mRNA_H-elongata_contig120383.1571.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120383.1571.1
Unique NamemRNA_H-elongata_contig120383.1571.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig120383.1571.1 vs. uniprot
Match: D8LM77_ECTSI (Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM77_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 1.780e-87
Identity = 143/182 (78.57%), Postives = 159/182 (87.36%), Query Frame = 2 
Query:  158 SRAIVQLEQDGTNPYPHKFLATTSIPDFVSKFQNIEDGQKQEDIVSIAGRIAAKREQGKLLFYTIKADGANVQIMASLGDYEGGEEEFWKTNGLLRRGDLIGVTGYAGKSKKGELSVFPTSMQLLAPCLHMLPNLKGGLMNQETRYRQRYLDLMTNDETRRVFQVRSVS---IACFLD-RGF 691
            SRAI QLE++GTNPYPHKF  T SIP+FV+KF+++E G+KQED+VS+AGRI  KREQGKLLFY +KADGA+VQ+MASL DYEGGEE FWKTNGLLRRGDLIGVTGY GKSKKGELSVFPT+M LL+PCLHMLPN + GL NQETRYRQRYLDLMTNDETRRVFQVRS     I  FLD RGF
Sbjct:   69 SRAIAQLEEEGTNPYPHKFHVTISIPEFVAKFKDVEVGEKQEDVVSLAGRIVKKREQGKLLFYGMKADGASVQVMASLSDYEGGEEAFWKTNGLLRRGDLIGVTGYPGKSKKGELSVFPTTMVLLSPCLHMLPNSREGLKNQETRYRQRYLDLMTNDETRRVFQVRSKVVNYIRSFLDERGF 250
[Close]
BLAST of mRNA_H-elongata_contig120383.1571.1 vs. uniprot
Match: A0A835Z3J2_9STRA (Lysine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J2_9STRA)

HSP 1 Score: 217 bits (552), Expect = 5.300e-62
Identity = 111/181 (61.33%), Postives = 133/181 (73.48%), Query Frame = 2 
Query:  161 RAIVQLEQDGTNPYPHKFLATTSIPDFVSKFQNIEDGQKQEDIVSIAGRIAAKREQGKLLFYTIKADGANVQIMASLGDYEGGEEEFWKTNGLLRRGDLIGVTGYAGKSKKGELSVFPTSMQLLAPCLHMLPNLKGGLMNQETRYRQRYLDLMTNDETRRVFQVRSV---SIACFL-DRGF 691
            +AI  +E  G NPYPHKF  TTS+P FV+ + ++E G    D VS+AGRI  KR QGKL FY +  DGA+VQIM+SLGDYE  EE FW+ + LLRRGD++GVTG  GKSKKGELS+FPT + LL+PCLHMLP    GL NQE RYRQRYLDL+ ND+ RRVF+VRS     I  FL +RGF
Sbjct:   72 KAITAMETKGLNPYPHKFTTTTSLPAFVAAYSSMEAGAHGTDTVSLAGRIKTKRVQGKLYFYDMSGDGASVQIMSSLGDYES-EEAFWEVHDLLRRGDIVGVTGSPGKSKKGELSIFPTRITLLSPCLHMLPKGHSGLKNQEVRYRQRYLDLIMNDDVRRVFEVRSKVVDGIRTFLNERGF 251
[Close]
BLAST of mRNA_H-elongata_contig120383.1571.1 vs. uniprot
Match: W4G6B8_9STRA (Lysyl-tRNA synthetase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G6B8_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.500e-56
Identity = 98/181 (54.14%), Postives = 130/181 (71.82%), Query Frame = 2 
Query:  158 SRAIVQLEQDGTNPYPHKFLATTSIPDFVSKFQNIEDGQKQED-IVSIAGRIAAKREQG-KLLFYTIKADGANVQIMASLGDYEGGEEEFWKTNGLLRRGDLIGVTGYAGKSKKGELSVFPTSMQLLAPCLHMLPNLKGGLMNQETRYRQRYLDLMTNDETRRVFQVRSVSIACFLDRGFD 694
            ++ + +LE DG NPYPHKF  T S+P+FV  +  IE G   E  +VS+AGR+ +KR  G KL FY + ADGA++Q+M+ +  Y   E E+ + +  LRRGDL+GVTG+ GKSKKGELS+FPTS+ LL+PC+HMLP    GL NQ+TR+RQRYLDL+ NDETR+VF VRS  I  F+ +  D
Sbjct:   89 TKLLAELEADGVNPYPHKFHVTISVPEFVQTYHGIEAGSHVETTVVSVAGRLMSKRASGAKLHFYGLHADGASIQVMSQIDVYAD-EAEYARIHAALRRGDLVGVTGFPGKSKKGELSIFPTSLVLLSPCMHMLPKAHYGLSNQDTRFRQRYLDLILNDETRKVFTVRS-KIVNFIRKFLD 267
