mRNA_H-elongata_contig8122.15781.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8122.15781.1
Unique NamemRNA_H-elongata_contig8122.15781.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8122.15781.1 vs. uniprot
Match: A0A6H5K1C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.250e-17
Identity = 71/182 (39.01%), Postives = 93/182 (51.10%), Query Frame = 2 
Query: 1094 GRWPSGGGLQKGASREKSASVNSANAG--RSNAARCLVMHPHAGTVLHCPHCDEEVAGCGFKGCSGSLVRVPSFSDDDIGGVPIRPAYKRTSIPPFP---PLFSGTGIA-GGGSGVHQNDGRSRSVFQVAAAAAS----GMLSPSQSLGSQNRK-----SSKLRRSFLWGPAPCDTFDDETD 1594
            GRW SG   ++G S+E++AS+  +  G  RS+  + LVM    GT LHCPHC +EVAGCGF+GCSGSL+R PSFSD+        P    T   P P   P   G   A  GG     N G  RS      +               +G  ++      +S+LR SF  GP+PCD FD+E+D
Sbjct:  533 GRWTSGV-RRRGKSKERAASMAGSTGGETRSSGVKSLVMFAEYGTRLHCPHCSKEVAGCGFRGCSGSLIRKPSFSDE------FGPEESFTLPAPQPMRAPALGGFSSALPGGGXXXXNCGSVRSASHRTTSGEGCXXXXXXXXXXXVGGAHKSLPMAAASRLRMSFCRGPSPCDRFDNESD 707
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BLAST of mRNA_H-elongata_contig8122.15781.1 vs. uniprot
Match: D7FH00_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH00_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.510e-15
Identity = 78/214 (36.45%), Postives = 94/214 (43.93%), Query Frame = 2 
Query: 1094 GRWPSGGGLQKGASREKSASVNSANAG--RSNAARCLVMHPHAGTVLHCPHCDEEVAGCGFKGCSGSLVRVPSFSDDDIGGVPIRPAYKRTSIPPFP---PLFSGTGIAGGG-----------------------------------SGVHQNDGRSRSVFQVAAAAASGMLSPSQSLGSQNRKS-------SKLRRSFLWGPAPCDTFDDETD 1594
            GRW SG   ++G S+E++ASV  +  G  RS+  + LVM    GT LHCPHC +EVAGCGF+GCSGSL+R PSFSD+        P    T   P P   P F G   A  G                                   S   QN G  RS         SG             KS       S+LR SF  GP+PCDTFD+E+D
Sbjct:  564 GRWTSGV-RRRGKSKERAASVAGSAGGETRSSGVKSLVMFAEYGTRLHCPHCSKEVAGCGFRGCSGSLIRKPSFSDE------FGPEESFTLPAPQPVRAPAFGGFTSALPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLSPSTQNCGSVRSASHRTT---SGXXXXXXXXXXXAHKSLPMAAAASRLRMSFCRGPSPCDTFDNESD 767
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8122.15781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1C2_9PHAE1.250e-1739.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH00_ECTSI3.510e-1536.45G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8122contigH-elongata_contig8122:187..2903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2073
Cds size1272
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8122.15781.1prot_H-elongata_contig8122.15781.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8122 570..2441 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931219.1753507-UTR-H-elongata_contig8122:186..5691622931219.1753507-UTR-H-elongata_contig8122:186..569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8122 187..569 -
