mRNA_H-elongata_contig81112.15767.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig81112.15767.1
Unique Name	mRNA_H-elongata_contig81112.15767.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: D7FP83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP83_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.210e-49
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 1

Query:   10 SAKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQA 288
            + KLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQ AETMISEEIESVQ EADE+E GWSQSIWPLAMQLRT+LVQRREQA
Sbjct:  106 AGKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQLRTVLVQRREQA 198

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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A835Z738_9STRA (Pre protein translocase subunit Sec66-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z738_9STRA)

HSP 1 Score: 124 bits (310), Expect = 4.950e-32
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 1

Query:   19 LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQA 288
            LRN LLKRAIADIPII+R+Q EGPG+ N+YQQAMIG++EW A+Q AE +I EEIE VQ EA+E+E GW Q IW +A +LR  L+QR++QA
Sbjct:  116 LRNPLLKRAIADIPIIMRLQKEGPGMQNLYQQAMIGDREWQAYQAAEALIGEEIEQVQAEAEEIEPGWGQQIWRMASELRQALLQRQQQA 205

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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A7S3L5D8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5D8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.500e-21
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 1

Query:   28 ALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQ 285
            AL+KRAIADIPI+  +Q E PG+  +Y Q+M  EK+W A+Q AE ++S E++ V+ E+D++E GWSQ IW  AMQ   +L QR EQ
Sbjct:  145 ALMKRAIADIPILQHIQKESPGMNKLYSQSMCSEKQWRAYQKAEALVSAEVDEVRRESDQIEPGWSQMIWRQAMQYHQMLKQRHEQ 230

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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A1Z5KHC6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHC6_FISSO)

HSP 1 Score: 96.3 bits (238), Expect = 5.050e-21
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 1

Query:   19 LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQAEAAAEKEAEAAIGKK 333
            L  AL+KRAIADIP++  +Q E  G+  +Y Q+M   K+W ++Q AE+++S+E+E V+ EADE+E GWSQSIW  AMQ   +L QR E      EK+ E AI K+
Sbjct:  133 LAQALMKRAIADIPMVQHIQKESSGMNKLYSQSMCSVKQWRSYQQAESLVSQEVEEVRAEADEIEPGWSQSIWRQAMQYHQMLKQRHE----LEEKQREEAIQKR 233

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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A6U3U3N1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3U3N1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.640e-21
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 1

Query:   19 LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRRE 282
            L  AL+KR IADIPI+  +Q E PG+  +Y Q+M   K+W ++Q AE M+S E++ V+ EADE+E GWSQ IW  AMQ   +L QR E
Sbjct:  133 LAQALMKRCIADIPIVTHIQKESPGMNKLYSQSMCSVKQWRSYQAAEAMVSAEVDEVRAEADEIEPGWSQVIWRQAMQYHNMLKQRHE 220

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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: B8C1S0_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1S0_THAPS)

HSP 1 Score: 95.9 bits (237), Expect = 8.520e-21
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 1

Query:   19 LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQAEAAA 300
            L  AL+KR IADIPI+  +Q E  G+  +Y Q+M   K+W ++Q AE M+S E+E V+ EADEVE GWSQ IW  AMQ   +L Q+ EQA+ AA
Sbjct:  139 LAQALMKRCIADIPIVTFIQRESAGMNKLYSQSMCSVKQWKSYQAAEAMVSAEVEEVRAEADEVEPGWSQVIWRQAMQYHNMLKQKEEQAKQAA 232

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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A7S1E5I0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E5I0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 9.970e-21
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 1

Query:   28 ALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQAEAAAEKEAEAAIGKK 333
            AL+KR IADIPI+  +Q E PG+  +Y Q+M   K+W  +Q AE ++S E++ V+ EADE+E GWSQ IW  AMQ   +L Q+ EQ    A++ A AA+ KK
Sbjct:   96 ALMKRCIADIPIVTHIQKESPGMNKLYSQSMCSVKQWRTYQAAEALVSGEVDEVRAEADEIEPGWSQVIWKQAMQYHNMLKQKHEQE---AQQVAAAAVKKK 194

