mRNA_H-elongata_contig80963.15752.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig80963.15752.1 vs. uniprot
Match: D7G5I9_ECTSI (Zeaxanthin epoxidase, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I9_ECTSI) HSP 1 Score: 218 bits (554), Expect = 9.430e-66 Identity = 103/131 (78.63%), Postives = 109/131 (83.21%), Query Frame = 1
Query: 10 GVTVKLKDGGEMHTDILIGADGIWSQASKRIAPHRTACARMYFYMSVRAQMWDEDARGENGGATYSGYTVFAGETVYAPKDYWDVGYKVYIGPGQYFVTSDIGRGRMQWYSFLALPPGSKSREDNIKYLKD 402
GVTVKLKDGGE+H D+L+GADGIWSQ VRAQMW+ED RGENGGATYSGYTVFAGET+YAPKDYWDVGYKVYIGPGQYFVTSDIGRGRMQWY+FLALPPGSKSREDNIKYLKD
Sbjct: 245 GVTVKLKDGGEVHADVLVGADGIWSQ--------------------VRAQMWNEDVRGENGGATYSGYTVFAGETIYAPKDYWDVGYKVYIGPGQYFVTSDIGRGRMQWYAFLALPPGSKSREDNIKYLKD 355
BLAST of mRNA_H-elongata_contig80963.15752.1 vs. uniprot
Match: A0A835YX74_9STRA (Zeaxanthin epoxidase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX74_9STRA) HSP 1 Score: 180 bits (456), Expect = 1.800e-51 Identity = 88/132 (66.67%), Postives = 99/132 (75.00%), Query Frame = 1
Query: 10 GVTVKLKDGGEMHTDILIGADGIWSQASKRIAPHRTACARMYFYMSVRAQMWDEDAR-GENGGATYSGYTVFAGETVYAPKDYWDVGYKVYIGPGQYFVTSDIGRGRMQWYSFLALPPGSKSREDNIKYLKD 402
GV V L+ G MH D+LIGADGIWSQ VRAQMWDE + G+N GATYSGYTVFAGET+Y P+DYWDVGYKVYIGPGQYFVTSDIG+GRMQWY+FLALP G+K+R+DNI YLKD
Sbjct: 227 GVEVLLEGGKTMHGDVLIGADGIWSQ--------------------VRAQMWDEPVKNGKNSGATYSGYTVFAGETIYEPRDYWDVGYKVYIGPGQYFVTSDIGQGRMQWYAFLALPAGTKARDDNILYLKD 338
BLAST of mRNA_H-elongata_contig80963.15752.1 vs. uniprot
Match: A0A7S0TSL7_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TSL7_HEMAN) HSP 1 Score: 152 bits (385), Expect = 4.620e-41 Identity = 74/129 (57.36%), Postives = 89/129 (68.99%), Query Frame = 1
Query: 10 GVTVKLKDGGEMHTDILIGADGIWSQASKRIAPHRTACARMYFYMSVRAQMWDEDARGENGGATYSGYTVFAGETVYAPKDYWDVGYKVYIGPGQYFVTSDIGRGRMQWYSFLALPPGSKSREDNIKYL 396
GV LKDG E+ DIL+G+DGIWS S+RAQMW++DARG N G TYSGYT FAG+T+ Y+DVGY+VYIGPG+YFVTSD+G+GR QWY+FLALP GSKSR N +YL
Sbjct: 239 GVKATLKDGTEVTGDILVGSDGIWS--------------------SIRAQMWNQDARGPNSGTTYSGYTCFAGDTIQKTDYYFDVGYQVYIGPGKYFVTSDVGKGRTQWYAFLALPEGSKSRASNKEYL 347
BLAST of mRNA_H-elongata_contig80963.15752.1 vs. uniprot
Match: L1JNY8_GUITC (Zeaxanthin epoxidase, plastid-targeted n=5 Tax=Guillardia theta TaxID=55529 RepID=L1JNY8_GUITC) HSP 1 Score: 151 bits (381), Expect = 1.470e-40 Identity = 70/132 (53.03%), Postives = 92/132 (69.70%), Query Frame = 1
Query: 7 RGVTVKLKDGGEMHTDILIGADGIWSQASKRIAPHRTACARMYFYMSVRAQMWDEDARGENGGATYSGYTVFAGETVYAPKDYWDVGYKVYIGPGQYFVTSDIGRGRMQWYSFLALPPGSKSREDNIKYLKD 402
+GV V L+DG D+L+GADGIWS ++RAQ+W++DA+G G TYSGYT FAG+T+ P Y+DVGY+VYIGPG+YFVTSD+GRGR QWY+FLALP G+KSR N++YL++
