mRNA_H-elongata_contig80838.15742.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80838.15742.1
Unique NamemRNA_H-elongata_contig80838.15742.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80838.15742.1 vs. uniprot
Match: D7FPQ8_ECTSI (Kinesin K39 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ8_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 9.750e-47
Identity = 94/151 (62.25%), Postives = 116/151 (76.82%), Query Frame = 1 
Query:    1 QEMMMEIMDKYVQASEALAEKENDVRQLKKQVAIIGAQNSHLNSRAEQLMEANEKLADDEGRWCSLARELQDQMDVIKKGETYTLFQDKVDEAEARLEVAKEAGDLNKKRLHQMYGIVSDYFEASISDAA---VDENRLHATILEQLRDLQ 444
            ++MMMEIMDKYV A EALAE+ENDVR L KQV  + A N  L +   +L  +NEKLADDEGRW SLAREL++QM+VIKKGETYTLFQDKVDEAEARLEVA +A    +KRL ++YG +S  F+   +D +   VDE+R HAT+L+QLR L+
Sbjct:   45 EDMMMEIMDKYVHAGEALAERENDVRHLSKQVKAVRADNKELEAEVARLTTSNEKLADDEGRWYSLARELENQMEVIKKGETYTLFQDKVDEAEARLEVATDANSTCRKRLFEVYGAISPDFQDKTNDGSDEDVDEHRQHATVLDQLRRLK 195
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BLAST of mRNA_H-elongata_contig80838.15742.1 vs. uniprot
Match: D7FYN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN2_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.990e-15
Identity = 59/151 (39.07%), Postives = 79/151 (52.32%), Query Frame = 1 
Query:    1 QEMMMEIMDKYVQASEALAEKENDVRQLKKQVAIIGAQNSHLNSRAEQLMEANEKLADDEGRWCSLARELQDQMDVIKK---GETYTLFQDKVDEAEARLEVAKEAGDLNKKRLHQMYGIVSDYFEASISDAAVDENRLHATILEQLRDLQ 444
            ++M++E+MDK   A EALAE+E+DVRQL KQV    A N  L +   +L  +NEKLADDEGRW S+ARELQ +M+  +K     + T  QDK ++                                  S   VDE R H+T L+QLR L+
Sbjct:   45 EDMIVELMDKSFHAGEALAEREHDVRQLSKQVKAAKATNQQLETEVARLTTSNEKLADDEGRWHSIARELQSRMEAFRKVYGAISATGVQDKSNDG---------------------------------SGEDVDEQRQHSTALDQLRWLK 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80838.15742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPQ8_ECTSI9.750e-4762.25Kinesin K39 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
D7FYN2_ECTSI3.990e-1539.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80838contigH-elongata_contig80838:1205..2768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size456
Cds size450
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80838.15742.1prot_H-elongata_contig80838.15742.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80838 1211..2768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931214.8100586-UTR-H-elongata_contig80838:1204..12101622931214.8100586-UTR-H-elongata_contig80838:1204..1210Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80838 1205..1210 +
1691679744.8275373-UTR-H-elongata_contig80838:1204..12101691679744.8275373-UTR-H-elongata_contig80838:1204..1210Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80838 1205..1210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931214.8237815-CDS-H-elongata_contig80838:1210..12971622931214.8237815-CDS-H-elongata_contig80838:1210..1297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80838 1211..1297 +
1691679744.837257-CDS-H-elongata_contig80838:1210..12971691679744.837257-CDS-H-elongata_contig80838:1210..1297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80838 1211..1297 +
1622931214.84061-CDS-H-elongata_contig80838:1894..20381622931214.84061-CDS-H-elongata_contig80838:1894..2038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80838 1895..2038 +
1691679744.8467233-CDS-H-elongata_contig80838:1894..20381691679744.8467233-CDS-H-elongata_contig80838:1894..2038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80838 1895..2038 +
1622931214.861306-CDS-H-elongata_contig80838:2241..23331622931214.861306-CDS-H-elongata_contig80838:2241..2333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80838 2242..2333 +
1691679744.8572164-CDS-H-elongata_contig80838:2241..23331691679744.8572164-CDS-H-elongata_contig80838:2241..2333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80838 2242..2333 +