1691679746.665533-UTR-H-elongata_contig8122:186..5691691679746.665533-UTR-H-elongata_contig8122:186..569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8122 187..569 -
1622931219.2332587-UTR-H-elongata_contig8122:2441..25231622931219.2332587-UTR-H-elongata_contig8122:2441..2523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8122 2442..2523 -
1691679746.6961563-UTR-H-elongata_contig8122:2441..25231691679746.6961563-UTR-H-elongata_contig8122:2441..2523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8122 2442..2523 -
1622931219.2519505-UTR-H-elongata_contig8122:2567..29031622931219.2519505-UTR-H-elongata_contig8122:2567..2903Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8122 2568..2903 -
1691679746.7124085-UTR-H-elongata_contig8122:2567..29031691679746.7124085-UTR-H-elongata_contig8122:2567..2903Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8122 2568..2903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931219.1960604-CDS-H-elongata_contig8122:569..10071622931219.1960604-CDS-H-elongata_contig8122:569..1007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8122 570..1007 -
1691679746.6745396-CDS-H-elongata_contig8122:569..10071691679746.6745396-CDS-H-elongata_contig8122:569..1007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8122 570..1007 -
1622931219.2168183-CDS-H-elongata_contig8122:1607..24411622931219.2168183-CDS-H-elongata_contig8122:1607..2441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8122 1608..2441 -
1691679746.6838918-CDS-H-elongata_contig8122:1607..24411691679746.6838918-CDS-H-elongata_contig8122:1607..2441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8122 1608..2441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8122.15781.1

>prot_H-elongata_contig8122.15781.1 ID=prot_H-elongata_contig8122.15781.1|Name=mRNA_H-elongata_contig8122.15781.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=424bp
MSPGGGWRELVIPDPLGFWTSPRPVRRIRSSGEINARAADGLALAKAAVA
AAQGKDREGVAANSMRRLSHSGCVDRITSSTASLSAERRGSGAHSISLPM
KLPPSGASGSSRASRASRASQTSSRSNRTPHSARERCGSSDYSSSLRSST
DSCNVDPTMLTVNGYGWNGNSGPSSLRQSGVWSSLNTAASCGGSGSRGGG
RGGRGGRGSGSSRHKSGPVDESRRLGRWPSGGGLQKGASREKSASVNSAN
AGRSNAARCLVMHPHAGTVLHCPHCDEEVAGCGFKGCSGSLVRVPSFSDD
DIGGVPIRPAYKRTSIPPFPPLFSGTGIAGGGSGVHQNDGRSRSVFQVAA
AAASGMLSPSQSLGSQNRKSSKLRRSFLWGPAPCDTFDDETDSSIDGRGR
GGEVGGESSTLGISPHTISSACP*
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mRNA from alignment at H-elongata_contig8122:187..2903-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8122.15781.1 ID=mRNA_H-elongata_contig8122.15781.1|Name=mRNA_H-elongata_contig8122.15781.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2717bp|location=Sequence derived from alignment at H-elongata_contig8122:187..2903- (Himanthalia elongata Himel1 dioecious)
GTTGGCGTGGGCACCCTCTGCACGATCCTCGCCCCCAAGGTTCTGCGCGC
CAAGCAAGAGCTCGAAGGGAAGTCACTAGTCGGCCCTTCCGCTGTTGTGA
CCAGCTACAGTGGTGACCCCGTCAACGCCGGCGACATCACCAACCGCAGC
