prot_H-elongata_contig81195.15776.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig81195.15776.1
Unique Nameprot_H-elongata_contig81195.15776.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length192
Homology
BLAST of mRNA_H-elongata_contig81195.15776.1 vs. uniprot
Match: D8LEE8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE8_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 2.270e-70
Identity = 114/157 (72.61%), Postives = 134/157 (85.35%), Query Frame = 0
Query:   37 GGAAKIHVEGMSVTPLKDFVNAGMPPEVMRYVTLRKWKEPTPIQAYCWPVLNAGRDVVGVAETGSGKTLAFSLPAMARIVKRAKVMMPRENEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACVYGGVPKREQRKALGG-EGRSCVQVVVATPG 192
            G  +K+H+EGM VTPLKDF ++GMP EVM+YVTLR W +PT IQA+CWPVLNAGRDV+G+AETGSGKTL FSLPAM++I K  K    +++EGP+MLVLAPTRELALQSAEVIAEAG HCG++S CVYGGVPKR+Q+ ALGG  G  CVQVVVATPG
Sbjct:  144 GAGSKVHIEGMKVTPLKDFASSGMPAEVMKYVTLRGWDKPTLIQAHCWPVLNAGRDVIGIAETGSGKTLGFSLPAMSKIFKNMKA--GKKSEGPYMLVLAPTRELALQSAEVIAEAGGHCGIKSVCVYGGVPKRDQKIALGGGRGGGCVQVVVATPG 298          
BLAST of mRNA_H-elongata_contig81195.15776.1 vs. uniprot
Match: A0A835YU16_9STRA (DEAD box RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU16_9STRA)

HSP 1 Score: 174 bits (441), Expect = 9.270e-48
Identity = 94/154 (61.04%), Postives = 111/154 (72.08%), Query Frame = 0
Query:   39 AAKIHVEGMSVTPLKDFVNAGMPPEVMRYVTLRKWKEPTPIQAYCWPVLNAGRDVVGVAETGSGKTLAFSLPAMARIVKRAKVMMPRENEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACVYGGVPKREQRKALGGEGRSCVQVVVATPG 192
            AA I VEGM VTPL DF  AG P +++ YV  +K++ PTPIQ+YCWPVL AGRD+VG+AETGSGKTLAF LP + R++ +           P MLVLAPTRELA+QSAEVIA AG   GV  ACVYGGVPK EQ++AL    RS  + VVATPG
Sbjct:  187 AAPITVEGMDVTPLADFDGAGFPAKLLAYVLAQKFERPTPIQSYCWPVLGAGRDIVGIAETGSGKTLAFGLPGLTRVLAQKGGSGGXXGARPEMLVLAPTRELAIQSAEVIAAAGAAAGVACACVYGGVPKGEQKRAL----RSA-RAVVATPG 335          
BLAST of mRNA_H-elongata_contig81195.15776.1 vs. uniprot
Match: A0A2P4XH48_9STRA (DEAD/DEAH box RNA helicase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XH48_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.310e-40
Identity = 72/124 (58.06%), Postives = 96/124 (77.42%), Query Frame = 0
Query:   69 TLRKWKEPTPIQAYCWPVLNAGRDVVGVAETGSGKTLAFSLPAMARIVKRAKVMMPRENEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACVYGGVPKREQRKALGGEGRSCVQVVVATPG 192
            T + + +PTPIQ+ CWP+L +GRD++G+AETGSGKTLAFS+P +  I  + +V    ++ GP MLV+APTRELA+QS+ VI+EAGK CG++S C+YGGVPK+ Q+KAL    R  V VVVATPG
Sbjct:  149 TTKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPEVS--HKHPGPRMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKQTQKKAL----RDGVHVVVATPG 266          
BLAST of mRNA_H-elongata_contig81195.15776.1 vs. uniprot
Match: H3G5S8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5S8_PHYRM)

HSP 1 Score: 147 bits (371), Expect = 4.510e-39
Identity = 72/118 (61.02%), Postives = 93/118 (78.81%), Query Frame = 0
Query:   75 EPTPIQAYCWPVLNAGRDVVGVAETGSGKTLAFSLPAMARIVKRAKVMMPRENEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACVYGGVPKREQRKALGGEGRSCVQVVVATPG 192
            +PTPIQ+ CWP+L +GRD++G+AETGSGKTLAFS+P M  I  + +V +  ++ GP MLV+APTRELA+QS+ VI+EAGK CG++S C+YGGVPK  Q+KAL    R  V VVVATPG
Sbjct:   25 KPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGMIHIAAQPEVSL--KHPGPRMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKHTQKKAL----RDGVHVVVATPG 136          
BLAST of mRNA_H-elongata_contig81195.15776.1 vs. uniprot
Match: A0A484DY05_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DY05_BRELC)