1622931214.8794281-CDS-H-elongata_contig80838:2641..27681622931214.8794281-CDS-H-elongata_contig80838:2641..2768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80838 2642..2768 +
1691679744.8691504-CDS-H-elongata_contig80838:2641..27681691679744.8691504-CDS-H-elongata_contig80838:2641..2768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80838 2642..2768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80838.15742.1

>prot_H-elongata_contig80838.15742.1 ID=prot_H-elongata_contig80838.15742.1|Name=mRNA_H-elongata_contig80838.15742.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
MMMEIMDKYVQASEALAEKENDVRQLKKQVAIIGAQNSHLNSRAEQLMEA
NEKLADDEGRWCSLARELQDQMDVIKKGETYTLFQDKVDEAEARLEVAKE
AGDLNKKRLHQMYGIVSDYFEASISDAAVDENRLHATILEQLRDLQLLVK
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mRNA from alignment at H-elongata_contig80838:1205..2768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80838.15742.1 ID=mRNA_H-elongata_contig80838.15742.1|Name=mRNA_H-elongata_contig80838.15742.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1564bp|location=Sequence derived from alignment at H-elongata_contig80838:1205..2768+ (Himanthalia elongata Himel1 dioecious)
CAGGAGATGATGATGGAGATCATGGACAAGTACGTTCAAGCAAGCGAGGC
TTTGGCTGAGAAGGAGAACGATGTAAGGCAGCTTAAGAAGCAGGTGCGGA
TTGGAGATGTGACAGGATGATACCGTCATACGTTAAACCTACCGTTACCC
ATTGGGCAAACACACCTACTCCTTACTGCCTACTGCCTACTGTAATATAT
TCCCCTCACGGCGGGGAACCCTTCGAATGGTCAACAGGGTTCGGAATAAA
AGGGAAACATCAAAGGAAGAATATTAAAAAGGGAGGGGTGGGGGCATGGC
TAACTCTGCGACGACAACACCAAATCATTTGAGTCGGTATCCATCGAAGC
CATAACCCATCTCCCGCGATGGGGTTATTTTCGCATCTTAAGGAGGATTC
TATTTTTGAGGATTCGTGAAAATGCAGGCAATAACTACAGCTACTCAACC
ATCAACCATACAGTATTTCCTGTTTTTGTTGTTTTTCGCCGGCCGCGCTC
GTCGATGGCAATGTCTTCCTTGTCTTAACAAGCGTCAAGTAGATTTGTTG
CTCATACTTATTGAATCTACTGCAGTAATCGTAATGAACACTACACGCTA
TTATATAATAGTGCTTTTAAAGTGAGTCTTTGTAGTAAATACATTGGTTT
GTAATATTATAGGGTGCTGGTGATGCTGCTGCTGCTACAGGTGGCCATTA
TCGGAGCACAAAACAGCCACCTTAATAGTCGCGCTGAACAACTTATGGAG
GCGAACGAAAAACTCGCCGACGATGAAGGTCGCTGGTGTTCCCTCGCAAG
GGAGCTACAGGACCAAATGGACGTAATAAAGAAGGTGAAGATATTTTATA
CCAGTATATTTTATATTTTATATTTTCCAATTTACAATACTGTACAGTAT
CCATGTTACAAAATAACACGGTACGGTACCGTCCGGCACGAGGTCACGTG
TTCTAAAGTTAGAATTAGTCAGGCAAAGGTTAGCATGATTTTTGGTGTTC
GCTATCAATTCCCCTCCTCACGCTGTCAATACGGCAGGGAGAAACCTACA
CCCTTTTCCAGGACAAGGTTGACGAAGCAGAGGCAAGGCTAGAGGTGGCT
AAAGAAGCTGGCGACCTCAACAAGAAAAGGTGCAGCCCCAGCTAAACTGT
CCCACGCACCCGTATCTTCATGAGTAGCACCGCCCGTCCCCAGAAAGAGG
AGGATGACTAACAGTCAGTGATATTACCTTTGGAGTCACACTCGCGTTCA
TTTGACGGGAAGACACAGCGCACCAGGCATGTCATGGCATGGCTACACAT
TCTCGTCGTTACGTCAATTTCGCCCAAATGACCATCAGATGCAATAATAG
TCGACTCAGCCCCCCCAAATGTTCCATTGAATGATTTTAATTGTTAACGA
AACCAACCAAATGAAGTGTGACACACACGCCCCGCAGGTTGCACCAGATG
TACGGTATCGTAAGCGATTACTTCGAGGCCAGCATTTCAGACGCTGCCGT
TGATGAGAATCGTCTACACGCAACTATTCTTGAGCAACTCCGAGACCTCC
AGTTGTTGGTGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig80838:1205..2768+

>mRNA_H-elongata_contig80838.15742.1 ID=mRNA_H-elongata_contig80838.15742.1|Name=mRNA_H-elongata_contig80838.15742.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig80838:1205..2768+ (Himanthalia elongata Himel1 dioecious)
ATGATGATGGAGATCATGGACAAGTACGTTCAAGCAAGCGAGGCTTTGGC
TGAGAAGGAGAACGATGTAAGGCAGCTTAAGAAGCAGATGATGATGGAGA
TCATGGACAAGTACGTTCAAGCAAGCGAGGCTTTGGCTGAGAAGGAGAAC
GATGTAAGGCAGCTTAAGAAGCAGGTGGCCATTATCGGAGCACAAAACAG
CCACCTTAATAGTCGCGCTGAACAACTTATGGAGGCGAACGAAAAACTCG
CCGACGATGAAGGTCGCTGGTGTTCCCTCGCAAGGGAGCTACAGGACCAA
ATGGACGTAATAAAGAAGGTGGCCATTATCGGAGCACAAAACAGCCACCT
TAATAGTCGCGCTGAACAACTTATGGAGGCGAACGAAAAACTCGCCGACG
ATGAAGGTCGCTGGTGTTCCCTCGCAAGGGAGCTACAGGACCAAATGGAC
GTAATAAAGAAGGGAGAAACCTACACCCTTTTCCAGGACAAGGTTGACGA
AGCAGAGGCAAGGCTAGAGGTGGCTAAAGAAGCTGGCGACCTCAACAAGA
AAAGGGAGAAACCTACACCCTTTTCCAGGACAAGGTTGACGAAGCAGAGG
CAAGGCTAGAGGTGGCTAAAGAAGCTGGCGACCTCAACAAGAAAAGGTTG
CACCAGATGTACGGTATCGTAAGCGATTACTTCGAGGCCAGCATTTCAGA
CGCTGCCGTTGATGAGAATCGTCTACACGCAACTATTCTTGAGCAACTCC
GAGACCTCCAGTTGTTGGTGAAGGTTGCACCAGATGTACGGTATCGTAAG
CGATTACTTCGAGGCCAGCATTTCAGACGCTGCCGTTGATGAGAATCGTC
TACACGCAACTATTCTTGAGCAACTCCGAGACCTCCAGTTGTTGGTGAAG
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