mRNA_H-elongata_contig80673.15716.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig80673.15716.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI) HSP 1 Score: 189 bits (481), Expect = 1.510e-53 Identity = 93/113 (82.30%), Postives = 102/113 (90.27%), Query Frame = 1
Query: 13 ESSVMVEGHLAYAPQEPWIQSGTVRENILFGKPMDRKRYDSVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQADTYVMDDPMSAVDPAVGRELFSNVI 351
E V V G LAYA QEPWIQSGT+RENILFG+ MD+KRYD+VI DC+LERDLS+LPSGD TGIGDRGVNLSGGQKARVGLARMAYA ADTY+MDDP+SAVDPAVGRELFS V+
Sbjct: 642 ELGVSVLGSLAYASQEPWIQSGTLRENILFGRAMDQKRYDAVIRDCALERDLSLLPSGDQTGIGDRGVNLSGGQKARVGLARMAYAHADTYLMDDPLSAVDPAVGRELFSKVV 754
BLAST of mRNA_H-elongata_contig80673.15716.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE) HSP 1 Score: 189 bits (481), Expect = 1.520e-53 Identity = 93/113 (82.30%), Postives = 102/113 (90.27%), Query Frame = 1
Query: 13 ESSVMVEGHLAYAPQEPWIQSGTVRENILFGKPMDRKRYDSVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQADTYVMDDPMSAVDPAVGRELFSNVI 351
E V V G LAYA QEPWIQSGT+RENILFG+ MD+KRYD+VI DC+LERDLS+LPSGD TGIGDRGVNLSGGQKARVGLARMAYA ADTY+MDDP+SAVDPAVGRELFS V+
Sbjct: 457 ELGVSVLGSLAYASQEPWIQSGTLRENILFGRAMDQKRYDAVIRDCALERDLSLLPSGDQTGIGDRGVNLSGGQKARVGLARMAYAHADTYLMDDPLSAVDPAVGRELFSKVV 569
BLAST of mRNA_H-elongata_contig80673.15716.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.820e-52 Identity = 90/110 (81.82%), Postives = 99/110 (90.00%), Query Frame = 1
Query: 22 VMVEGHLAYAPQEPWIQSGTVRENILFGKPMDRKRYDSVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQADTYVMDDPMSAVDPAVGRELFSNVI 351
V V G LAY QEPWIQS T+RENILFG+ MD+KRYD+VI DC+LERDLS+LPSGD TGIGDRGVNLSGGQKARVGLARMAYA ADTY+MDDP+SAVDPAVGRELFS V+
Sbjct: 476 VSVSGSLAYTSQEPWIQSSTIRENILFGRAMDQKRYDAVIRDCALERDLSLLPSGDQTGIGDRGVNLSGGQKARVGLARMAYAHADTYLMDDPLSAVDPAVGRELFSKVV 585
BLAST of mRNA_H-elongata_contig80673.15716.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI) HSP 1 Score: 177 bits (448), Expect = 4.240e-49 Identity = 83/99 (83.84%), Postives = 94/99 (94.95%), Query Frame = 1
Query: 55 QEPWIQSGTVRENILFGKPMDRKRYDSVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQADTYVMDDPMSAVDPAVGRELFSNVI 351
+EPWIQSGT+RENILFG+ MD+KRYD+VI DC+LERDLS+LPSGD TGIGD+GVNLSGGQKARVGLARMAYA ADTY+MDDP+SAVDPAVGRELFS V+
Sbjct: 519 EEPWIQSGTIRENILFGRAMDQKRYDAVIRDCALERDLSLLPSGDQTGIGDKGVNLSGGQKARVGLARMAYAHADTYLMDDPLSAVDPAVGRELFSKVV 617
BLAST of mRNA_H-elongata_contig80673.15716.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE) HSP 1 Score: 171 bits (433), Expect = 4.440e-47 Identity = 81/99 (81.82%), Postives = 91/99 (91.92%), Query Frame = 1
Query: 55 QEPWIQSGTVRENILFGKPMDRKRYDSVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQADTYVMDDPMSAVDPAVGRELFSNVI 351
+EPWIQS T+RENILFG M+RKRYD+VI DC+LERDLS LPSGD TGIGD+GVNLSGGQKARVGLARMAYA ADTY+MDDP+SAVDPAVGR+LFS V+
Sbjct: 440 EEPWIQSSTIRENILFGSAMNRKRYDAVIRDCALERDLSFLPSGDQTGIGDKGVNLSGGQKARVGLARMAYAHADTYLMDDPLSAVDPAVGRKLFSQVV 538
BLAST of mRNA_H-elongata_contig80673.15716.1 vs. uniprot
Match: A0A0B7AKI9_9EUPU (ABC transporter domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7AKI9_9EUPU) HSP 1 Score: 147 bits (371), Expect = 4.110e-42 Identity = 67/117 (57.26%), Postives = 89/117 (76.07%), Query Frame = 1
Query: 1 LQKHESSVMVEGHLAYAPQEPWIQSGTVRENILFGKPMDRKRYDSVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQADTYVMDDPMSAVDPAVGRELFSNVI 351
++K S ++ +LAY PQ+ WIQ+ TV++NILFGKP + KRY V+ C+LERDL IL +GDLT IG++G+NLSGGQK RV LAR Y+ AD Y+ DDP+SAVD VG+ +F+NVI
Sbjct: 87 MEKRSGSACIKSNLAYVPQQAWIQNATVKDNILFGKPFNSKRYKKVLFACALERDLEILSAGDLTEIGEKGINLSGGQKQRVSLARAVYSNADIYIFDDPLSAVDTHVGKHIFNNVI 203