[Close]
BLAST of mRNA_H-elongata_contig120383.1571.1 vs. uniprot
Match: A0A485LHE4_9STRA (Lysine--tRNA ligase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHE4_9STRA)

HSP 1 Score: 199 bits (505), Expect = 3.060e-56
Identity = 96/181 (53.04%), Postives = 133/181 (73.48%), Query Frame = 2 
Query:  158 SRAIVQLEQDGTNPYPHKFLATTSIPDFVSKFQNIEDGQKQE-DIVSIAGRIAAKREQG-KLLFYTIKADGANVQIMASLGDYEGGEEEFWKTNGLLRRGDLIGVTGYAGKSKKGELSVFPTSMQLLAPCLHMLPNLKGGLMNQETRYRQRYLDLMTNDETRRVFQVRSVSIACFLDRGFD 694
            ++ + ++E DG NPYPHKF  + S+P+FV+K+ ++E G   E D+VS+AGR+ +KR  G KL FY + ADGAN+Q+M+ +  YE  E+E+ + +  LRRGDL+GVTG+ GKSKKGELS+FPT + LL+PC+HMLP    GL NQ+TR+RQRYLD++ NDETR VF  RS  I  F+ +  D
Sbjct:   84 TKLLAEMEADGVNPYPHKFHVSISVPEFVTKYHSVEAGSHLESDVVSVAGRLMSKRASGAKLYFYGLHADGANIQVMSQIDSYEN-EDEYHRIHAALRRGDLVGVTGFPGKSKKGELSIFPTRLVLLSPCMHMLPKAHYGLSNQDTRFRQRYLDMILNDETRNVFATRS-KIIKFIRKFLD 262
[Close]
BLAST of mRNA_H-elongata_contig120383.1571.1 vs. uniprot
Match: A0A8K1CEE6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEE6_PYTOL)

HSP 1 Score: 198 bits (504), Expect = 3.910e-56
Identity = 94/168 (55.95%), Postives = 131/168 (77.98%), Query Frame = 2 
Query:  161 RAIVQLEQDGTNPYPHKFLATTSIPDFVSKFQNIEDGQKQEDIV-SIAGRIAAKREQG-KLLFYTIKADGANVQIMASLGDYEGGEEEFWKTNGLLRRGDLIGVTGYAGKSKKGELSVFPTSMQLLAPCLHMLPNLKGGLMNQETRYRQRYLDLMTNDETRRVFQVRS 658
            + +V LE++G NPYPHKF  +TS+PDF +K+ ++E G++ +D+V S+AGR+ +KR  G KL+FY ++ADG  +Q+M+S  +YE  E+ F+K + +LRRGD++GV GY GKSKKGELS+FPT + LL+PC+HMLP    GL  Q+TRYRQRYLDL+ NDETR VFQ R+
Sbjct:   77 KMLVALEKEGINPYPHKFHVSTSLPDFHAKYSSVEAGKQLDDVVVSVAGRLHSKRASGAKLVFYDLRADGVKIQVMSSADNYES-EDAFFKIHSVLRRGDIVGVKGYPGKSKKGELSIFPTELVLLSPCMHMLPKAHYGLKLQDTRYRQRYLDLILNDETRNVFQTRA 243
[Close]
BLAST of mRNA_H-elongata_contig120383.1571.1 vs. uniprot
Match: A0A662XLI0_9STRA (Lysyl-tRNA synthetase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XLI0_9STRA)

HSP 1 Score: 188 bits (478), Expect = 8.170e-55
Identity = 96/181 (53.04%), Postives = 131/181 (72.38%), Query Frame = 2 
Query:  161 RAIVQLEQDGTNPYPHKFLATTSIPDFVSKFQNIEDGQKQEDIV-SIAGRIAAKREQG-KLLFYTIKADGANVQIMASLGDYEGGEEEFWKTNGLLRRGDLIGVTGYAGKSKKGELSVFPTSMQLLAPCLHMLPNLKGGL-MNQETRYRQRYLDLMTNDETRRVFQVRSVSIACFLDRGFD 694
            + +V+LEQ G NPYPHKF   TS+P+F +++  ++ G   +D+V S+AGRI +KR  G KL+FY ++ADG  +QIM+ +G YE  E  F K + +LRRGD++GVTG+ GKSKKGELS+FP  + LL+PC+HMLP    GL + Q+TRYRQRYLDL+ ND+TR VFQ R+  I  F+ R  D
Sbjct:   81 KMLVELEQQGVNPYPHKFHVDTSLPEFHAQYSALDAGNHLQDVVVSVAGRIHSKRASGAKLVFYDLRADGVKIQIMSDVGTYESAEA-FAKIHSILRRGDIVGVTGHPGKSKKGELSIFPQQLVLLSPCMHMLPKGHAGLTLQQDTRYRQRYLDLIMNDDTRGVFQTRA-KIINFIRRFLD 259
[Close]
BLAST of mRNA_H-elongata_contig120383.1571.1 vs. uniprot
