGGTTTTGTTGTTTTGTTGTTTTGTTGTGCGTGTAGCCGTTTCGT
GTCTCACTCCAGCCGGTAGATCGGGGGCTTAGGGCGTGGGTTGGATTGGT
TGTTTGGAAGGAATTTCGCTCTTTCGAAAACCTGCGCTGTACATTCTAAA
GGCATTTCCATGAACTGTGCGTATTCGTTTGGCGCTCGGCTCGGACAACG
ACACGAAGGTGCTCCGTGCTTGCGACGTGGAGTTCGAGACCTTTGACGTG
CTCAGCGATCCGGCGGTTCGCGATAAGATAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig81395:30..512-

>mRNA_H-elongata_contig81395.15801.1 ID=mRNA_H-elongata_contig81395.15801.1|Name=mRNA_H-elongata_contig81395.15801.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig81395:30..512- (Himanthalia elongata Himel1 dioecious)
ATGGTTTGGAGGGCTTGCAGTGGGCTGATTGACCGGCTGGTGAAGGAGAA
CAAGGTGATGCTCTTTATGAAGGGCAACAAGATGTTCCCGCAGTGCGGTT
TCTCCAACAGCGCCATCCAGATGGTTTGGAGGGCTTGCAGTGGGCTGATT
GACCGGCTGGTGAAGGAGAACAAGGTGATGCTCTTTATGAAGGGCAACAA
GATGTTCCCGCAGTGCGGTTTCTCCAACAGCGCCATCCAGGTGCTCCGTG
CTTGCGACGTGGAGTTCGAGACCTTTGACGTGCTCAGCGATCCGGCGGTT
CGCGATAAGATAAAGGTGCTCCGTGCTTGCGACGTGGAGTTCGAGACCTT
TGACGTGCTCAGCGATCCGGCGGTTCGCGATAAGATAAAG
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