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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: K0T2G4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T2G4_THAOC)

HSP 1 Score: 95.5 bits (236), Expect = 1.610e-20
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1

Query:   19 LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQAEAAA 300
            L  AL+KR IADIPI+  +Q E  G+  +Y Q+M   K+W ++Q AE M+S E+E V+ EADE+E GWSQ++W  AMQ   ++ Q+ EQA++ A
Sbjct:  129 LAQALMKRCIADIPIVTHIQKESQGMNKLYSQSMCSVKQWKSYQAAEAMVSAEVEEVRAEADEIEPGWSQAVWRQAMQYHNMIKQKEEQAKSQA 222

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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A7S4HV37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HV37_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.000e-20
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1

Query:   19 LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLL 267
            L  AL+KRAI DIPI+  +Q E  G+  +Y Q+M   K+W ++Q AE M+S E+E V+ EAD++EAGWSQ IW  AMQ   +L
Sbjct:   16 LAQALMKRAIGDIPIVTHIQKESSGMNKLYSQSMCSVKQWRSYQAAEAMVSGEVEEVRGEADQIEAGWSQVIWRQAMQYHNML 98

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BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Match: A0A448YU82_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU82_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.160e-20
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 1

Query:   28 ALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQTAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQAEAAAEKEAEAAIGKK 333
            AL+KRAI DIPI+  +Q E  G+  +Y Q+M    +W A+Q AETM+S E++ V+ EADE+E GWSQ IW  AMQ   +L Q+ EQ + AA   AE A  KK
Sbjct:  124 ALMKRAIGDIPIVTFIQKESAGMNKLYSQSMCSVSQWRAYQNAETMVSTEVDEVRAEADEIEPGWSQVIWRQAMQYHGMLKQKHEQEQRAA---AETAAKKK 222

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot

BLAST of mRNA_H-elongata_contig81112.15767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FP83_ECTSI	1.210e-49	92.47	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835Z738_9STRA	4.950e-32	65.56	Pre protein translocase subunit Sec66-domain-conta...	[more]
A0A7S3L5D8_9STRA	2.500e-21	52.33	Hypothetical protein (Fragment) n=1 Tax=Amphora co...	[more]
A0A1Z5KHC6_FISSO	5.050e-21	48.57	Uncharacterized protein n=2 Tax=Fistulifera solari...	[more]
A0A6U3U3N1_9STRA	7.640e-21	51.14	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
B8C1S0_THAPS	8.520e-21	52.13	Uncharacterized protein n=1 Tax=Thalassiosira pseu...	[more]
A0A7S1E5I0_9STRA	9.970e-21	48.04	Hypothetical protein n=1 Tax=Thalassionema nitzsch...	[more]
K0T2G4_THAOC	1.610e-20	47.87	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]
A0A7S4HV37_9STRA	3.000e-20	50.60	Hypothetical protein (Fragment) n=1 Tax=Odontella ...	[more]
A0A448YU82_9STRA	6.160e-20	50.00	Uncharacterized protein n=1 Tax=Pseudo-nitzschia m...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig81112	contig	H-elongata_contig81112:72..1629 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	171.0
Seed ortholog evalue	4.5e-40
Seed eggNOG ortholog	2880.D7FP83
EggNOG free text desc.	Preprotein translocase subunit Sec66
EggNOG OGs	2BH0U@1,2S501@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	3
Model size	489
Cds size	489
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig81112.15767.1	prot_H-elongata_contig81112.15767.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig81112 72..1629 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931217.9331543-CDS-H-elongata_contig81112:71..223	1622931217.9331543-CDS-H-elongata_contig81112:71..223	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig81112 72..223 +
1691679746.211592-CDS-H-elongata_contig81112:71..223	1691679746.211592-CDS-H-elongata_contig81112:71..223	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig81112 72..223 +
1622931217.9465675-CDS-H-elongata_contig81112:511..616	1622931217.9465675-CDS-H-elongata_contig81112:511..616	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig81112 512..616 +
1691679746.2226615-CDS-H-elongata_contig81112:511..616	1691679746.2226615-CDS-H-elongata_contig81112:511..616	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig81112 512..616 +
1622931217.962856-CDS-H-elongata_contig81112:1397..1629	1622931217.962856-CDS-H-elongata_contig81112:1397..1629	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig81112 1398..1629 +
1691679746.2321997-CDS-H-elongata_contig81112:1397..1629	1691679746.2321997-CDS-H-elongata_contig81112:1397..1629	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig81112 1398..1629 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig81112:72..1629+
coding sequence from alignment at H-elongata_contig81112:72..1629+