Match: F0WNT8_9STRA (Lysine--tRNA ligase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WNT8_9STRA)

HSP 1 Score: 193 bits (490), Expect = 5.110e-54
Identity = 91/168 (54.17%), Postives = 128/168 (76.19%), Query Frame = 2 
Query:  161 RAIVQLEQDGTNPYPHKFLATTSIPDFVSKFQNIEDGQKQEDI-VSIAGRIAAKREQG-KLLFYTIKADGANVQIMASLGDYEGGEEEFWKTNGLLRRGDLIGVTGYAGKSKKGELSVFPTSMQLLAPCLHMLPNLKGGLMNQETRYRQRYLDLMTNDETRRVFQVRS 658
            + ++ +E +G NPYPHKF  +TS+P+F  +F N+E+G+  ED  +S+AGR+ +KR  G KLLFY ++ DGA +Q+M+SL  YE   E F+K + LLRRGD++G+ G+ GKSKKGELS+FP  + +L+PCLHMLP    GL  Q+TRYRQRYLDL+ NDETR+VF++R+
Sbjct:   92 KMLIDMENEGINPYPHKFHVSTSLPEFHEQFGNLENGRHLEDTSISVAGRLHSKRASGSKLLFYDLRGDGAKIQVMSSLEMYES-HESFYKIHHLLRRGDIVGIQGFPGKSKKGELSIFPRRITILSPCLHMLPKAHYGLKLQDTRYRQRYLDLILNDETRKVFEIRA 258
[Close]
BLAST of mRNA_H-elongata_contig120383.1571.1 vs. uniprot
Match: A0A6G0WLL8_9STRA (Lysine--tRNA ligase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLL8_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.950e-53
Identity = 94/181 (51.93%), Postives = 131/181 (72.38%), Query Frame = 2 
Query:  158 SRAIVQLEQDGTNPYPHKFLATTSIPDFVSKFQNIEDGQKQE-DIVSIAGRIAAKREQG-KLLFYTIKADGANVQIMASLGDYEGGEEEFWKTNGLLRRGDLIGVTGYAGKSKKGELSVFPTSMQLLAPCLHMLPNLKGGLMNQETRYRQRYLDLMTNDETRRVFQVRSVSIACFLDRGFD 694
            ++ + ++E DG NPYPHKF  + S+PDFV+K+  +E G   E DIVS+AGR+ +KR  G KL FY + ADG+++Q+M+ +  Y   EE + + +  LRRGDL+G+TG+ GKSKKGELS+FP  + LL+PC+HMLP    GL NQ+TR+RQRYLD++ NDETR+VF VRS  I  F+ +  D
Sbjct:   73 TKLLTEMEADGINPYPHKFQVSISVPDFVAKYHRLEAGSHLESDIVSVAGRLMSKRASGAKLHFYGLNADGSSIQVMSQIDAYTNAEE-YARIHAALRRGDLVGITGFPGKSKKGELSIFPQRIVLLSPCMHMLPKAHYGLSNQDTRFRQRYLDMILNDETRKVFTVRS-KIINFIRKFLD 251
[Close]
BLAST of mRNA_H-elongata_contig120383.1571.1 vs. uniprot
Match: K3X9C3_GLOUD (Lysine--tRNA ligase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X9C3_GLOUD)

HSP 1 Score: 191 bits (484), Expect = 2.920e-53
Identity = 97/180 (53.89%), Postives = 130/180 (72.22%), Query Frame = 2 
Query:  161 RAIVQLEQDGTNPYPHKFLATTSIPDFVSKFQNIEDGQKQE-DIVSIAGRIAAKREQG-KLLFYTIKADGANVQIMASLGDYEGGEEEFWKTNGLLRRGDLIGVTGYAGKSKKGELSVFPTSMQLLAPCLHMLPNLKGGLMNQETRYRQRYLDLMTNDETRRVFQVRSVSIACFLDRGFD 694
            + +V+LE++G NPYPHKF  +TS+P+F  K+ N E G   E ++VS+AGR+ +KR  G KL+FY ++ADGA +Q+M+SL  YE  E  F K + +LRRGD+IG+ G+ GKSKKGELS+FP  + LL+PC+HMLP    GL  Q+TR+RQRYLDL+ NDETR VFQ R   I  F+ R  D
Sbjct:   79 KMLVELEKEGINPYPHKFHVSTSLPEFHEKYGNTEAGSHLEGEVVSVAGRLHSKRASGAKLVFYDLRADGAKIQVMSSLDTYENAEA-FAKIHSILRRGDIIGIKGFPGKSKKGELSIFPQQIVLLSPCMHMLPKAHYGLKLQDTRFRQRYLDLILNDETRGVFQTRG-KIINFIRRFLD 256
[Close]
BLAST of mRNA_H-elongata_contig120383.1571.1 vs. uniprot
Match: A0A067C397_SAPPC (Lysine--tRNA ligase n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C397_SAPPC)

HSP 1 Score: 187 bits (476), Expect = 3.860e-52