GGCAACGACGGCAGCGGCACCGGTAACAACGGCAGGCAAGGGATAGACCC
CCTTTGCCCGACACGCTCGAGACAAGGCTCAGGCGACAGTGGTAGCCTCC
ACGCGAGCGCCGGAATCTTCGGGAACTCGATGCCCACAATCTCTGACGTG
TGCCCGAATGTAGAGGAAAGCCCGCCGTTAGCGGTGGTCCCTGGAACCGA
CATGAATAAAGACGACGATAAAAGCGGAAGCGCCAGACGAAGCGAACCGA
CACCCACTCTTAGCGACAAGGTCTTAGCGGCCGGCAACGGCAACGGGACA
ACCAATTGCAAGATGTCTCCCGGCGGCGGCTGGAGGGAGCTCGTCATCCC
CGACCCGTTGGGGTTCTGGACATCCCCGCGCCCCGTCCGGCGCATCCGAA
GCAGCGGGGAGATCAATGCGCGAGCCGCGGACGGATTGGCACTGGCAAAA
GCAGCAGTGGCGGCGGCACAAGGCAAGGATCGGGAAGGAGTCGCCGCTAA
CAGCATGCGGCGGCTCAGCCATAGTGGTTGCGTAGACAGGATCACTTCAT
CGACCGCGTCGTTGTCAGCCGAGAGGCGAGGCAGCGGGGCACATTCGATC
TCCCTCCCTATGAAGCTCCCGCCGAGCGGGGCGAGCGGGAGTAGCCGGGC
CAGTCGGGCCAGTCGGGCCAGCCAAACTAGCTCACGTTCGAACAGAACTC
CACATTCGGCCAGGGAGCGCTGTGGGAGCAGTGACTACTCGTCCTCACTG
CGGTCCAGCACGGATAGCTGTAACGTCGACCCTACCATGCTAACAGTGAA
TGGATACGGCTGGAATGGCAACAGCGGGCCTTCGAGCCTGAGGCAGTCAG
GAGTCTGGTCGTCACTTAACACCGCCGCTTCCTGCGGTGGCAGTGGCAGT
CGGGGAGGAGGGAGAGGAGGGAGAGGAGGACGAGGTAGTGGGTCTTCGCG
ACACAAGTCTGGTCCCGTGGACGAAAGCCGTCGACTCGGGCGATGGCCAA
GCGGCGGGGGTCTTCAGAAGGGGGCGTCGAGGGAAAAGTCGGCCTCGGTG
AACAGCGCGAACGCCGGGCGGAGCAATGCAGCCAGATGCTTGGTAATGCA
TCCTCATGCCGGGACCGTCCTGCATTGTCCGCACTGCGACGAAGAGGTGC
GTGGCGAAGGGGGATTAGTGGGTCATGGAAGGTGGGGAAATGGGGAGTGG
GGACATGGGTGGATTATTTTCGGGGTTTTACACCATCGAGAGGGTTAGTT
CTCCTGTACAGACTGTACGGTGTACTTTCTTGCTTGTTGTCGCGAAAATT
AAAAACGGGAGCGCTGTGTAGTCAGTGCCGGTGGATGTCTATGTGTGTAT
AGTATAGTAGGAAAAGGAGAAAGCGCGTTCCAACAAGTTGCGGGGGTTTG
GGCGAAAATACCGCGTTGTGCGTATGGAGGCGCGTCGGACGCGATTGGCC
CGAGAACCGCACGTTCGAGGCCACTTGGATAATGAGTTTACATTTATAGA
CTCGTCCTCTCTCTCTCCGAATCTCGCCCTATCGTAAAAGCCTCCTGTCA
GAGAGGAAAATCATTCCAGAAGAGAGAAGAAAACGAATTTGTTTTGGCCT
TTTGTGTCTCTTGCCACACGCGAGAGCTACTTACTCACCCTACGCTATCG
GTCCATCACAGACAGAGCTAATCATCATCGCCTTATCGCCGTGTACATGT
ATAAGGGACCGGCCTCCTCCGCCGCCGCCGCCGCCTCCTCCTACAGGTGG
CCGGGTGCGGATTCAAGGGATGCTCGGGATCCCTTGTCCGCGTTCCTAGC
TTTAGTGACGATGATATCGGCGGCGTCCCGATTCGCCCGGCCTACAAGAG
GACCTCCATTCCCCCCTTCCCGCCTCTTTTCTCGGGGACTGGCATTGCGG
GCGGTGGTAGTGGAGTGCACCAAAACGACGGGCGATCGCGTTCCGTGTTT
CAGGTGGCCGCCGCCGCAGCTTCGGGGATGCTCTCCCCTTCCCAGTCCCT
CGGCTCACAGAACAGAAAGTCCAGCAAGCTGCGGAGAAGCTTCCTTTGGG
GGCCCGCTCCATGCGACACGTTCGATGACGAGACTGACAGCAGCATAGAC
GGTAGGGGCCGCGGAGGAGAAGTGGGCGGGGAGAGTTCGACCCTGGGGAT
CTCCCCCCACACGATTTCCTCCGCTTGTCCTTGAGGGAGGAAATTATTGC
GTGTGTGTGTATGAGAGAGGAAATGATTGAGAGAGAGATAGAAAGATATA
GTCCCTTCCCGTGGCGTGATATGTTTTCGTCGCTTCCCGGCGGGAGCTTG
GTTTTTGGGGAGGAGGAGGAACATATACGTACACACACGCACACACACGC
ATGCACACATACAAACTATTCCCTCTTTTTGTAAAAGCAGCGAGATAGGT
TTCGGAACGGACATACTCCTCGGACGGACAGACAGACAAGAAGAGTAGTG
TTAGTAGCGGATGGAAGGCAATCGAAAGCAAGCTTTTTCCTTCTTTCTCA
CACCTTGCGTACAAAGGTACCAGTGCCGTAGGAGTTGATGGGATATTGGC
CGACATACCAGGGGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig8122:187..2903-

