mRNA_H-elongata_contig80898.15746.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: A0A6H5JSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC7_9PHAE) HSP 1 Score: 206 bits (525), Expect = 4.490e-55 Identity = 164/410 (40.00%), Postives = 226/410 (55.12%), Query Frame = 3
Query: 207 MADTEAARLREKDLATRLTDAVRGRNIKIAEDLLLEGASVHGSVEIYVPPLIVAAETGNAKMMKLLLDRGADPDQCIRKEIISPFEIR-LARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLL-GQGMEAIGAVRAVGRVAFKVVS--EGRANILRMILDAVGEEQREQLSASKFMNTSLLQRAVANRDLSIVRVLLAFGAAETACDAYGKLMMDIVLANEPKDKSDPKNTYAICSMLDRAPALLARSWLWP----------TCYATTKNASNG 1394
++ T A + + LA +L +R RN E L GASV GS E+ P+I AA +G+ M LL+ R A+ D ++ + L +G R+L+VA+ H++ R+LL+AGA+P++ + +G TPLM+ C L D A R XXXXXXXXXXXX TA+ FAA + DL+DI+L+ AP+TL+R + +G TPL AA +G ++VS LLSAGA +M CPL AAV H EVVRVLL +GMEAI + R S +GRA+I+RM+L A G E+ + ++ +L AV+ ++S RVLLA GA ETA + G+ ++V N P + DP AI ML R PA ARSW WP TC A A+ G
Sbjct: 105 LSTTMARSVTKPQLAAQLLAYIRQRNEAGVERTLAAGASVDGSSELDWRPIIAAAASGSVGMADLLIKRQANVDLGSLNDLRCSDGLEVLGKGVRALHVAINHYHVDVFRLLLKAGADPDSANGKGLTPLMLTCI--LEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTDLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDM---CPLVAAVRENHQEVVRVLLTDRGMEAIDGPDVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDPVLHCAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLARGPAYRARSWAWPATARAYTAGHTCAAAATTAAPG 509
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D8LSK8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK8_ECTSI) HSP 1 Score: 206 bits (523), Expect = 7.630e-55 Identity = 163/417 (39.09%), Postives = 228/417 (54.68%), Query Frame = 3
Query: 186 RRFDEETMADTEAARLREKDLATRLTDAVRGRNIKIAEDLLLEGASVHGSVEIYVPPLIVAAETGNAKMMKLLLDRGADPDQCIRKEIISPFEIR-LARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLL-GQGMEAIGAVRAVGRVAFKVVS--EGRANILRMILDAVGEEQREQLSASKFMNTSLLQRAVANRDLSIVRVLLAFGAAETACDAYGKLMMDIVLANEPKDKSDPKNTYAICSMLDRAPALLARSWLWP----------TCYATTKNASNG 1394
R + ++ T A + LA +L +R RN E L GASV GS E+ P+I AA + M +LL+ R AD D ++ + L +G R+L+VA+ +++ R+LL+AGA+P++ + +G TPLM+ C L D A R XXXXXXXXXXXX TA+ FAA + +L+DI+L+ AP+TL+R + +G TPL AA +G ++VS LLSAGA +M CPL AAV H EVVRVLL +GM+AIG + R S +GRA+I+RM+L A G E+ + ++ +L AV+ ++S RVLLA GA ETA + G+ ++V N P + DP AI ML+R PA ARSW WP TC A A+ G
Sbjct: 90 RSLEPSPLSTTMARSATKPQLAAQLLAYIRQRNEAGVERTLAAGASVDGSSELDWRPIIAAAASCKVGMAELLIKRKADVDLGSLNDLRCSDGLEVLGKGVRALHVAINHYNVDVFRLLLKAGADPDSANGKGLTPLMLTCI--LEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTNLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDM---CPLVAAVRENHQEVVRVLLTDRGMKAIGGADVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDPVLHSAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLERGPAYRARSWAWPATARAYTAGHTCAAAATTAAPG 501
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D8LDZ2_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ2_ECTSI) HSP 1 Score: 166 bits (419), Expect = 7.760e-42 Identity = 152/416 (36.54%), Postives = 215/416 (51.68%), Query Frame = 3