Identity = 91/169 (53.85%), Postives = 125/169 (73.96%), Query Frame = 2 
Query:  158 SRAIVQLEQDGTNPYPHKFLATTSIPDFVSKFQNIEDGQK-QEDIVSIAGRIAAKREQG-KLLFYTIKADGANVQIMASLGDYEGGEEEFWKTNGLLRRGDLIGVTGYAGKSKKGELSVFPTSMQLLAPCLHMLPNLKGGLMNQETRYRQRYLDLMTNDETRRVFQVRS 658
            ++ + +LE DG NPYPHKF  T+S+PDFV+K+   E G     ++VS+AGR+ +KR  G KL FY + ADGA++Q+M+S+  Y   E  + + +  LRRGDL+G+TG+ GKSKKGELS+FP S+ LL+PC+HMLP    GL NQ+TR+RQRYLDL+ NDETR+VF  R+
Sbjct:   73 TKLLAELEADGINPYPHKFEVTSSVPDFVAKYHGCEAGAHIATELVSVAGRLMSKRASGAKLHFYGLNADGASIQVMSSIDTYVNAEA-YARIHASLRRGDLVGITGFPGKSKKGELSIFPQSIVLLSPCMHMLPKAHYGLSNQDTRFRQRYLDLILNDETRKVFTTRA 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120383.1571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM77_ECTSI1.780e-8778.57Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835Z3J2_9STRA5.300e-6261.33Lysine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
W4G6B8_9STRA1.500e-5654.14Lysyl-tRNA synthetase n=1 Tax=Aphanomyces astaci T... [more]
A0A485LHE4_9STRA3.060e-5653.04Lysine--tRNA ligase n=1 Tax=Aphanomyces stellatus ... [more]
A0A8K1CEE6_PYTOL3.910e-5655.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XLI0_9STRA8.170e-5553.04Lysyl-tRNA synthetase (Fragment) n=1 Tax=Nothophyt... [more]
F0WNT8_9STRA5.110e-5454.17Lysine--tRNA ligase n=1 Tax=Albugo laibachii Nc14 ... [more]
A0A6G0WLL8_9STRA1.950e-5351.93Lysine--tRNA ligase n=1 Tax=Aphanomyces euteiches ... [more]
K3X9C3_GLOUD2.920e-5353.89Lysine--tRNA ligase n=1 Tax=Globisporangium ultimu... [more]
A0A067C397_SAPPC3.860e-5253.85Lysine--tRNA ligase n=4 Tax=Saprolegniaceae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120383contigH-elongata_contig120383:48..1937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue7.1e-42
Seed eggNOG ortholog2880.D8LM77
Preferred nameCARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866,ko:K01868,ko:K01873,ko:K01875,ko:K01883,ko:K03232,ko:K04567,ko:K15410
KEGG ReactionR02918,R03650,R03658,R03662,R03663,R03665,R08218
KEGG Pathwayko00970,ko05168,map00970,map05168
KEGG ModuleM00359,M00360
GOsGO:0000049,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005853,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006414,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.lysyl-tRNA aminoacylation
EggNOG OGsCOG1190@1,COG2092@1,KOG1668@2759,KOG1885@2759
EC6.1.1.1,6.1.1.11,6.1.1.16,6.1.1.3,6.1.1.6,6.1.1.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Exons4
Model size700
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120383.1571.1prot_H-elongata_contig120383.1571.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120383 790..1937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.0764234-UTR-H-elongata_contig120383:47..3271622929706.0764234-UTR-H-elongata_contig120383:47..327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120383 48..327 +