protein sequence of mRNA_H-elongata_contig81112.15767.1

>prot_H-elongata_contig81112.15767.1 ID=prot_H-elongata_contig81112.15767.1|Name=mRNA_H-elongata_contig81112.15767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MACSAKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQ
TAETMISEEIESVQTEADEVEAGWSQSIWPLAMQLRTLLVQRREQAEAAA
EKEAEAAIGKKTGKGKKAPAEKSAVSASPSGKKAVTVAAAPTATAAAKDK
DDAGNVSVGDID*

mRNA from alignment at H-elongata_contig81112:72..1629+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig81112.15767.1 ID=mRNA_H-elongata_contig81112.15767.1|Name=mRNA_H-elongata_contig81112.15767.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1558bp|location=Sequence derived from alignment at H-elongata_contig81112:72..1629+ (Himanthalia elongata Himel1 dioecious)
ATGGCATGCAGTGCTAAGCTACGCAACGCGCTGCTCAAGCGTGCGATAGC
AGACATCCCCATAATTCTGCGCATGCAGAATGAAGGTCCCGGTATCTACA
ACATGTACCAGCAGGCCATGATCGGGGAGAAGGAGTGGCACGCCTTCCAG
ACGTGAGGAAATCATTATGTTCCTCTCCTGAGTCTATGGGCGTATAGTCT
AGCCTTTTCTTTTTGGTGTGATTCGAGTTTTTGCTTGAGTCATGTGTGTT
TGTTCGATGCTTGAATATATTCTTCACTCACCCCCCCCTCTCTCAGCAAC
CTTCTTCATTCGGTGCCACCTTAACCCCTATGGAACTCGATCTGTTTTTT
TAAACCCTAAATTCAACATAAAGCTTGAAATCCAGTTCCAAAAGGGTTAA
TATTAGCTATACCCCCTTCTTGTTGGTGTGTGCGCGACAGGGCGGAGACT
ATGATATCGGAGGAAATAGAGTCCGTGCAGACCGAGGCGGACGAGGTTGA
GGCCGGATGGAGCCAGTCTATTTGGCCGTTAGCGATGCAGCTCAGGTGAA
CTTTTGGAAACCCTCTGGCTTTGTTGGTCACACAATAGAACCGGGAGTGG
GGGTGAGGACTGATACTCACGGGAACCGACATGCGCTTTCTTTGGTTCTG
TGTGTATATTCAGTGTTTGCCTCGGGAAAGCGCCAGGAGGGCATTCCCTG
CGCTGTTGTACAGTCCGTGGTTTCTTCTTATGCCCCCCGCCCCTCTTTCC
ACCAGGCTTGAGAGATGGCGATGGCAGACGTGTGGCCTTTCGCCATACGG
CCTCTAATGCGTTTGACGTCGCGTTCTTGCCGTATCGGCGAATGTCCTCC
CTCTCATACGAACTAGATAAGCCTTGCCTTGCCTTCCCTAGTCTAGTCCA
TCGAGCCAGAGAATCAGCGTTGACTCACTAGCTGGCGGAGTAACCGGTTC
CTTTTCGCGCGTAACCTTCCTAAATACTCTTGGGTCTGAGCAGAGCCCGG
GTGGTGACCCAGCGCACATGCGGTAACCCTTCACTCTCCTGTGTATTTAT
TAAATTGCACATAACCGCGCAATCCGGCCCTCTCTGTCATGCTAGCTAGC
TAGCTCTTCTAGGCTACTCTCGCATTGATCCTCCCTGTGTGTGTACCAAC
GTAACAGGACAAAGCGCATGTTTGCTCACTCGACCCAATCCTTCCCTTTT
TTTAGTCTCCGTGTCATGTTTTTTTCTTCCTAATCTTTTTATGATACAGT
ATGTGTACTGCTTGGGTGTGTCGATCGGTTTTCCACGTTATGACTCCGTT
GTTGTTTTCCGGGTGTGAACATGCAGAACATTGCTCGTGCAGCGACGGGA
GCAGGCGGAAGCGGCGGCAGAAAAAGAGGCCGAGGCAGCAATCGGGAAAA
AGACAGGAAAAGGAAAAAAAGCTCCAGCGGAGAAGTCAGCTGTTTCCGCG
TCACCCTCGGGAAAGAAGGCTGTAACCGTAGCAGCGGCACCAACAGCAAC
AGCGGCGGCAAAGGACAAGGACGATGCGGGAAATGTTTCTGTCGGGGATA
TTGATTGA