>mRNA_H-elongata_contig8122.15781.1 ID=mRNA_H-elongata_contig8122.15781.1|Name=mRNA_H-elongata_contig8122.15781.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2544bp|location=Sequence derived from alignment at H-elongata_contig8122:187..2903- (Himanthalia elongata Himel1 dioecious)
ATGTCTCCCGGCGGCGGCTGGAGGGAGCTCGTCATCCCCGACCCGTTGGG
GTTCTGGACATCCCCGCGCCCCGTCCGGCGCATCCGAAGCAGCGGGGAGA
TCAATGCGCGAGCCGCGGACGGATTGGCACTGGCAAAAGCAGCAGTGGCG
GCGGCACAAGGCAAGGATCGGGAAGGAGTCGCCGCTAACAGCATGCGGCG
GCTCAGCCATAGTGGTTGCGTAGACAGGATCACTTCATCGACCGCGTCGT
TGTCAGCCGAGAGGCGAGGCAGCGGGGCACATTCGATCTCCCTCCCTATG
AAGCTCCCGCCGAGCGGGGCGAGCGGGAGTAGCCGGGCCAGTCGGGCCAG
TCGGGCCAGCCAAACTAGCTCACGTTCGAACAGAACTCCACATTCGGCCA
GGGAGCGCTGTGGGAGCAGTGACTACTCGTCCTCACTGCGGTCCAGCACG
GATAGCTGTAACGTCGACCCTACCATGCTAACAGTGAATGGATACGGCTG
GAATGGCAACAGCGGGCCTTCGAGCCTGAGGCAGTCAGGAGTCTGGTCGT
CACTTAACACCGCCGCTTCCTGCGGTGGCAGTGGCAGTCGGGGAGGAGGG
AGAGGAGGGAGAGGAGGACGAGGTAGTGGGTCTTCGCGACACAAGTCTGG
TCCCGTGGACGAAAGCCGTCGACTCGGGCGATGGCCAAGCGGCGGGGGTC
TTCAGAAGGGGGCGTCGAGGGAAAAGTCGGCCTCGGTGAACAGCGCGAAC
GCCGGGCGGAGCAATGCAGCCAGATGCTTGGTAATGCATCCTCATGCCGG
GACCGTCCTGCATTGTCCGCACTGCGACGAAGAGATGTCTCCCGGCGGCG
GCTGGAGGGAGCTCGTCATCCCCGACCCGTTGGGGTTCTGGACATCCCCG
CGCCCCGTCCGGCGCATCCGAAGCAGCGGGGAGATCAATGCGCGAGCCGC
GGACGGATTGGCACTGGCAAAAGCAGCAGTGGCGGCGGCACAAGGCAAGG
ATCGGGAAGGAGTCGCCGCTAACAGCATGCGGCGGCTCAGCCATAGTGGT
TGCGTAGACAGGATCACTTCATCGACCGCGTCGTTGTCAGCCGAGAGGCG
AGGCAGCGGGGCACATTCGATCTCCCTCCCTATGAAGCTCCCGCCGAGCG
GGGCGAGCGGGAGTAGCCGGGCCAGTCGGGCCAGTCGGGCCAGCCAAACT
AGCTCACGTTCGAACAGAACTCCACATTCGGCCAGGGAGCGCTGTGGGAG
CAGTGACTACTCGTCCTCACTGCGGTCCAGCACGGATAGCTGTAACGTCG
ACCCTACCATGCTAACAGTGAATGGATACGGCTGGAATGGCAACAGCGGG
CCTTCGAGCCTGAGGCAGTCAGGAGTCTGGTCGTCACTTAACACCGCCGC
TTCCTGCGGTGGCAGTGGCAGTCGGGGAGGAGGGAGAGGAGGGAGAGGAG
GACGAGGTAGTGGGTCTTCGCGACACAAGTCTGGTCCCGTGGACGAAAGC
CGTCGACTCGGGCGATGGCCAAGCGGCGGGGGTCTTCAGAAGGGGGCGTC
GAGGGAAAAGTCGGCCTCGGTGAACAGCGCGAACGCCGGGCGGAGCAATG
CAGCCAGATGCTTGGTAATGCATCCTCATGCCGGGACCGTCCTGCATTGT
CCGCACTGCGACGAAGAGGTGGCCGGGTGCGGATTCAAGGGATGCTCGGG
ATCCCTTGTCCGCGTTCCTAGCTTTAGTGACGATGATATCGGCGGCGTCC
CGATTCGCCCGGCCTACAAGAGGACCTCCATTCCCCCCTTCCCGCCTCTT
TTCTCGGGGACTGGCATTGCGGGCGGTGGTAGTGGAGTGCACCAAAACGA
CGGGCGATCGCGTTCCGTGTTTCAGGTGGCCGCCGCCGCAGCTTCGGGGA
TGCTCTCCCCTTCCCAGTCCCTCGGCTCACAGAACAGAAAGTCCAGCAAG
CTGCGGAGAAGCTTCCTTTGGGGGCCCGCTCCATGCGACACGTTCGATGA
CGAGACTGACAGCAGCATAGACGGTAGGGGCCGCGGAGGAGAAGTGGGCG
GGGAGAGTTCGACCCTGGGGATCTCCCCCCACACGATTTCCTCCGCTTGT
CCTTGAGTGGCCGGGTGCGGATTCAAGGGATGCTCGGGATCCCTTGTCCG
CGTTCCTAGCTTTAGTGACGATGATATCGGCGGCGTCCCGATTCGCCCGG
CCTACAAGAGGACCTCCATTCCCCCCTTCCCGCCTCTTTTCTCGGGGACT
GGCATTGCGGGCGGTGGTAGTGGAGTGCACCAAAACGACGGGCGATCGCG
TTCCGTGTTTCAGGTGGCCGCCGCCGCAGCTTCGGGGATGCTCTCCCCTT
CCCAGTCCCTCGGCTCACAGAACAGAAAGTCCAGCAAGCTGCGGAGAAGC
TTCCTTTGGGGGCCCGCTCCATGCGACACGTTCGATGACGAGACTGACAG
CAGCATAGACGGTAGGGGCCGCGGAGGAGAAGTGGGCGGGGAGAGTTCGA
CCCTGGGGATCTCCCCCCACACGATTTCCTCCGCTTGTCCTTGA
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