mRNA_H-elongata_contig8098.15757.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: D8LMR3_ECTSI (Oxidoreductase, short chain dehydrogenase/reductase family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR3_ECTSI) HSP 1 Score: 343 bits (881), Expect = 1.360e-112 Identity = 172/255 (67.45%), Postives = 205/255 (80.39%), Query Frame = 2
Query: 2 RHTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAPRGVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRYA 766
+HTASRLAE GATVLVHGRRE++VR+AVE V G KVEG VAD+S+LRG N LCDEVL T+RLDCL+NNAG++E + RHSDDG+E+TFAVNVLAPYVITGRLLDL+AKAP GGRVVNVAS A+ S DFDNLQFEKGGY+ HA+Y+LSKLLDIM+ AELARRAP+G+TCN+L PG VNTKMLR GWG+GG V++AND+F+LATS D+ +G++ EAC +LWRVLE+LSGF YA
Sbjct: 64 KHTASRLAEEGATVLVHGRRESAVREAVEHV---GGGKGKVEGIVADLSSLRGANHLCDEVLRLTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARRAPKGITCNSLDPGTVNTKMLRAGWGMGGIPVKSANDQFYLATSDDVTDSSGEYXXXXXXXXXXXXXXXXEACRRLWRVLEELSGFSYA 315
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A6V2U0S1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2U0S1_HETAK) HSP 1 Score: 218 bits (556), Expect = 1.110e-63 Identity = 117/256 (45.70%), Postives = 162/256 (63.28%), Query Frame = 2
Query: 2 RHTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAPRGV--TCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
RHT+ +LAE GA V+VHGR A + V+++K + K++ FVAD+S ++ L D++ + +DCLINNAG++EE + + DG E TFAVNV AP+V+T RLL ++ K P G R++ V+S + DF+NLQFEKGGY+ H++Y+LSKL D M E+A R G T N L PG VNTKML GWG+ G V AN+EF LATS D++ + GK+F + + S A EA +LW LE +G Y
Sbjct: 74 RHTSKKLAETGARVIVHGRNTARCEETVQWIKDI-TGNEKIDYFVADLSETSNVHTLADQICEKYSHIDCLINNAGVFEEQFQTTPDGFEMTFAVNVAAPFVLTKRLLPMLQKRP-GSRLIIVSSISQGSRIDFENLQFEKGGYDEHSSYSLSKLCDAMLAFEMAARFGSGAQPTVNTLDPGTVNTKMLLAGWGMCGIPVTRANNEFWLATSPDVEGVNGKYFTSCRESRASQVAYDPEARRRLWEYLERTTGVTY 327
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A7S2V5E2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5E2_9STRA) HSP 1 Score: 210 bits (535), Expect = 3.190e-60 Identity = 119/263 (45.25%), Postives = 167/263 (63.50%), Query Frame = 2
Query: 2 RHTASRLAEAGA----TVLVHGRREASVRDAVEFVKGK----GSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARR-APRGVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
RHT RLA A TV+VHGR A AV++V+ K G +VE VAD+ST+RG+ L ++ AR RLDCLINNAG++E++ + ++D +E TFAVNV+APY++T LLDL+ G R++NV+S +FDNLQF+ GGY+ HAAY+LSKLL +MY+ E A R +T N+L PG VNTKML GWG G V A++EF LATS ++ I G++F+ + S+ A ++L+ +LE ++G Y
Sbjct: 95 RHTCGRLAALAADGDSTVVVHGRDPARCALAVDWVREKSLSAGGGGCRVESIVADISTIRGVASLANQFKARFGRLDCLINNAGVFEQSYQLTEDNLEMTFAVNVMAPYLLTFLLLDLMLP-HKGSRIINVSSISQGYDVNFDNLQFQNGGYSDHAAYSLSKLLMVMYSLESAERIGSPDLTINSLDPGTVNTKMLYAGWGACGIDVSRADNEFWLATSDQVEGINGRYFVGKGDSSASRAAYDSTNRSKLFEILEGITGVSY 356
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A2P6TE58_CHLSO (Short chain dehydrogenase reductase family n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TE58_CHLSO) HSP 1 Score: 206 bits (524), Expect = 1.190e-59 Identity = 119/259 (45.95%), Postives = 165/259 (63.71%), Query Frame = 2
Query: 5 HTASRLAEAGATVLVHGRREASVRDAVEFVK--GKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELA---RRAPRGVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRYA 766
HTA RLA GATVLVHGR V AV V+ G GS + GFVAD+++L + RL +EV A + +D LINNAG++E+ LR S+DG E T+AVNV AP+++T LL+ + + RVV V+S AA+S D+ NLQ E+G ++ H AY+LSKL + ++T ELA R A VTCN L PG VNTKML GWG G V+ AN E AT + +G++F+ +++ PP AR +LWR+LE+ +G +++
