mRNA_H-elongata_contig80592.15710.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80592.15710.1
Unique NamemRNA_H-elongata_contig80592.15710.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80592.15710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80592contigH-elongata_contig80592:1340..1910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size452
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931211.3565369-CDS-H-elongata_contig80592:1339..16081622931211.3565369-CDS-H-elongata_contig80592:1339..1608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80592 1340..1608 +
1691679743.3783736-CDS-H-elongata_contig80592:1339..16081691679743.3783736-CDS-H-elongata_contig80592:1339..1608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80592 1340..1608 +
1622931211.3732078-CDS-H-elongata_contig80592:1728..19091622931211.3732078-CDS-H-elongata_contig80592:1728..1909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80592 1729..1909 +
1691679743.3890836-CDS-H-elongata_contig80592:1728..19091691679743.3890836-CDS-H-elongata_contig80592:1728..1909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80592 1729..1909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80592.15710.1prot_H-elongata_contig80592.15710.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80592 1340..1909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80592.15710.1

>prot_H-elongata_contig80592.15710.1 ID=prot_H-elongata_contig80592.15710.1|Name=mRNA_H-elongata_contig80592.15710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
RHRQKRVTHSEEHNPLFSKHCDTIAWGGRTSPKPPQIYVLIRKLAKMEQC
PSRHVPVQRVRRRGSEHQYQEPQLQYETTLEVVDNRHMTRTSAATVTSSF
DAAAAAAGLDNPTVGTVSHEEKKIDGVPRAVNARSVRNRRLVLEEAAGVR
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mRNA from alignment at H-elongata_contig80592:1340..1910+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80592.15710.1 ID=mRNA_H-elongata_contig80592.15710.1|Name=mRNA_H-elongata_contig80592.15710.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=571bp|location=Sequence derived from alignment at H-elongata_contig80592:1340..1910+ (Himanthalia elongata Himel1 dioecious)
CGACATCGACAAAAGCGCGTTACACATTCTGAAGAACATAACCCCCTTTT
CTCCAAACACTGCGATACCATCGCTTGGGGTGGTCGAACTTCTCCGAAAC
CTCCACAGATCTATGTTTTGATCCGGAAACTAGCAAAGATGGAACAGTGT
CCCTCTCGCCACGTTCCTGTACAGAGAGTCCGTCGACGAGGAAGCGAACA
TCAATACCAGGAGCCGCAGTTGCAGTACGAGACGACTCTGGAAGTTGTTG
ACAACAGGCATATGACGCGGCGGCGACGGTTGAGGGTGCCGGTTGCACAA
TGGCGCCTACCGGCCTCGTCCGTTGTAAAAGCGTTTGCTACAAGAGTGGT
CGTGGTACTAGCCTTGGCTGCTTGTTTCAGACCGCTCTACACTTCTGCTG
CGACTGTCACTTCTTCCTTTGATGCTGCTGCTGCTGCTGCGGGCCTGGAC
AACCCCACTGTGGGGACTGTATCACACGAAGAAAAAAAGATCGACGGTGT
ACCTCGTGCTGTGAATGCAAGGAGCGTTCGCAATCGAAGGCTGGTGCTGG
AGGAGGCCGCCGGCGTCCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig80592:1340..1910+

>mRNA_H-elongata_contig80592.15710.1 ID=mRNA_H-elongata_contig80592.15710.1|Name=mRNA_H-elongata_contig80592.15710.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig80592:1340..1910+ (Himanthalia elongata Himel1 dioecious)
CGACATCGACAAAAGCGCGTTACACATTCTGAAGAACATAACCCCCTTTT
CTCCAAACACTGCGATACCATCGCTTGGGGTGGTCGAACTTCTCCGAAAC
CTCCACAGATCTATGTTTTGATCCGGAAACTAGCAAAGATGGAACAGTGT
CCCTCTCGCCACGTTCCTGTACAGAGAGTCCGTCGACGAGGAAGCGAACA
TCAATACCAGGAGCCGCAGTTGCAGTACGAGACGACTCTGGAAGTTGTTG
ACAACAGGCATATGACGCGCGACATCGACAAAAGCGCGTTACACATTCTG
AAGAACATAACCCCCTTTTCTCCAAACACTGCGATACCATCGCTTGGGGT
GGTCGAACTTCTCCGAAACCTCCACAGATCTATGTTTTGATCCGGAAACT
AGCAAAGATGGAACAGTGTCCCTCTCGCCACGTTCCTGTACAGAGAGTCC
GTCGACGAGGAAGCGAACATCAATACCAGGAGCCGCAGTTGCAGTACGAG
ACGACTCTGGAAGTTGTTGACAACAGGCATATGACGCGCACTTCTGCTGC
GACTGTCACTTCTTCCTTTGATGCTGCTGCTGCTGCTGCGGGCCTGGACA
ACCCCACTGTGGGGACTGTATCACACGAAGAAAAAAAGATCGACGGTGTA
CCTCGTGCTGTGAATGCAAGGAGCGTTCGCAATCGAAGGCTGGTGCTGGA
GGAGGCCGCCGGCGTCCGACACTTCTGCTGCGACTGTCACTTCTTCCTTT
GATGCTGCTGCTGCTGCTGCGGGCCTGGACAACCCCACTGTGGGGACTGT
ATCACACGAAGAAAAAAAGATCGACGGTGTACCTCGTGCTGTGAATGCAA
GGAGCGTTCGCAATCGAAGGCTGGTGCTGGAGGAGGCCGCCGGCGTCCGA
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