Query: 255 RLTDAVRGRNIKIAEDLLLEGASVHGSVEIYVPPLIVAAETGNAKMMKLLLDRGADPDQCIRKEIIS-------PFEIRLARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGA-SNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIGAVRAVGRVAFKVVSEGRANILRMILDAVGEEQREQLSASKFMN-TSLLQRAVANRDLSIVRVLLAFGAAETACDAYGKLMMDIVLANEPKDKSDPKNTYAICSMLDRAPALLARSWLW-------PTCYATTKNASNGEEKAILYVRISRSKNRDLYA 1454
RL V +++ A ++L GA+ G+ E PL +AA G ++KLL+D GAD D + + PFE GT L+ A+ E+L+A R+LL AGA+PN D +G TPLM+ C + + T XXXXXXXXXXXXXX TA+H AA N DLL ++L APST++ + G T L AA G +VS LLSAGA N S+F + L AV+ GH++VVRVLL +G++A+G A+ + + + IL+M+LD GE++R + + + + T L A A L +LL GA E + K V A P +K +P + A+C +L+R PA ARSW W P T + G +A L VRI R ++
Sbjct: 9 RLLHHVEKGSLQGAIEMLKAGANADGTSEAATSPLFLAANRGRIDILKLLIDNGADLDGTSSLDKFADGFTGNLPFE----GGTTPLHGALAGENLDALRLLLLAGADPNLADGKGCTPLMMTCLKYFRAKNYVL---TAXXXXXXXXXXXXXXXXXXXTALHVAATFNAPDLLGLLLSRAPSTVNLPNKKGVTALCYAASEGMEVAVSCLLSAGARDNPSLFA----NGIGSLLIAVELGHEQVVRVLLDRGVQAVGGELAMSYALRRSILKRFPRILQMLLDVEGEQKRVKWARLRHTDGTPALHLAAACESLVAASILLQAGADEGTANGLDKGASCCVGAALPANKKNPDTSAAVCRLLERGPAFRARSWAWAAESSEAPAASGTVCSMKGG--RATLDVRIFRPTGNQFFS 411
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: A0A6H5JAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW5_9PHAE) HSP 1 Score: 147 bits (370), Expect = 6.030e-36 Identity = 107/323 (33.13%), Postives = 169/323 (52.32%), Query Frame = 3
Query: 258 LTDAVRGRNIKIAEDLLLEGASVHGSVEIYVPPLIVAAETGNAKMMKLLLDRGADPDQCIRKEIISPFEIRL-ARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIGAVRAVGRVAFKVVSEGRANILRMILDAVGEEQREQLSASKFMNTSLLQRAVANRDLSIVRVLLAFGAAETACD 1223
L + ++G + E L L GAS+ G +I+ PL AA G A ++ LL RGA+ + +++ + + + G+ +++ AV +++ R LL+AGA+PNA D G+TPLM CR A R + G A+H+A+ +D D++ ++L A +TL++ + G TPL AA G ESV LLS GAS+ +++ A L AV G E+VR+LL GM+A+G + AV + + +G A IL M+L GEE R Q + + ++LL A + LS++ +L+ GA E A D
Sbjct: 10 LVEVLKGNERGVEEQLDL-GASLDG-FDIW-KPLFAAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSPAVHAAVYARRVDSLRALLDAGADPNAADATGHTPLMQACR-----LFGAADRYVVVRELLRGGADPARQSDNGMIALHYASFRDDTDVIGLLLPKAMATLNQDTGYGGTPLCCAASGGYKESVRCLLSFGASDNALWSKKG---ASALVGAVQEGRQEIVRILLDHGMDAVGGLGAVPKAIWTATRKGHAKILHMLLAVAGEETRRQWATMPYNESTLLHCATSVGSLSVMSAILSAGADERARD 321
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D8LMA9_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA9_ECTSI) HSP 1 Score: 118 bits (296), Expect = 9.070e-26 Identity = 101/332 (30.42%), Postives = 153/332 (46.08%), Query Frame = 3
Query: 303 LLLEGASVHGSVEIYVPPLIVAAETGNAKMMKLLLDRGADPDQCIRKEIISPF----EIRLARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIGAVRAVGRVAFKVVSEGRANILRMILDAVGEEQRE--------------QLSASKFMNTSLL-------QRAVANRDLSIVRVLLAFGAAETACD 1223
+L EGASVH + V P+ VA + G ++K L+ GAD + + + E G +LY+A + + A +LL+ GANPNATD +G TP+MV C V +++T + G A+H AAG D ++ ++L APSTL+ + NG TPL AAE GN ++S L S GAS+ + + L AV G VR LL G++A+G + + V G + L M+L+ GE+++E L + F T++L A + + + VLL+ GA CD