Sbjct: 22 HTAQRLAAQGATVLVHGRNPGRVEQAVAAVERAGSGSGGAPPRGFVADLASLAQVRRLAEEVAASSPSVDVLINNAGVFEQQLRKSEDGFELTWAVNVAAPFLLTACLLEAVRE-----RVVVVSSISAASSIDWGNLQQERG-FSAHNAYSLSKLAEQLFTFELADRLRAAGSPVTCNCLDPGTVNTKMLSAGWGSIGIPVKEANYELKAATDPALAGTSGEYFVGGRIARPPSIARDKAEQQRLWRLLEEQTGAKWS 274
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A7M7HP92_STRPU (Uncharacterized protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HP92_STRPU) HSP 1 Score: 202 bits (513), Expect = 4.350e-58 Identity = 109/254 (42.91%), Postives = 161/254 (63.39%), Query Frame = 2
Query: 5 HTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAPR-GVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
HTA +LA+ GATVLVHGR A V V +K K + ++G++AD++ L + RL DE+ A + +D LINNAG+YE+ + S+DG E TFAVNV+AP+++T LLDL+ KA + R+VNV+S ++ D DNLQ + G AY SKL DIM+T ++A R + G+T N L PG VNT+ML WG G A++EFHLAT + +TG++F++ + + A ++ +LW+ L D++G +Y
Sbjct: 18 HTALQLAKTGATVLVHGRALARVEATVADIK-KATGNENIKGYIADLACLANIRRLSDELHASQKHIDVLINNAGVYEKKRQESNDGYELTFAVNVMAPFLLTSLLLDLL-KAGNKSRIVNVSSISQSSFLDLDNLQLKHDYGKGDKAYEQSKLCDIMFTIDMAERFRKDGITVNCLDPGTVNTQMLLKVWGAIGIPTDEADNEFHLATDAKFEDVTGEYFVDMRKTRASAVAYDNQLRGKLWKHLVDITGAQY 269
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A7V5PMF2_9BACT (SDR family oxidoreductase n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V5PMF2_9BACT) HSP 1 Score: 200 bits (509), Expect = 1.700e-57 Identity = 111/256 (43.36%), Postives = 168/256 (65.62%), Query Frame = 2
Query: 2 RHTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAP-RGVTCNALHPGVVNTKMLRNGWGVGGNRV-QNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
+ A LA AG V++HGR+EA + +++ + A ++E V D S+L+ + ++ E+ R + L+ L+NNAG+YE R S+DG E TFAVN LA +++TG LL+L+ R+V V+S A+ DFDNLQ E Y+G+ AYALSKL +I++T ELARR + V N LHPGV++TK+L GWGVGG V Q A +LATS +++ I+G++F + +++ P P AR+++A +LW++ E L+GFRY
Sbjct: 17 KQAALELATAGHKVIIHGRQEARCQATADWISRQ--ADVRIEWVVGDFSSLQQVRQMAGEINRRFQHLNVLVNNAGVYEPQRRLSEDGYEITFAVNHLAHFLLTGLLLNLLFD-HSPARIVTVSSMAHASHLDFDNLQGETS-YSGYGAYALSKLANILFTFELARRLEGKPVQANCLHPGVISTKLLHAGWGVGGADVSQGAQMLVYLATSSEVENISGQYFSDYRITEPAPVARNEQAAKKLWQISEQLTGFRY 268
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A7S0QHA5_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHA5_9CRYP) HSP 1 Score: 202 bits (514), Expect = 2.340e-57 Identity = 113/252 (44.84%), Postives = 161/252 (63.89%), Query Frame = 2
Query: 5 HTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAPRG---VTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLS 751
HTA++LA AG VL+HGR +++A+ ++ + + VE F AD S+LR ++R EVL + + LD LINNAG++ + +R ++DG E TF VNVLAP+++T LL ++AKA GRV+ V+S ++ D+DNLQ EKG ++ H +Y+LSKL + M+ ELAR R V+ N L PG VNTKML GWG G V +ANDEF LAT + ++GK+F+ + P ACA+LWR LE L+
Sbjct: 80 HTATKLANAGYFVLIHGRDPVRIQEALRKIR-LSNPKAGVESFQADFSSLRDVSRFASEVLEQYQCLDLLINNAGVFSQQMRTTEDGNEMTFQVNVLAPFLLTKALLPIVAKA-QAGRVIIVSSISQSSRIDWDNLQMEKG-FSSHESYSLSKLCNAMHALELARATARTAPHVSVNTLDPGTVNTKMLLAGWGYCGMEVADANDEFLLATDPRFEGVSGKYFVGGRERQAAAPCYDAAACAELWRRLEALT 328
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A061S8W3_9CHLO (Short chain dehydrogenase reductase family n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8W3_9CHLO) HSP 1 Score: 196 bits (499), Expect = 5.580e-56 Identity = 113/254 (44.49%), Postives = 155/254 (61.02%), Query Frame = 2
Query: 5 HTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAP-RGVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