Coding sequence (CDS) from alignment at H-elongata_contig81112:72..1629+

>mRNA_H-elongata_contig81112.15767.1 ID=mRNA_H-elongata_contig81112.15767.1|Name=mRNA_H-elongata_contig81112.15767.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig81112:72..1629+ (Himanthalia elongata Himel1 dioecious)
ATGGCATGCAGTGCTAAGCTACGCAACGCGCTGCTCAAGCGTGCGATAGC
AGACATCCCCATAATTCTGCGCATGCAGAATGAAGGTCCCGGTATCTACA
ACATGTACCAGCAGGCCATGATCGGGGAGAAGGAGTGGCACGCCTTCCAG
ACATGGCATGCAGTGCTAAGCTACGCAACGCGCTGCTCAAGCGTGCGATA
GCAGACATCCCCATAATTCTGCGCATGCAGAATGAAGGTCCCGGTATCTA
CAACATGTACCAGCAGGCCATGATCGGGGAGAAGGAGTGGCACGCCTTCC
AGACGGCGGAGACTATGATATCGGAGGAAATAGAGTCCGTGCAGACCGAG
GCGGACGAGGTTGAGGCCGGATGGAGCCAGTCTATTTGGCCGTTAGCGAT
GCAGCTCAGGGCGGAGACTATGATATCGGAGGAAATAGAGTCCGTGCAGA
CCGAGGCGGACGAGGTTGAGGCCGGATGGAGCCAGTCTATTTGGCCGTTA
GCGATGCAGCTCAGAACATTGCTCGTGCAGCGACGGGAGCAGGCGGAAGC
GGCGGCAGAAAAAGAGGCCGAGGCAGCAATCGGGAAAAAGACAGGAAAAG
GAAAAAAAGCTCCAGCGGAGAAGTCAGCTGTTTCCGCGTCACCCTCGGGA
AAGAAGGCTGTAACCGTAGCAGCGGCACCAACAGCAACAGCGGCGGCAAA
GGACAAGGACGATGCGGGAAATGTTTCTGTCGGGGATATTGATTGAAACA
TTGCTCGTGCAGCGACGGGAGCAGGCGGAAGCGGCGGCAGAAAAAGAGGC
CGAGGCAGCAATCGGGAAAAAGACAGGAAAAGGAAAAAAAGCTCCAGCGG
AGAAGTCAGCTGTTTCCGCGTCACCCTCGGGAAAGAAGGCTGTAACCGTA
GCAGCGGCACCAACAGCAACAGCGGCGGCAAAGGACAAGGACGATGCGGG
AAATGTTTCTGTCGGGGATATTGATTGA