Sbjct: 1 MLEEGASVHDFGDAVVRPIAVATDYGLIDIIKALVATGADTEAPCWSDKDGAWKGNPEWSYRNGFTALYIAPAVGNAGALLVLLQLGANPNATDSDGGTPIMVTCGTGSVTS----TKLTMMRSLLKAGADLAVENELGGLAIHIAAGRCDAQVVALLLSMAPSTLNNATHNGLTPLAAAAEKGNESTMSLLFSEGASDSLPWATTGIT---ALHKAVIVGMGTSVRFLLENGLDAVGGLPGIAEAIRISVWFGCIDGLEMLLNVHGEKKQEFWAKHYVFGVQDDSLLGSVPFSITAILCEWYPILHYAAKHYSIPALHVLLSAGAIPETCD 325
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D7FLL0_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL0_ECTSI) HSP 1 Score: 117 bits (293), Expect = 8.420e-25 Identity = 114/412 (27.67%), Postives = 188/412 (45.63%), Query Frame = 3
Query: 363 VAAETGNAKMMKLLLDRGA-------DPDQCIRKEIISPFEIRLARGTRSLYVAVLM-EHLNATRMLLEAGANPNATDVEGNTPLMVLCR----GRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIGAVRAVGRVAFK-VVSEGRANILRMILDAVGEEQREQLSASKF-MNTSLLQRAVANRDLSIVRVLLAFGAAETACDAYGKLMMDIV----LANEPKDK---------SDPKNTYAICSMLDRAPALLARSWLWP-----------------TCYATTKNASNGEE-KAILYVRISRSKNRDLYAKIL 1463
+AA ++ +LL++RGA +P R+ +++ + + +G + + A+ + ++ +LL AGA+P+A + G TPLM L R G ++ A L G+TA A + + + +L +P+ L R++W+G + L +A G+ VS LLS GA + + CPLA A+ +GH+++V++LL + A+G V +A +++ R ILRM+L+ GEE + + S + + SLL + + V LLA GA E A D G+ +D++ L N P DP I ++RAPA ARSW WP TC TK + G + + L V+I R + L + IL
Sbjct: 1 MAAVHAQTEIAQLLIERGAHVNAGVTNPSMGTRERVVNSTFLPM-QGENAFHAAICFAKKMDLVDLLLRAGADPSAGNKLGITPLMCLAREEPPGPWLECA--------LEVLIKAGVNPDQVDAEGWTAFLHAVEVGNPEKIRRILALSPAALGRIAWDGMSALYVACNEGHLSVVSCLLSLGAKHPRTTIRDH----CPLAVAIIKGHEDIVKILLAN-LSAVGGVELAAEMALTCAITQSRGKILRMMLNITGEENAARWADSDWGLAGSLLHYSCGYILPASVSALLAAGANENATDQAGQRPIDVIGTMDLQNPPLSPLHPRTPTRFRDPVKEAEIRRTVERAPAFRARSWAWPAFEWAGCSTTAAICGSSTCNGLTKASGQGRKTRTPLVVQIHRPERNKLLSGIL 398
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D8LME7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME7_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 5.720e-16 Identity = 65/212 (30.66%), Postives = 103/212 (48.58%), Query Frame = 3
Query: 468 RLARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIGAVRAVGRVAFKVVSEGRANILRMILDAVGEEQR 1103
++ +G + AV++ + A + +L AGA+PN D G L V C +R I R +A+H AA +L +L AP+TL+ V+ G TPL A G ++V+ LLS GAS++ VF+ L AV GHD ++ +LLG+G+EA+G + ++ V++ R L ++L GEE+R
Sbjct: 12 KIPKGLGLVSAAVIVRRIPALQCVLRAGADPNTPDGVGCNALQVACFDGDDERRLCIVRELLKWGANPNLRGGPYG-----SALHTAAKEGHTNLFTTLLAAAPATLNLVNEQGLTPLGTATSFGRHKAVTCLLSLGASDRQVFQETRSG---SLQEAVVAGHDTLLSLLLGKGLEAVGGLDSIPDAMGCAVTKSRTRTLNLLLSVEGEERR 215
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D7FVH7_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH7_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 1.130e-14 Identity = 65/208 (31.25%), Postives = 105/208 (50.48%), Query Frame = 3
Query: 390 MMKLLLDRGADPDQCIRKEIISPFEIR--LARGTRSLYVAVLMEHLNATRMLLEAGANPNATDVEGNTPLMVLCRGRLVDRATAISRITFLXXXXXXXXXXXXXXIFGFTAMHFAAGSNDVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSV-FELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIG 1004
