mRNA_H-elongata_contig80822.15740.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80822.15740.1
Unique NamemRNA_H-elongata_contig80822.15740.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80822.15740.1 vs. uniprot
Match: D8LSU5_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSU5_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 4.370e-44
Identity = 73/120 (60.83%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:    1 EVEVELELVPVVSCRLPRGDGFTLGGAGGVWELVYSDVQPFRVSPFFMAFGELFGQEKERAETAFALHRAATANGEIGRVRQIISEATLISEVDLKVGFVPGLPIELKGTVVTKARLNRI 360
            E +  ++L+  +    P  D   +   GG WELVY+D QPFR SPFFMA GE+FG++K +AET F+LHRAAT+NGEIGRVRQ ISE+ L+SE+DLKVG +PGLP+ LKGTVVTKARLN +
Sbjct:   58 EKDAAMDLIFQLESLNPTPDATNVNTIGGAWELVYTDTQPFRCSPFFMALGEVFGEKKGQAETLFSLHRAATSNGEIGRVRQTISESMLVSEIDLKVGLLPGLPMALKGTVVTKARLNPV 177
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BLAST of mRNA_H-elongata_contig80822.15740.1 vs. uniprot
Match: A0A836CGB3_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB3_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.010e-36
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:   82 GGVWELVYSDVQPFRVSPFFMAFGELFGQEKERAETAFALHRAATANGEIGRVRQIISEATLISEVDLKVGFVPGLPIELKGTVVTKARLN 354
            GG WEL++SDVQPFR SPFFMA GELF  ++ R ETAFALHRAATANGEIGRVRQ+IS + L SEVDL+VG + G+P  L GTVV++A++ 
Sbjct:   57 GGTWELIFSDVQPFRSSPFFMAVGELFQDDRSRGETAFALHRAATANGEIGRVRQMISGSELTSEVDLRVGLLSGVPFSLSGTVVSRAKVR 147
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BLAST of mRNA_H-elongata_contig80822.15740.1 vs. uniprot
Match: A0A6V1MSR7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MSR7_HETAK)

HSP 1 Score: 112 bits (281), Expect = 6.120e-28
Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:   85 GVWELVYSDVQPFRVSPFFMAFGELFGQEKERAETAFALHRAATANGEIGRVRQIISEATLISEVDLKVGFVPGLPIELKGTVVTKARLN 354
            G WELVYSDV+ FR SPFFMA  +LFG + E+A  AF+LHR AT+  EIG+V+QI+  +TL+SEVDLKVG +P LP  + GTVV+ A + 
Sbjct:  128 GTWELVYSDVELFRSSPFFMAVRDLFGDDDEKASQAFSLHRLATSTSEIGKVKQILGPSTLVSEVDLKVGTIPSLPFAITGTVVSDAEVT 217
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BLAST of mRNA_H-elongata_contig80822.15740.1 vs. uniprot
Match: A0A7S1ZVU8_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZVU8_TRICV)

HSP 1 Score: 99.0 bits (245), Expect = 3.310e-23
Identity = 54/122 (44.26%), Postives = 74/122 (60.66%), Query Frame = 1 
Query:    1 EVEVELELVPVVSCRLPRGDGFTLGGAGGVWELVYSDVQPFRVSPFFMAFGELFGQE-KERAETAFALHRAATANGEIGRVRQIISEATLISEVDLKVGFVPGLPIELKGTVVTKARLNRIR 363
            E ++ ++LV  +    P  D        G W+L  ++VQ FR SPFF++   + G E K  AE  F LH  AT+   IGRVRQI+SE+ LISEVDL+VG  PGLP  ++GTV+T A L  ++
Sbjct:   98 ERDIVVDLVTQLEALNPTPDPAL--SCSGQWDLCLTNVQAFRSSPFFLSLRSIAGTEYKSVAENGFELHNRATSVSRIGRVRQIVSESELISEVDLEVGLAPGLPFRVRGTVITDAELRTVK 217
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BLAST of mRNA_H-elongata_contig80822.15740.1 vs. uniprot
Match: A0A0G4EBL4_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EBL4_VITBC)

HSP 1 Score: 97.1 bits (240), Expect = 9.140e-22
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 1 
Query:    1 EVEVELELVPVVSCRLPRGDGFTLGGAG--GVWELVYSDVQPFRVSPFFMAFGELFGQEKE--RAETAFALHRAATANGEIGRVRQIISEATLISEVDLKVGFVPGLPIELKGTVVTKARLNRIR 363
