prot_H-elongata_contig8122.15781.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8122.15781.1
Unique Nameprot_H-elongata_contig8122.15781.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length424
Homology
BLAST of mRNA_H-elongata_contig8122.15781.1 vs. uniprot
Match: A0A6H5K1C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.070e-18
Identity = 71/182 (39.01%), Postives = 93/182 (51.10%), Query Frame = 0
Query:  226 GRWPSGGGLQKGASREKSASVNSANAG--RSNAARCLVMHPHAGTVLHCPHCDEEVAGCGFKGCSGSLVRVPSFSDDDIGGVPIRPAYKRTSIPPFP---PLFSGTGIA-GGGSGVHQNDGRSRSVFQVAAAAAS----GMLSPSQSLGSQNRK-----SSKLRRSFLWGPAPCDTFDDETD 392
            GRW SG   ++G S+E++AS+  +  G  RS+  + LVM    GT LHCPHC +EVAGCGF+GCSGSL+R PSFSD+        P    T   P P   P   G   A  GG     N G  RS      +               +G  ++      +S+LR SF  GP+PCD FD+E+D
Sbjct:  533 GRWTSGV-RRRGKSKERAASMAGSTGGETRSSGVKSLVMFAEYGTRLHCPHCSKEVAGCGFRGCSGSLIRKPSFSDE------FGPEESFTLPAPQPMRAPALGGFSSALPGGGXXXXNCGSVRSASHRTTSGEGCXXXXXXXXXXXVGGAHKSLPMAAASRLRMSFCRGPSPCDRFDNESD 707          
BLAST of mRNA_H-elongata_contig8122.15781.1 vs. uniprot
Match: D7FH00_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH00_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 7.200e-16
Identity = 78/214 (36.45%), Postives = 94/214 (43.93%), Query Frame = 0
Query:  226 GRWPSGGGLQKGASREKSASVNSANAG--RSNAARCLVMHPHAGTVLHCPHCDEEVAGCGFKGCSGSLVRVPSFSDDDIGGVPIRPAYKRTSIPPFP---PLFSGTGIAGGG-----------------------------------SGVHQNDGRSRSVFQVAAAAASGMLSPSQSLGSQNRKS-------SKLRRSFLWGPAPCDTFDDETD 392
            GRW SG   ++G S+E++ASV  +  G  RS+  + LVM    GT LHCPHC +EVAGCGF+GCSGSL+R PSFSD+        P    T   P P   P F G   A  G                                   S   QN G  RS         SG             KS       S+LR SF  GP+PCDTFD+E+D
Sbjct:  564 GRWTSGV-RRRGKSKERAASVAGSAGGETRSSGVKSLVMFAEYGTRLHCPHCSKEVAGCGFRGCSGSLIRKPSFSDE------FGPEESFTLPAPQPVRAPAFGGFTSALPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLSPSTQNCGSVRSASHRTT---SGXXXXXXXXXXXAHKSLPMAAAASRLRMSFCRGPSPCDTFDNESD 767          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8122.15781.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1C2_9PHAE2.070e-1839.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH00_ECTSI7.200e-1636.45G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8122contigH-elongata_contig8122:570..2441 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8122.15781.1mRNA_H-elongata_contig8122.15781.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8122 187..2903 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8122.15781.1 ID=prot_H-elongata_contig8122.15781.1|Name=mRNA_H-elongata_contig8122.15781.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=424bp
MSPGGGWRELVIPDPLGFWTSPRPVRRIRSSGEINARAADGLALAKAAVA
AAQGKDREGVAANSMRRLSHSGCVDRITSSTASLSAERRGSGAHSISLPM
KLPPSGASGSSRASRASRASQTSSRSNRTPHSARERCGSSDYSSSLRSST
DSCNVDPTMLTVNGYGWNGNSGPSSLRQSGVWSSLNTAASCGGSGSRGGG
RGGRGGRGSGSSRHKSGPVDESRRLGRWPSGGGLQKGASREKSASVNSAN
AGRSNAARCLVMHPHAGTVLHCPHCDEEVAGCGFKGCSGSLVRVPSFSDD
DIGGVPIRPAYKRTSIPPFPPLFSGTGIAGGGSGVHQNDGRSRSVFQVAA
AAASGMLSPSQSLGSQNRKSSKLRRSFLWGPAPCDTFDDETDSSIDGRGR
GGEVGGESSTLGISPHTISSACP*
back to top