BLAST of mRNA_H-elongata_contig80673.15716.1 vs. uniprot
Match: A0A653CZ53_CALMS (Cystic fibrosis transmembrane conductance regulator n=3 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653CZ53_CALMS) HSP 1 Score: 150 bits (380), Expect = 6.160e-40 Identity = 70/113 (61.95%), Postives = 89/113 (78.76%), Query Frame = 1
Query: 13 ESSVMVEGHLAYAPQEPWIQSGTVRENILFGKPMDRKRYDSVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQADTYVMDDPMSAVDPAVGRELFSNVI 351
E S+ V G ++YA QEPW+ +GTVR+NILFG PMD+ RY +V+ CSLERD ++LP GD T +GDRGV+LSGGQ+AR+ LAR Y +AD Y++DDP+SAVD VGRELF N I
Sbjct: 492 EGSLKVSGRISYASQEPWLFAGTVRQNILFGLPMDKTRYKTVVQKCSLERDFNLLPYGDKTIVGDRGVSLSGGQRARINLARAVYKEADIYLLDDPLSAVDTHVGRELFENCI 604
BLAST of mRNA_H-elongata_contig80673.15716.1 vs. uniprot
Match: UPI000359DF33 (multidrug resistance-associated protein 1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359DF33) HSP 1 Score: 150 bits (378), Expect = 1.150e-39 Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 1
Query: 1 LQKHESSVMVEGHLAYAPQEPWIQSGTVRENILFGKPMDRKRYDSVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQADTYVMDDPMSAVDPAVGRELFSNVI 351
L K E SV V G LAY PQ+ WIQ+ TVR NILFG+PMD+ YD + C+L DL ILP+GDLT IG+RG+NLSGGQK RV LAR Y+QAD Y++DDP+SAVD VGR +F +V+
Sbjct: 704 LDKTEGSVNVRGTLAYVPQQAWIQNDTVRNNILFGRPMDKALYDRCVEACALTPDLDILPAGDLTEIGERGINLSGGQKQRVSLARAVYSQADVYLLDDPLSAVDSHVGRHIFDHVM 820
BLAST of mRNA_H-elongata_contig80673.15716.1 vs. uniprot
Match: A0A2H2JGU0_CAEJA (Uncharacterized protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2JGU0_CAEJA) HSP 1 Score: 147 bits (370), Expect = 1.280e-39 Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 1
Query: 28 VEGHLAYAPQEPWIQSGTVRENILFGKPMDRKRYDSVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQADTYVMDDPMSAVDPAVGRELFSNVI 351
V G +AY PQ+PWIQ+ T+R+NI FG+P DRKRYD V+H C+L+ D+ ILP+GD T IG++G+NLSGGQKARV LAR Y D Y++DDP+SAVD VGR +F VI
Sbjct: 16 VNGRVAYVPQQPWIQNMTLRDNITFGRPFDRKRYDQVLHACALKADIKILPAGDRTEIGEKGINLSGGQKARVSLARAVYQNLDVYLLDDPLSAVDAHVGRHIFEKVI 123
BLAST of mRNA_H-elongata_contig80673.15716.1 vs. uniprot
Match: A0A835YMC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC7_9STRA) HSP 1 Score: 149 bits (375), Expect = 2.940e-39 Identity = 67/104 (64.42%), Postives = 87/104 (83.65%), Query Frame = 1
Query: 40 LAYAPQEPWIQSGTVRENILFGKPMDRKRYDSVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQADTYVMDDPMSAVDPAVGRELFSNVI 351
+A+APQEPWIQ+ +R+N+LFG+ MDR +Y++V+ C L RDLS+LP GD+T IGDRGVNLSGGQ+ARVGLAR+AYA Y++DDP+SAVDP VGR LF +V+
Sbjct: 794 VAFAPQEPWIQNAPLRDNVLFGREMDRPKYEAVLDACELRRDLSMLPDGDMTLIGDRGVNLSGGQRARVGLARVAYADVPLYLLDDPLSAVDPKVGRHLFKHVV 897 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80673.15716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80673.15716.1 >prot_H-elongata_contig80673.15716.1 ID=prot_H-elongata_contig80673.15716.1|Name=mRNA_H-elongata_contig80673.15716.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp MVEGHLAYAPQEPWIQSGTVRENILFGKPMDRKRYDSVIHDCSLERDLSIback to top mRNA from alignment at H-elongata_contig80673:330..1750- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80673.15716.1 ID=mRNA_H-elongata_contig80673.15716.1|Name=mRNA_H-elongata_contig80673.15716.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1421bp|location=Sequence derived from alignment at H-elongata_contig80673:330..1750- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80673:330..1750- >mRNA_H-elongata_contig80673.15716.1 ID=mRNA_H-elongata_contig80673.15716.1|Name=mRNA_H-elongata_contig80673.15716.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig80673:330..1750- (Himanthalia elongata Himel1 dioecious)back to top |