            E E+  ++   ++     G+G   G A   G WEL+Y DVQ FR SPF+M    LFG      +AE+ F LHR  T   EIGRVRQ +++  ++SEVDL VG +PGLP+ +KGTVV+ A +  ++
Sbjct:  116 EKEMVNDICSSLAAMAADGNGKEGGDANIDGTWELLYGDVQLFRQSPFWMTLRRLFGSATALPQAESLFDLHRLQTRVSEIGRVRQKVADGKMVSEVDLAVGLLPGLPMAVKGTVVSSADVRPVK 240
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BLAST of mRNA_H-elongata_contig80822.15740.1 vs. uniprot
Match: A0A4D9CQT7_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQT7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.000e-21
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   85 GVWELVYSDVQPFRVSPFFMAFGELFGQEKERAETAFALHRAATANGEIGRVRQIISEATLISEVDLKVGFVPGLPIELKGTVVTKARLNR 357
            GVWELVYSDV PFR SPFFM  G++       AE  F LHR AT   EIG+VRQII+   L+SEV++  G +P +P  + GTVVT+A  +R
Sbjct:  132 GVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATRGSEIGKVRQIITSQELVSEVEILTG-IPSIPFAISGTVVTRASASR 221
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BLAST of mRNA_H-elongata_contig80822.15740.1 vs. uniprot
Match: A0A7R9WND8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WND8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.390e-21
Identity = 56/119 (47.06%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:    1 EVEVELELVPVVSCRLPRGDGFTLGGAGGVWELVYSDVQPFRVSPFFMAFGELFGQE-KERAETAFALHRAATANGEIGRVRQIISEATLISEVDLKVGFVPGLPIELKGTVVTKARLN 354
            E ++ ++LV  +    P  +      A G W+L  S  Q FR SPFF A     G   K  AE  F LH  ATA G +GRVRQII++ T+ISEVDL+VG +PGLPI   GTVVT A L+
Sbjct:  127 ERDIVVDLVTQLEALNPTAE--PASNANGEWDLCISSTQFFRSSPFFQAIRVAAGDNNKAYAENFFDLHDRATAAGRVGRVRQIITQDTMISEVDLEVGVLPGLPIRFDGTVVTDAELS 243
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BLAST of mRNA_H-elongata_contig80822.15740.1 vs. uniprot
Match: A0A8J6CJG5_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CJG5_DIALT)

HSP 1 Score: 94.4 bits (233), Expect = 4.220e-21
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:   55 GDGFTLGGAGGVWELVYSDVQPFRVSPFFMAFGELFGQEKE-RAETAFALHRAATANGEIGRVRQIISEATLISEVDLKVGFVPGLPIELKGTVVTKARLNR 357
            G G       G WELV+SDV PFR SPFFMA G++    +   AE     HR AT+ GEIG+V   ++ A+L+SEV+L+VG +PG+P +L G VVT+A L R
Sbjct:   67 GAGRVPWAPSGTWELVFSDVAPFRASPFFMALGKVLDDFRPGAAERNLLAHRLATSVGEIGKVTWSMTPASLVSEVELRVGLLPGVPAQLTGRVVTQASLAR 168
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BLAST of mRNA_H-elongata_contig80822.15740.1 vs. uniprot
Match: A0A7S2Q3I4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q3I4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 8.190e-21
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 1 
Query:    1 EVEVELELVPVVSCRLPRGDGFTLGGAGGVWELVYSDVQPFRVSPFFMAFGELFGQE-KERAETAFALHRAATANGEIGRVRQIISEAT--LISEVDLKVGFVPGLPIELKGTVVTKARLNRIR 363
            E  + ++LV  +    P  D        G WEL YS  Q FR SPFF+A     G + K+ AE+AF +H AAT    +G+VRQII +    L+SE ++ VG +PGLP+++KGTV+T A ++ IR
Sbjct:   87 ESNLVVDLVTQLEALNPTAD--PAANCQGDWELCYSSTQSFRSSPFFLAIRSFLGDDNKQIAESAFDIHDAATTASRVGKVRQIIDKNNNELVSEYEVSVGLLPGLPVQVKGTVITSAEMSVIR 208
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BLAST of mRNA_H-elongata_contig80822.15740.1 vs. uniprot
Match: A0A7R9Z4E9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z4E9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.280e-20