1691679126.2305045-UTR-H-elongata_contig120383:47..3271691679126.2305045-UTR-H-elongata_contig120383:47..327Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120383 48..327 +
1622929706.0929463-UTR-H-elongata_contig120383:690..7891622929706.0929463-UTR-H-elongata_contig120383:690..789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120383 691..789 +
1691679126.2401757-UTR-H-elongata_contig120383:690..7891691679126.2401757-UTR-H-elongata_contig120383:690..789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig120383 691..789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.1091192-CDS-H-elongata_contig120383:789..8371622929706.1091192-CDS-H-elongata_contig120383:789..837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120383 790..837 +
1691679126.2474976-CDS-H-elongata_contig120383:789..8371691679126.2474976-CDS-H-elongata_contig120383:789..837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120383 790..837 +
1622929706.1273437-CDS-H-elongata_contig120383:1221..13801622929706.1273437-CDS-H-elongata_contig120383:1221..1380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120383 1222..1380 +
1691679126.255095-CDS-H-elongata_contig120383:1221..13801691679126.255095-CDS-H-elongata_contig120383:1221..1380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120383 1222..1380 +
1622929706.1438942-CDS-H-elongata_contig120383:1823..19371622929706.1438942-CDS-H-elongata_contig120383:1823..1937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120383 1824..1937 +
1691679126.270903-CDS-H-elongata_contig120383:1823..19371691679126.270903-CDS-H-elongata_contig120383:1823..1937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120383 1824..1937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120383.1571.1

>prot_H-elongata_contig120383.1571.1 ID=prot_H-elongata_contig120383.1571.1|Name=mRNA_H-elongata_contig120383.1571.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MASLGDYEGGEEEFWKTNGLLRRGDLIGVTGYAGKSKKGELSVFPTSMQL
LAPCLHMLPNLKGGLMNQETRYRQRYLDLMTNDETRRVFQVRSVSIACFL
DRGFDC*
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mRNA from alignment at H-elongata_contig120383:48..1937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120383.1571.1 ID=mRNA_H-elongata_contig120383.1571.1|Name=mRNA_H-elongata_contig120383.1571.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1890bp|location=Sequence derived from alignment at H-elongata_contig120383:48..1937+ (Himanthalia elongata Himel1 dioecious)
TTTCCTGCGATCGCTTATGGCACAGGGCGCGTGTGGATCACAGAAGAGCA
TTGCTTCGCCAGCTTGTCGAGTTTATGTCTCAAGTCGTATAGTTTTTACG
CCCCAGGACTATTAGACTTCCATCTGACCACGGCACTCCACCGCGGTGGT
CTTACTGAGCAGGGCAATCGTACAGCTTGAGCAGGATGGAACCAACCCCT