HSP 1 Score: 149 bits (376), Expect = 6.190e-39
Identity = 75/142 (52.82%), Postives = 103/142 (72.54%), Query Frame = 0
Query:   51 PLKDFVNAGMPPEVMRYVTLRKWKEPTPIQAYCWPVLNAGRDVVGVAETGSGKTLAFSLPAMARIVKRAKVMMPRENEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACVYGGVPKREQRKALGGEGRSCVQVVVATPG 192
            P+  F +    P+ M+  T + + +PTPIQ+ CWP+L +GRD++G+AETGSGKTLAF++P +  I  ++ V    ++ GP MLV+APTRELA+QS+ VI+EAGK CG++S C+YGGVPK  Q+KAL    R  V VVVATPG
Sbjct:  137 PVLSFKDISFEPKFMK--TTKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFAIPGLIHIAAQSGVS--PKHPGPLMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKHTQKKAL----RDGVHVVVATPG 270          
BLAST of mRNA_H-elongata_contig81195.15776.1 vs. uniprot
Match: A0A5D6YE84_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YE84_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.050e-38
Identity = 75/142 (52.82%), Postives = 102/142 (71.83%), Query Frame = 0
Query:   51 PLKDFVNAGMPPEVMRYVTLRKWKEPTPIQAYCWPVLNAGRDVVGVAETGSGKTLAFSLPAMARIVKRAKVMMPRENEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACVYGGVPKREQRKALGGEGRSCVQVVVATPG 192
            P++ F +     + ++  T   + +PTPIQ+ CWP+L +GRD++G+AETGSGKTLAFS+P +  I   A+  +  +  GP MLV+APTRELA+QS+EVI +AGK CG+RS C+YGGVPK EQ+K L    R+ V VVVATPG
Sbjct:  156 PIRSFADVTFDAKFLK--TTAGFSKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIA--AQPALSPKFSGPRMLVVAPTRELAMQSSEVITQAGKQCGLRSTCIYGGVPKHEQKKIL----RNGVHVVVATPG 289          
BLAST of mRNA_H-elongata_contig81195.15776.1 vs. uniprot
Match: UPI000C784A6A (DEAD-box ATP-dependent RNA helicase 5-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C784A6A)

HSP 1 Score: 147 bits (370), Expect = 3.390e-38
Identity = 76/142 (53.52%), Postives = 98/142 (69.01%), Query Frame = 0
Query:   51 PLKDFVNAGMPPEVMRYVTLRKWKEPTPIQAYCWPVLNAGRDVVGVAETGSGKTLAFSLPAMARIVKRAKVMMPRENEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACVYGGVPKREQRKALGGEGRSCVQVVVATPG 192
            P+  F   G    +M+  +  K+  PTPIQA CWPVL +GRD++G+AETGSGKTLAF++PA+A I +R     P + +GP ML++APTRELA+QS EV+ EA     +RS CVYGGVPK  QR  L    +S V+VVVATPG
Sbjct:  112 PILTFPELGFSKSIMKICS--KFDRPTPIQAQCWPVLGSGRDIIGIAETGSGKTLAFTIPALAHIKERMSTE-PGKKKGPMMLIIAPTRELAMQSQEVLEEASNIVKIRSICVYGGVPKHSQRHGL----KSGVEVVVATPG 246          
BLAST of mRNA_H-elongata_contig81195.15776.1 vs. uniprot
Match: A0A0P1AQT8_PLAHL (Dead box rna helicase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQT8_PLAHL)

HSP 1 Score: 147 bits (371), Expect = 3.530e-38
Identity = 70/124 (56.45%), Postives = 97/124 (78.23%), Query Frame = 0
Query:   69 TLRKWKEPTPIQAYCWPVLNAGRDVVGVAETGSGKTLAFSLPAMARIVKRAKVMMPRENEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACVYGGVPKREQRKALGGEGRSCVQVVVATPG 192
            T + + +PTPIQ+ CWP+L +GRD++G+AETGSGKTLAF++P +  I  + +V    ++ GP MLV+APTRELA+QS+ VI+EAGK+CG++S C+YGGVPK+ Q+KAL    R  + VVVATPG
Sbjct:  162 TTKDFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFAIPGLIHIAAQPEVS--HKHPGPRMLVVAPTRELAMQSSAVISEAGKNCGLKSICIYGGVPKQAQKKAL----RDGIHVVVATPG 279          
BLAST of mRNA_H-elongata_contig81195.15776.1 vs. uniprot
Match: D0MT79_PHYIT (DEAD/DEAH box RNA helicase, putative n=19 Tax=Phytophthora TaxID=4783 RepID=D0MT79_PHYIT)