M++ LL+ GAD + + + R L +G R+++VAV+ ++L++AGAN + T G TPLM C+ R+ + + + + + +A + + +L AP+T+++V+ +G+TPL MA+ G E+VS LLSAGA + FE CPL AV + +VVRVLL G+ AIG
Sbjct: 1 MIECLLNNGADVNAASPLMLHQGEDGRMSLCQGVRAIHVAVIHHDRKCLKVLIDAGANLDVTYSGGVTPLMAACKMRVEEHGIEMVKEVIEAGANPLIQDNKR-----WACLWYAINLGRIRTIQTILSVAPTTVNQVAPDGSTPLYMASGFGQYEAVSLLLSAGAKQTRLSFEKGK----CPLDVAVRQNRTDVVRVLLSDGLHAIG 199
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D8LME8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME8_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 1.190e-10 Identity = 62/204 (30.39%), Postives = 89/204 (43.63%), Query Frame = 3
Query: 753 LDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLGQGMEAIGAVRAVGRVAFKVVSEGRANILRMILDAVGEEQREQLSASKFMNTS-LLQRAVANRDLSIVRVLLAFGAAETACDAYGKLMMDIVLANEPKDKSDPKNTYAICSMLDRAPALLARSWLWPT 1361
+D++LR APS LD+ G TPL A + G+ SVSRLLSAGA++ + FA LA D+ A IL+M+L AV + + ++ +N+ LL+ A + VLLA GA ET G+ D++ P + DP+ AI ML + +RS WPT
Sbjct: 1 MDLLLRVAPSRLDQADNYGVTPLCCAVQGGHENSVSRLLSAGATS--------LRFAMELAVRFDQ-----------------------------------ARILKMLLTAVHAGESDGPGVAEVVNSGPLLRLAALHGHPGATHVLLAAGADETRETDRGERARDLIGIFVPDCERDPEKEAAIGRMLQQGAVFRSRSLAWPT 161
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Match: D8LSL4_ECTSI (Ion channel nompc n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSL4_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 6.620e-10 Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 3
Query: 741 DVDLLDIMLRTAPSTLDRVSWNGTTPLLMAAEAGNAESVSRLLSAGASNKSVFELPNMDFACPLAAAVDRGHDEVVRVLLG--QGMEAIGAV 1010
D + + ++L APST++R + G TPL +A E G A+ VSRLLSA A++K + CPLA A GH+ VVRVLLG + ++A G V
Sbjct: 4 DTESITLLLEAAPSTMNRATKGGMTPLCVACEFGQAQVVSRLLSAEATSKWM--------PCPLATATANGHESVVRVLLGTKERIKAFGGV 87 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80898.15746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80898.15746.1 >prot_H-elongata_contig80898.15746.1 ID=prot_H-elongata_contig80898.15746.1|Name=mRNA_H-elongata_contig80898.15746.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=422bp MADTEAARLREKDLATRLTDAVRGRNIKIAEDLLLEGASVHGSVEIYVPPback to top mRNA from alignment at H-elongata_contig80898:1112..2877+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80898.15746.1 ID=mRNA_H-elongata_contig80898.15746.1|Name=mRNA_H-elongata_contig80898.15746.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1766bp|location=Sequence derived from alignment at H-elongata_contig80898:1112..2877+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80898:1112..2877+ >mRNA_H-elongata_contig80898.15746.1 ID=mRNA_H-elongata_contig80898.15746.1|Name=mRNA_H-elongata_contig80898.15746.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2532bp|location=Sequence derived from alignment at H-elongata_contig80898:1112..2877+ (Himanthalia elongata Himel1 dioecious)back to top |