ACCCCCACAAGTTCCTAGCGACGACGAGCATTCCCGACTTCGTGTCCAAA
TTCCAGAATATCGAAGATGGGCAGAAGCAGGTGAAACGACTCTGCCGCTT
GCCGAATGAAAGCATCCCCGTTACTCCCTCCCCCGACTGTTTTTATCGAG
TTCAGCTGCGTCCGTGTGCGAACGGCCAGTGAGGACGGGACAATACCCCG
TCCCCTACTCGAGACATTAGATTTCCACAAGATGTTTACGGTGTCTTTTT
TTTAATTACAGCGCGTTCTTGCGGTTGTGCACGTCTCGTTAGAGGATCGT
GATATCACCCCACGCAGAGAGCAACCGGGCATGTTTTGATTCCTTCCGAA
TCATGCGCCTCCTAAACCACTTGCTCCGACATCGTCGACCTCTCAGCATG
CTGACCGCTCGCAATCGATGATATTGGGTCGCTTTATTTTCAGGAGGATA
TCGTTTCCATAGCAGGCCGAATAGCGGCCAAGCGCGAGCAGGGCAAGCTT
TTATTCTACACTATCAAGGCAGATGGCGCCAACGTGCAGATCATGGCTTC
TCTCGGTGACTACGAGGGTGGGGAGGAGGAATTCTGGAAGGTGTGTGGAT
AGCGAAGGCAAGGGGTAAATGGGAGTGTGCTGGGGGGGAAAGGGGAGAAC
CATGAGGGCTTTGAGGATGAAAGAGGGACGCGGAAAGGCCACGGCATCAA
GCATGAAAAAGATAAAGCAGATACGGTATCCCATGCTTTTTCGAAATAAG
AACACGTTGCAAACTGAGCGGGTTTCGCTTTTTAGGCTAAGCATCGGGCT
AGCCTGATCAGTACCCAGACTTGGCCGATCTGGCCGTTAAACGAAAATTA
TACGCTCTCTGACGTGCTCTACCGTATTGCGCGAAGATCCCGGGCATTGG
TTACTGCCTGGTCTGCCTCTCAAATAGCCCCCTACCTCACACCATCACCC
GATACACGCCTCGAACGAATCCAGACTAATGGGCTTCTCCGGAGAGGTGA
CTTGATTGGTGTCACAGGCTACGCTGGGAAATCCAAGAAGGGAGAGCTGT
CGGTATTCCCCACGTCGATGCAGCTGCTGGCGCCGTGTCTCCATATGCTC
CCGAACCTTAAGGGAGGACTTATGAATCAGGAGGTGTGCGTGGAGTTGTG
GTGCGGGGACGGCGTGTTTCCCGTGTACTGTGGCAGGGCCCCGATTGCAT
CCTATGCTTCTAGGCCCACCGCGACCATTCCCAACGGGTGTCGAAGTGTG
GCGAGGCGTTTCCTTGTGCACTAAAAGAGTAAAGATTGGGAGGCATTTTA
AAGGTTTGCATGCCTTGGCTGTTAGGCCATTAACCAGGCGTTCTCGGGGG
GGGGCAAAGCGTTTTTAGCCAGGCTGCGCTAGCGGAAGGGGGAGGTGATT
GTGTTTTCAGCTAGGTTAGCCTTTTCGGCTCTACAACAAAGTCTTGCCCG
CGTGCACCCTGTCCCGAAGATCGCTCGAGCCCGACGCATACATAAACAGA
GCTTTATATATATATATATATATATATTTCTCCCCGCGTGCTGTGTTTGA
ACCGTGTCCGTCTGTGTGGCATACAGACGCGCTACCGCCAGCGCTACCTA
GACCTGATGACCAACGACGAAACCAGAAGGGTGTTCCAGGTCCGTTCCGT
CTCGATCGCATGTTTTCTCGACCGAGGCTTCGATTGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig120383:48..1937+

>mRNA_H-elongata_contig120383.1571.1 ID=mRNA_H-elongata_contig120383.1571.1|Name=mRNA_H-elongata_contig120383.1571.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig120383:48..1937+ (Himanthalia elongata Himel1 dioecious)
ATGGCTTCTCTCGGTGACTACGAGGGTGGGGAGGAGGAATTCTGGAAGAT
GGCTTCTCTCGGTGACTACGAGGGTGGGGAGGAGGAATTCTGGAAGACTA
ATGGGCTTCTCCGGAGAGGTGACTTGATTGGTGTCACAGGCTACGCTGGG
AAATCCAAGAAGGGAGAGCTGTCGGTATTCCCCACGTCGATGCAGCTGCT
GGCGCCGTGTCTCCATATGCTCCCGAACCTTAAGGGAGGACTTATGAATC
AGGAGACTAATGGGCTTCTCCGGAGAGGTGACTTGATTGGTGTCACAGGC
TACGCTGGGAAATCCAAGAAGGGAGAGCTGTCGGTATTCCCCACGTCGAT
GCAGCTGCTGGCGCCGTGTCTCCATATGCTCCCGAACCTTAAGGGAGGAC
TTATGAATCAGGAGACGCGCTACCGCCAGCGCTACCTAGACCTGATGACC
AACGACGAAACCAGAAGGGTGTTCCAGGTCCGTTCCGTCTCGATCGCATG
TTTTCTCGACCGAGGCTTCGATTGTTGAACGCGCTACCGCCAGCGCTACC
TAGACCTGATGACCAACGACGAAACCAGAAGGGTGTTCCAGGTCCGTTCC
GTCTCGATCGCATGTTTTCTCGACCGAGGCTTCGATTGTTGA
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