Identity = 49/119 (41.18%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:    1 EVEVELELVPVVSCRLPRGDGFTLGGAGGVWELVYSDVQPFRVSPFFMAFGELFGQE-KERAETAFALHRAATANGEIGRVRQIISEATLISEVDLKVGFVPGLPIELKGTVVTKARLN 354
            E ++ ++LV  +    P  D        G W+L  ++ Q FR SPFF+A     G + K+ A+  F LH  AT+   IGRVRQ + +  ++SEVDL+VG +PGLP+ +KGTVVT A L 
Sbjct:   17 EADIVVDLVTQLEALNPTADPALQ--CEGEWDLTLTNTQLFRSSPFFLAIRSALGDDNKQIADNGFELHNRATSVSRIGRVRQTVKDGEVVSEVDLEVGLLPGLPVRVKGTVVTTAGLK 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80822.15740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSU5_ECTSI4.370e-4460.83PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A836CGB3_9STRA4.010e-3668.13PAP_fibrillin domain-containing protein n=1 Tax=Tr... [more]
A0A6V1MSR7_HETAK6.120e-2858.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1ZVU8_TRICV3.310e-2344.26Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A0G4EBL4_VITBC9.140e-2243.20Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A4D9CQT7_9STRA1.000e-2153.85PAP_fibrillin domain-containing protein n=1 Tax=Na... [more]
A0A7R9WND8_9STRA3.390e-2147.06Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A8J6CJG5_DIALT4.220e-2149.02Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S2Q3I4_9STRA8.190e-2141.94Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7R9Z4E9_9STRA2.280e-2041.18Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80822contigH-elongata_contig80822:780..2790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue1.6e-34
Seed eggNOG ortholog2880.D8LSU5
EggNOG free text desc.PAP_fibrillin
EggNOG OGs2CY64@1,2S2BE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-26_001470.1
Exons2
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931214.6816597-CDS-H-elongata_contig80822:779..8781622931214.6816597-CDS-H-elongata_contig80822:779..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80822 780..878 -
1691679744.7832546-CDS-H-elongata_contig80822:779..8781691679744.7832546-CDS-H-elongata_contig80822:779..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80822 780..878 -
1622931214.6941605-CDS-H-elongata_contig80822:2523..27901622931214.6941605-CDS-H-elongata_contig80822:2523..2790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80822 2524..2790 -
1691679744.7974377-CDS-H-elongata_contig80822:2523..27901691679744.7974377-CDS-H-elongata_contig80822:2523..2790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80822 2524..2790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80822.15740.1prot_H-elongata_contig80822.15740.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80822 780..2790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80822.15740.1

>prot_H-elongata_contig80822.15740.1 ID=prot_H-elongata_contig80822.15740.1|Name=mRNA_H-elongata_contig80822.15740.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
EVEVELELVPVVSCRLPRGDGFTLGGAGGVWELVYSDVQPFRVSPFFMAF
GELFGQEKERAETAFALHRAATANGEIGRVRQIISEATLISEVDLKVGFV
PGLPIELKGTVVTKARLNRIR*
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mRNA from alignment at H-elongata_contig80822:780..2790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80822.15740.1 ID=mRNA_H-elongata_contig80822.15740.1|Name=mRNA_H-elongata_contig80822.15740.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2011bp|location=Sequence derived from alignment at H-elongata_contig80822:780..2790- (Himanthalia elongata Himel1 dioecious)