Sbjct: 222 KGVKVYLEDGTCEEADVLVGADGIWS--------------------TIRAQLWNQDAKGPKSGTTYSGYTCFAGDTIQRPDYYFDVGYQVYIGPGKYFVTSDVGRGRTQWYAFLALPEGTKSRASNLEYLQE 333
BLAST of mRNA_H-elongata_contig80963.15752.1 vs. uniprot
Match: A0A7S0F566_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F566_9CRYP) HSP 1 Score: 150 bits (379), Expect = 2.950e-40 Identity = 70/132 (53.03%), Postives = 91/132 (68.94%), Query Frame = 1
Query: 7 RGVTVKLKDGGEMHTDILIGADGIWSQASKRIAPHRTACARMYFYMSVRAQMWDEDARGENGGATYSGYTVFAGETVYAPKDYWDVGYKVYIGPGQYFVTSDIGRGRMQWYSFLALPPGSKSREDNIKYLKD 402
+GV V ++DG D+L+GADGIWS +VRAQ+W++DA+G G TYSGYT FAG+T+ P Y+DVGY+VYIGPG+YFVTSD+GRGR QWY+FLALP G+KSR N +YL++
Sbjct: 225 KGVKVYMEDGTSEEADVLVGADGIWS--------------------TVRAQLWNQDAKGPESGTTYSGYTCFAGDTIQKPDYYFDVGYQVYIGPGKYFVTSDVGRGRTQWYAFLALPEGTKSRASNRQYLQE 336
BLAST of mRNA_H-elongata_contig80963.15752.1 vs. uniprot
Match: A0A7S0VSE2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VSE2_9CRYP) HSP 1 Score: 149 bits (375), Expect = 1.130e-39 Identity = 71/129 (55.04%), Postives = 87/129 (67.44%), Query Frame = 1
Query: 10 GVTVKLKDGGEMHTDILIGADGIWSQASKRIAPHRTACARMYFYMSVRAQMWDEDARGENGGATYSGYTVFAGETVYAPKDYWDVGYKVYIGPGQYFVTSDIGRGRMQWYSFLALPPGSKSREDNIKYL 396
GV LKDG ++ D+L+G+DGIWS ++RAQMWD+D+RG G TYSGYT FAG+T+ Y+DVGY+VYIGPG+YFVTSD+GRGR QWY+FLALP GSKSR N YL
Sbjct: 230 GVRATLKDGTQVTGDVLVGSDGIWS--------------------AIRAQMWDQDSRGPKSGTTYSGYTCFAGDTIQRTDYYFDVGYQVYIGPGKYFVTSDVGRGRTQWYAFLALPEGSKSRASNKDYL 338
BLAST of mRNA_H-elongata_contig80963.15752.1 vs. uniprot
Match: A0A1Q9F2I6_SYMMI (Zeaxanthin epoxidase, chloroplastic n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9F2I6_SYMMI) HSP 1 Score: 145 bits (366), Expect = 9.680e-38 Identity = 67/129 (51.94%), Postives = 87/129 (67.44%), Query Frame = 1
Query: 4 FRGVTVKLKDGGEMHTDILIGADGIWSQASKRIAPHRTACARMYFYMSVRAQMWDEDARGENGGATYSGYTVFAGETVYAPKDYWDVGYKVYIGPGQYFVTSDIGRGRMQWYSFLALPPGSKSREDNIK 390
+ GV +K +DG E D+LIGADGIWS + RAQMW+ED +G N G TYSGY VFAGET+Y P DY+DVGYKVY+GP +YFVTSD+GRGR+QWY+F+A+ G + D+++
Sbjct: 4533 YEGVNIKTEDGTEYKADVLIGADGIWS--------------------ATRAQMWNEDQKGPNSGCTYSGYIVFAGETIYKPDDYFDVGYKVYMGPKRYFVTSDVGRGRIQWYAFVAVGEGEEVPSDSLE 4641
BLAST of mRNA_H-elongata_contig80963.15752.1 vs. uniprot
Match: A0A812J6N4_9DINO (Hypothetical protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812J6N4_9DINO) HSP 1 Score: 144 bits (363), Expect = 2.280e-37 Identity = 67/129 (51.94%), Postives = 86/129 (66.67%), Query Frame = 1
Query: 4 FRGVTVKLKDGGEMHTDILIGADGIWSQASKRIAPHRTACARMYFYMSVRAQMWDEDARGENGGATYSGYTVFAGETVYAPKDYWDVGYKVYIGPGQYFVTSDIGRGRMQWYSFLALPPGSKSREDNIK 390