HTA LA G +V+VHGR E VRDAV V+ KV + D S+L+ + RL D+V +D L+NNAG+Y+E S DG E T+AVNVLAP+V+T L +++ RVVN AS A +S D DNL EKG ++ H AY+LSKLLDI+ T ELA R + T N L PG VNTKML GWG G V++A DEF+++TS D++ ++G++F+ ++ + P A LWR+ E +G R+
Sbjct: 27 HTAKLLAAGGGSVIVHGRNELRVRDAVAEVERVARGNGKVASYTRDFSSLQEVKRLGDDVKRDFATIDVLVNNAGVYKEGKELSQDGFEMTYAVNVLAPFVLTSALHNIVTS-----RVVNTASISAGHSVDLDNLNQEKG-FSSHNAYSLSKLLDIILTFELAERLKEKPFTVNTLDPGTVNTKMLLAGWGPIGIPVESA-DEFYVSTSPDLEGVSGEYFVGKRRTRAPAAAYDRGLRETLWRLWEQQTGVRF 273
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: UPI001BB1DC6C (retinol dehydrogenase 13-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1DC6C) HSP 1 Score: 196 bits (497), Expect = 1.010e-55 Identity = 105/254 (41.34%), Postives = 158/254 (62.20%), Query Frame = 2
Query: 5 HTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGGYNGHAAYALSKLLDIMYTAELARRAPR-GVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
HTA +LA+ GATVLVHGR A V V +K K + ++G++AD++ L + RL DE+ A + +D LINNAG++EE + S+DG E TFAVNVLAP+++T + DL+ KA R++NV+S A D DN Q + +GH AY SK+ +IM+T ++A R + G+T N L PG VNT+ML WG G V+ A++E+HL+T + +TG++F+ + + A + +LW L D++G +Y
Sbjct: 18 HTALKLAKTGATVLVHGRAPAKVDATVADIK-KVTGNENIKGYIADLAHLASIRRLSDELHASYKHIDVLINNAGVFEEVRKESNDGYEMTFAVNVLAPFLLTSLIQDLL-KAGTKSRIINVSSISQATFLDLDNFQIKDNYGDGHKAYEQSKICEIMFTIDMAERFHKDGITVNCLDPGTVNTRMLLKSWGPVGIPVEEADNEYHLSTDAKYENVTGEYFVGMRKTRASTVAYDKKLREKLWNHLVDITGAQY 269
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Match: A0A835YNH2_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH2_9STRA) HSP 1 Score: 196 bits (497), Expect = 1.320e-55 Identity = 117/258 (45.35%), Postives = 156/258 (60.47%), Query Frame = 2
Query: 2 RHTASRLAEAGATVLVHGRREASVRDAVEFVKGKGSATSKVEGFVADVSTLRGMNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVITGRLLDLIAKAPDGGRVVNVASHVAANSADFDNLQFEKGG---YNGHAAYALSKLLDIMYTAELARR-APRGVTCNALHPGVVNTKMLRNGWGVGGNRVQNANDEFHLATSGDIKAITGKFFINRKLSTPPPPARSDEACAQLWRVLEDLSGFRY 763
RHTA++LA GATVLVHGR + + AVE VK K S+ +V G +AD+STL GM L V T LD L++NAGI+E R ++DG E FA NVLAP+V TG LL L+ +A RV+ V+S +A + QFE+ G ++ H +Y+LSKL D M + E R A +T N L PG VNTKML GWG+ G V AND++ LATS ++K ++GK+FI+ + + P A QLW +SGF Y
Sbjct: 24 RHTATKLATDGATVLVHGRNQERLAKAVEGVK-KQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLL-RASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 279 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8098.15757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8098.15757.1 >prot_H-elongata_contig8098.15757.1 ID=prot_H-elongata_contig8098.15757.1|Name=mRNA_H-elongata_contig8098.15757.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp MNRLCDEVLARTERLDCLINNAGIYEENLRHSDDGVEFTFAVNVLAPYVIback to top mRNA from alignment at H-elongata_contig8098:563..3760+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8098.15757.1 ID=mRNA_H-elongata_contig8098.15757.1|Name=mRNA_H-elongata_contig8098.15757.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3198bp|location=Sequence derived from alignment at H-elongata_contig8098:563..3760+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8098:563..3760+ >mRNA_H-elongata_contig8098.15757.1 ID=mRNA_H-elongata_contig8098.15757.1|Name=mRNA_H-elongata_contig8098.15757.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig8098:563..3760+ (Himanthalia elongata Himel1 dioecious)back to top |