GAAGTTGAAGTTGAACTTGAGCTTGTCCCCGTGGTGTCATGCCGTCTCCC
TCGCGGCGATGGCTTCACGCTTGGCGGTGCAGGGGGCGTTTGGGAACTGG
TGTACTCGGACGTCCAACCCTTCCGCGTCTCGCCGTTTTTCATGGCGTTC
GGAGAGTTGTTCGGGCAGGAGAAAGAACGCGCCGAAACCGCGTTCGCGCT
GCACCGAGCGGCGACAGCCAACGGGGAGATCGGCAGGGTTCGCCAGATCA
TAAGCGAGGCAACGTTGGTGGGGATCTCTGTGTGTGTGTGTGGGTGTGGG
TGTATTTATTAAATCGTACATAACCGCGCAATCCGGCAATCCGGCTCTGT
CATGCGACCACGAATCATTCTAAACTACTCACATTGGTCCTCCCAATGGG
AGATGGATTTTTATTCATAGGGAACATAACTCTAGAAACCATACTTGACG
AGCGAGGTTTTAAACCACCCTCACCCCTTGTCGTTTAGCGCCCTCACCCG
ATTGACTGCTGAGGTCTGCTGGGGCGCGTGAAAAATCGTGACGAGGGTAG
GTCGAGGACATCTAACAATGGAGAATTTCTGACCGGGTTGCGCGAAGCAT
GTCATACAGGCCTTGCTGTAGCCGAGGGTTCTTGGCTTTGTCCGCACACG
TATCTCGATATATCGCGATTGTCTATTTAATAGCTGCTTAGTATTTGATA
GATCAAATCAGTCAACACGAACACGCACAACATGGTCGAAGCGACTCCTC
CTACTGCTTGCGGGGTCACCCTTTAGCACCCTTTGGGTATGCCACGTCAC
ATCGCGATATTAAGATAACCGGCAACAGTCTAGAATACTAAGACAACCGC
GTACGGAGTTCGTTCAGTGATTTATTCGCCCTTGTCGTCGCCATCTCCTT
CTTCCGTCCCTCGCGAAATCGATAACATCAGTCCTTTTACCTCGTCGCCC
TTGCCGTAGCCGCGTTGTGCTATTGCCATAACCTCGGGTACCCGGAGCAT
GCTTTTACTAATAACTTGTCGGAGAACGGGAGTAAGCAAAGGTCAACCAT
TAATTGGTGGTTCACGAGGTGTAAAAGAGAAATAAGGCTGAACTTGCATC
GATCGAGATTTTTAAAAACAAAAAATCGTAGGGAGGCGTTGATTAACCGG
GGAGGGAGAGATGGGTTGATTGATCTCTTATTAGGGCCACAACAGGTGAG
ATGGCAACATTTGCTGTAGCACGTGGGATTGGTAACCTAGCCACGTTTGA
AAGGTATACAGTATCCCATCGACAGAAAGTAGGGATCAAATAATTATAGA
TCCATTTCCCCTTGGGCGCCGAATTGACCCTCCCCCCCTTTTTTTCGTGA
ACGCATCCGCCCAGCTTGGAAACCCCACACACTCTTGAAAGACACCGATT
CTAGCTGTCACGAGCAAACCCCGAAAGCGGTCTGCGAGGGGAATTGCGGT
AGCTTTAGTTTAAGCTCTACGCAGGGCAGCATGCATTGTTTGGGACTTCA
GGCGTCTCTTACGTCGATTGCGTCGTCTTCTTAGAAGGGTATAGCTTGCT
AACCACAACCACAACTAGAATCGCTCCCGGTGTGCGTACCATGCCGGGCA
CCGCTGCACGAGTTCGAGGGCATCTCCTCAAGGCATCGTAGACTCACATT
TACCCTGAAATTGCTCCGTCTCGCGACGCTCACGCTACCCAGCGTCGGCG
TTGAGCTGGGCTGTTGTGTCCCATTCGAGCCTGCCGGTAGCAGTTGCGAG
TGTCACGCGAACGAGATGATCGCTACCGATTCTTGCGGTCGTGTTTTATC
AATTGTGCGGTAACACGCTATTCGGGAGTTCTAACCCCTAAAGAACGCAA
CGGATGTTCTTTAACGTGCTGGCGGATCTACGAACTCTTCCGCATCGGTC
TGGGCTGTACAGATATCCGAGGTGGATCTTAAGGTGGGGTTTGTGCCGGG
CTTACCGATAGAGCTAAAGGGCACCGTGGTCACCAAGGCGAGGCTCAACC
GCATAAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig80822:780..2790-

>mRNA_H-elongata_contig80822.15740.1 ID=mRNA_H-elongata_contig80822.15740.1|Name=mRNA_H-elongata_contig80822.15740.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig80822:780..2790- (Himanthalia elongata Himel1 dioecious)
GAAGTTGAAGTTGAACTTGAGCTTGTCCCCGTGGTGTCATGCCGTCTCCC
TCGCGGCGATGGCTTCACGCTTGGCGGTGCAGGGGGCGTTTGGGAACTGG
TGTACTCGGACGTCCAACCCTTCCGCGTCTCGCCGTTTTTCATGGCGTTC
GGAGAGTTGTTCGGGCAGGAGAAAGAACGCGCCGAAACCGCGTTCGCGCT
GCACCGAGCGGCGACAGCCAACGGGGAGATCGGCAGGGTTCGCCAGATCA
TAAGCGAGGCAACGTTGGAAGTTGAAGTTGAACTTGAGCTTGTCCCCGTG
GTGTCATGCCGTCTCCCTCGCGGCGATGGCTTCACGCTTGGCGGTGCAGG
GGGCGTTTGGGAACTGGTGTACTCGGACGTCCAACCCTTCCGCGTCTCGC
CGTTTTTCATGGCGTTCGGAGAGTTGTTCGGGCAGGAGAAAGAACGCGCC
GAAACCGCGTTCGCGCTGCACCGAGCGGCGACAGCCAACGGGGAGATCGG
CAGGGTTCGCCAGATCATAAGCGAGGCAACGTTGATATCCGAGGTGGATC
TTAAGGTGGGGTTTGTGCCGGGCTTACCGATAGAGCTAAAGGGCACCGTG
GTCACCAAGGCGAGGCTCAACCGCATAAGGTGAATATCCGAGGTGGATCT
TAAGGTGGGGTTTGTGCCGGGCTTACCGATAGAGCTAAAGGGCACCGTGG
TCACCAAGGCGAGGCTCAACCGCATAAGGTGA
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