+ GV +K +DG E D+LIGADGIWS + RAQMW+ED +G N G TYSGY VFAGET+Y P DY+DVGYKVY+GP +YFVTSD+GRGR+QWY+F+A+ G + D ++
Sbjct: 583 YEGVNIKTEDGTEYKADVLIGADGIWS--------------------ATRAQMWNEDQKGPNSGCTYSGYIVFAGETIYKPDDYFDVGYKVYMGPKRYFVTSDVGRGRIQWYAFVAVGEGEEVPSDALE 691
BLAST of mRNA_H-elongata_contig80963.15752.1 vs. uniprot
Match: A0A812TWS9_SYMPI (ABA2 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812TWS9_SYMPI) HSP 1 Score: 143 bits (360), Expect = 5.840e-37 Identity = 67/129 (51.94%), Postives = 87/129 (67.44%), Query Frame = 1
Query: 4 FRGVTVKLKDGGEMHTDILIGADGIWSQASKRIAPHRTACARMYFYMSVRAQMWDEDARGENGGATYSGYTVFAGETVYAPKDYWDVGYKVYIGPGQYFVTSDIGRGRMQWYSFLALPPGSKSREDNIK 390
F GV VK +DG E D+LIGADGIWS + RAQMW+E+ +G G TYSGY VFAGET+Y P+DY++VGYKVY+GP +YFVTSD+GRGR+QWY+F+A+ G + DN++
Sbjct: 632 FEGVKVKTEDGTEYKGDVLIGADGIWS--------------------ATRAQMWNEEQKGPGSGCTYSGYIVFAGETIYKPEDYFEVGYKVYMGPKRYFVTSDVGRGRIQWYAFVAVGEGEEVPSDNLE 740
BLAST of mRNA_H-elongata_contig80963.15752.1 vs. uniprot
Match: A0A813IYI5_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IYI5_POLGL) HSP 1 Score: 136 bits (343), Expect = 2.040e-36 Identity = 67/135 (49.63%), Postives = 86/135 (63.70%), Query Frame = 1
Query: 4 FRGVTVKLKDGGEMHTDILIGADGIWSQASKRIAPHRTACARMYFYMSVRAQMWDEDARGENGGATYSGYTVFAGETVYAPKDYWDVGYKVYIGPGQYFVTSDIGRGRMQWYSFLALPPGS---KSREDNIKYLK 399
+ GV V+ K G + D+LIG DGIWS ++RAQMWDED +G G TYSGY VFAGET+Y P DY+DVGYKVY+GP +YFVTSD+GRGR+QWY+F+A+ G +S + Y+K
Sbjct: 215 YAGVKVQTKGGEDAVCDVLIGNDGIWS--------------------AIRAQMWDEDQKGPGSGCTYSGYIVFAGETIYKPDDYFDVGYKVYMGPKRYFVTSDVGRGRIQWYAFVAVGEGEQVPRSPREKKDYVK 329 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80963.15752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80963.15752.1 >prot_H-elongata_contig80963.15752.1 ID=prot_H-elongata_contig80963.15752.1|Name=mRNA_H-elongata_contig80963.15752.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp MFRGVTVKLKDGGEMHTDILIGADGIWSQASKRIAPHRTACARMYFYMSVback to top mRNA from alignment at H-elongata_contig80963:410..2017+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80963.15752.1 ID=mRNA_H-elongata_contig80963.15752.1|Name=mRNA_H-elongata_contig80963.15752.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1608bp|location=Sequence derived from alignment at H-elongata_contig80963:410..2017+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80963:410..2017+ >mRNA_H-elongata_contig80963.15752.1 ID=mRNA_H-elongata_contig80963.15752.1|Name=mRNA_H-elongata_contig80963.15752.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig80963:410..2017+ (Himanthalia elongata Himel1 dioecious)back to top |