HSP 1 Score: 147 bits (371), Expect = 3.600e-38
Identity = 72/124 (58.06%), Postives = 95/124 (76.61%), Query Frame = 0
Query:   69 TLRKWKEPTPIQAYCWPVLNAGRDVVGVAETGSGKTLAFSLPAMARIVKRAKVMMPRENEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACVYGGVPKREQRKALGGEGRSCVQVVVATPG 192
            T + + +PTPIQ+ CWP+L +GRD++G+AETGSGKTLAFS+P +  I  + +V    ++ GP MLV+APTRELA+QS+ VI+EAGK CG++S C+YGGVPK  Q+KAL    R  V VVVATPG
Sbjct:  164 TTKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPEVS--HKHPGPRMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKHTQKKAL----RDGVHVVVATPG 281          
BLAST of mRNA_H-elongata_contig81195.15776.1 vs. uniprot
Match: A0A7S3XUU1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU1_HETAK)

HSP 1 Score: 146 bits (369), Expect = 7.610e-38
Identity = 81/144 (56.25%), Postives = 97/144 (67.36%), Query Frame = 0
Query:   51 PLKDFVNAGMPPEVMRYVTLRKWKEPTPIQAYCWPVLNAGRDVVGVAETGSGKTLAFSLPAMARIVKR--AKVMMPRENEGPFMLVLAPTRELALQSAEVIAEAGKHCGVRSACVYGGVPKREQRKALGGEGRSCVQVVVATPG 192
            P + F  AG PPEV+       +  PTPIQA CWP+L+AGRD++GVAETGSGKTLAFSLPA+ARI +       + R+  GP MLV+ PTRELA Q A VI  AG   G+RS CVYGGVPK EQ++ L    +    VVVATPG
Sbjct:  144 PHQTFGEAGFPPEVLG--GCEGFTAPTPIQAQCWPILSAGRDLIGVAETGSGKTLAFSLPALARIHRELGGGKALSRQRPGPLMLVICPTRELAQQCAAVIETAGAGAGLRSVCVYGGVPKHEQKRKLQ-NAQGGAHVVVATPG 284          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81195.15776.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEE8_ECTSI2.270e-7072.61DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835YU16_9STRA9.270e-4861.04DEAD box RNA helicase n=1 Tax=Tribonema minus TaxI... [more]
A0A2P4XH48_9STRA3.310e-4058.06DEAD/DEAH box RNA helicase (Fragment) n=1 Tax=Phyt... [more]
H3G5S8_PHYRM4.510e-3961.02Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A484DY05_BRELC6.190e-3952.82Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A5D6YE84_9STRA1.050e-3852.82Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
UPI000C784A6A3.390e-3853.52DEAD-box ATP-dependent RNA helicase 5-like n=1 Tax... [more]
A0A0P1AQT8_PLAHL3.530e-3856.45Dead box rna helicase n=1 Tax=Plasmopara halstedii... [more]
D0MT79_PHYIT3.600e-3858.06DEAD/DEAH box RNA helicase, putative n=19 Tax=Phyt... [more]
A0A7S3XUU1_HETAK7.610e-3856.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 77..192
e-value: 6.9E-27
score: 94.3
NoneNo IPR availableGENE3D3.40.50.300coord: 2..192
e-value: 8.0E-45
score: 154.9
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 39..192
NoneNo IPR availablePANTHERPTHR24031:SF572DEAD-BOX ATP-DEPENDENT RNA HELICASE 40coord: 39..192
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 53..81
score: 9.394
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 84..192
score: 15.596
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 43..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81195contigH-elongata_contig81195:2..1510 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81195.15776.1mRNA_H-elongata_contig81195.15776.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig81195 2..1510 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig81195.15776.1 ID=prot_H-elongata_contig81195.15776.1|Name=mRNA_H-elongata_contig81195.15776.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
GKSKKKKKKKKEGGKASASETPVDVAGSKAEAEAVSGGAAKIHVEGMSVT
PLKDFVNAGMPPEVMRYVTLRKWKEPTPIQAYCWPVLNAGRDVVGVAETG
SGKTLAFSLPAMARIVKRAKVMMPRENEGPFMLVLAPTRELALQSAEVIA
EAGKHCGVRSACVYGGVPKREQRKALGGEGRSCVQVVVATPG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase