mRNA_H-elongata_contig80519.15700.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80519.15700.1
Unique NamemRNA_H-elongata_contig80519.15700.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80519.15700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80519contigH-elongata_contig80519:2390..2789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size401
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.5869699-CDS-H-elongata_contig80519:2389..27011622931210.5869699-CDS-H-elongata_contig80519:2389..2701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80519 2390..2701 +
1691679743.0462008-CDS-H-elongata_contig80519:2389..27011691679743.0462008-CDS-H-elongata_contig80519:2389..2701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80519 2390..2701 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.601259-UTR-H-elongata_contig80519:2701..27891622931210.601259-UTR-H-elongata_contig80519:2701..2789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80519 2702..2789 +
1691679743.0581057-UTR-H-elongata_contig80519:2701..27891691679743.0581057-UTR-H-elongata_contig80519:2701..2789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80519 2702..2789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80519.15700.1prot_H-elongata_contig80519.15700.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80519 2390..2701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80519.15700.1

>prot_H-elongata_contig80519.15700.1 ID=prot_H-elongata_contig80519.15700.1|Name=mRNA_H-elongata_contig80519.15700.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
EPYPRDIGAARVLPPISVVKESKYGKNRAVPGRTCLCGIGAAIHVFVVSV
LKTDTHTHTHNLIKEGVACATYLLLNENTHDWTKTFSLSTVPGGTCLVRH
RGS*
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mRNA from alignment at H-elongata_contig80519:2390..2789+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80519.15700.1 ID=mRNA_H-elongata_contig80519.15700.1|Name=mRNA_H-elongata_contig80519.15700.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=400bp|location=Sequence derived from alignment at H-elongata_contig80519:2390..2789+ (Himanthalia elongata Himel1 dioecious)
GAGCCATATCCACGCGACATCGGCGCAGCGCGTGTCTTACCTCCGATTTC
AGTCGTAAAAGAATCAAAGTATGGAAAAAATAGGGCTGTACCTGGTCGAA
CGTGTCTGTGTGGCATCGGAGCAGCTATCCATGTTTTCGTTGTTTCAGTG
CTAAAAACAGACACACACACACACACACATAATTTAATTAAAGAAGGAGT
CGCGTGTGCGACATATCTACTGCTAAATGAAAACACACATGACTGGACGA
AAACCTTCTCTTTGAGTACTGTGCCTGGTGGAACGTGTCTGGTAAGGCAT
CGGGGCAGCTAGTTATCCATGCTTTAGTTGCTTCAGTGCTAACCCCCCCC
CACACACACACACACAATGTAATTACACGATTAATCACGCGTGACGATTT
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Coding sequence (CDS) from alignment at H-elongata_contig80519:2390..2789+

>mRNA_H-elongata_contig80519.15700.1 ID=mRNA_H-elongata_contig80519.15700.1|Name=mRNA_H-elongata_contig80519.15700.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig80519:2390..2789+ (Himanthalia elongata Himel1 dioecious)
GAGCCATATCCACGCGACATCGGCGCAGCGCGTGTCTTACCTCCGATTTC
AGTCGTAAAAGAATCAAAGTATGGAAAAAATAGGGCTGTACCTGGTCGAA
CGTGTCTGTGTGGCATCGGAGCAGCTATCCATGTTTTCGTTGTTTCAGTG
CTAAAAACAGACACACACACACACACACATAATTTAATTAAAGAAGGAGT
CGCGTGTGCGACATATCTACTGCTAAATGAAAACACACATGACTGGACGA
AAACCTTCTCTTTGAGTACTGTGCCTGGTGGAACGTGTCTGGTAAGGCAT
CGGGGCAGCTAGGAGCCATATCCACGCGACATCGGCGCAGCGCGTGTCTT
ACCTCCGATTTCAGTCGTAAAAGAATCAAAGTATGGAAAAAATAGGGCTG
TACCTGGTCGAACGTGTCTGTGTGGCATCGGAGCAGCTATCCATGTTTTC
GTTGTTTCAGTGCTAAAAACAGACACACACACACACACACATAATTTAAT
TAAAGAAGGAGTCGCGTGTGCGACATATCTACTGCTAAATGAAAACACAC
ATGACTGGACGAAAACCTTCTCTTTGAGTACTGTGCCTGGTGGAACGTGT
CTGGTAAGGCATCGGGGCAGCTAG
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