mRNA_H-elongata_contig80373.15689.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80373.15689.1
Unique NamemRNA_H-elongata_contig80373.15689.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: D8LMQ5_ECTSI (Pol1-like DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ5_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.600e-23
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 177
            RYRKLPDI S+D G+VGH TRAAINTPIQGGAADVAMVAMI +VRSPLLK++GWKLLLQ
Sbjct: 1360 RYRKLPDITSNDRGKVGHGTRAAINTPIQGGAADVAMVAMIGIVRSPLLKKLGWKLLLQ 1418
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BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A6H5K9D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.610e-23
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 177
            RYRKLPDI S+D G+VGH TRAAINTPIQGGAADVAMVAMI +VRSPLLK++GWKLLLQ
Sbjct: 1489 RYRKLPDITSNDRGKVGHGTRAAINTPIQGGAADVAMVAMIGIVRSPLLKKLGWKLLLQ 1547
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BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S2BNW5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNW5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.800e-21
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 177
            RYRKLP+I S D G+ GHS RAAINTPIQGGAADV MVAM+K+  SPLLK++G+KLLLQ
Sbjct:   87 RYRKLPEINSRDRGKQGHSARAAINTPIQGGAADVVMVAMVKINESPLLKKLGYKLLLQ 145
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BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S3H904_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H904_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.420e-17
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 177
            RYRKL + K      VGH+ RAAINTPIQG AAD+ M+AMIKL +SP+LKE+ WKLLLQ
Sbjct:   16 RYRKLSEAKGPQGPAVGHALRAAINTPIQGSAADIVMMAMIKLWKSPVLKELNWKLLLQ 74
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BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S2RYY7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RYY7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.970e-16
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 177
            RYR LP+  S +    GH+ RA+INTPIQGGAADVAM+AMIK+ +SPLLK++GW LL+Q
Sbjct:   87 RYRHLPEAGSKNRKLAGHAERASINTPIQGGAADVAMMAMIKINKSPLLKKLGWILLMQ 145
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BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A4Q3P529_9BACT (POLAc domain-containing protein n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=A0A4Q3P529_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 1.490e-15
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 177
            RYRKLP  +       GH+ RAAINTPIQG AAD+ M+AM++L RSPLLKE GW+LLLQ
Sbjct:  285 RYRKLPQARGDSGLEQGHALRAAINTPIQGSAADIVMMAMLRLWRSPLLKERGWRLLLQ 343
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BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S1YXE2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YXE2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.840e-15
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 RYRKLPD-IKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 177
            RYR+LPD +   +W  VG + RA+INTPIQGGAADVAM+AMIK+  SP+LK++GW LLLQ
Sbjct:  611 RYRQLPDAMDKKNWRNVGRAERASINTPIQGGAADVAMMAMIKINDSPILKKLGWILLLQ 670
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BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S1D2I8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D2I8_CYCTE)

HSP 1 Score: 73.6 bits (179), Expect = 2.950e-15
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 177
            RYR LP  K+ D   +GHS RA+INTPIQGGAADVAM+AM+K+  +  LK +GW LL+Q
Sbjct:    6 RYRDLPGAKAKDRKLLGHSERASINTPIQGGAADVAMMAMVKINNNEKLKRLGWILLMQ 64
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BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S2USC7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2USC7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.360e-15
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 177
            RYR+LP   S   G VGH+ RA+INTPIQGGAADVAM+AMIK+  S  LK +GW LL+Q
Sbjct:  153 RYRQLPGAMSDQRGLVGHAERASINTPIQGGAADVAMMAMIKINNSETLKNLGWVLLMQ 211
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BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S2SQ26_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ26_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.580e-15
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 177
            R R+LPDI +   G  GH  RAAINTPIQG AADV M+AM+KL +SP L+E+G+KLLLQ
Sbjct:   53 RERRLPDITAKSRGARGHMERAAINTPIQGSAADVVMMAMLKLNQSPRLEELGYKLLLQ 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMQ5_ECTSI1.600e-2384.75Pol1-like DNA polymerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5K9D2_9PHAE1.610e-2384.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2BNW5_9STRA9.800e-2174.58Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3H904_9STRA1.420e-1766.10Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2RYY7_9STRA3.970e-1664.41Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A4Q3P529_9BACT1.490e-1564.41POLAc domain-containing protein n=1 Tax=Cytophagac... [more]
A0A7S1YXE2_9STRA2.840e-1565.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1D2I8_CYCTE2.950e-1561.02Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2USC7_9STRA4.360e-1564.41Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2SQ26_9STRA4.580e-1564.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80373contigH-elongata_contig80373:1274..1480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D8LMQ5
KEGG rclassRC02795
KEGG koko:K02335
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
GOsGO:0000002,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0032042,GO:0033258,GO:0033259,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931209.4488182-CDS-H-elongata_contig80373:1273..14801622931209.4488182-CDS-H-elongata_contig80373:1273..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80373 1274..1480 -
1691679742.5915742-CDS-H-elongata_contig80373:1273..14801691679742.5915742-CDS-H-elongata_contig80373:1273..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80373 1274..1480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80373.15689.1prot_H-elongata_contig80373.15689.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80373 1274..1480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80373.15689.1

>prot_H-elongata_contig80373.15689.1 ID=prot_H-elongata_contig80373.15689.1|Name=mRNA_H-elongata_contig80373.15689.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLK
EMGWKLLLQARFLFEMAR*
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mRNA from alignment at H-elongata_contig80373:1274..1480-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80373.15689.1 ID=mRNA_H-elongata_contig80373.15689.1|Name=mRNA_H-elongata_contig80373.15689.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig80373:1274..1480- (Himanthalia elongata Himel1 dioecious)
AGATATCGGAAACTCCCCGATATCAAGTCTTCCGATTGGGGCCGCGTCGG
GCACAGCACCCGAGCCGCCATCAACACGCCTATCCAGGGAGGGGCAGCGG
ACGTGGCCATGGTGGCCATGATCAAGCTCGTTAGAAGTCCGTTACTCAAG
GAGATGGGCTGGAAGCTGCTGCTGCAGGCACGTTTCCTTTTTGAGATGGC
ACGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig80373:1274..1480-

>mRNA_H-elongata_contig80373.15689.1 ID=mRNA_H-elongata_contig80373.15689.1|Name=mRNA_H-elongata_contig80373.15689.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig80373:1274..1480- (Himanthalia elongata Himel1 dioecious)
AGATATCGGAAACTCCCCGATATCAAGTCTTCCGATTGGGGCCGCGTCGG
GCACAGCACCCGAGCCGCCATCAACACGCCTATCCAGGGAGGGGCAGCGG
ACGTGGCCATGGTGGCCATGATCAAGCTCGTTAGAAGTCCGTTACTCAAG
GAGATGGGCTGGAAGCTGCTGCTGCAGGCACGTTTCCTTTTTGAGATGGC
ACGTTGAAGATATCGGAAACTCCCCGATATCAAGTCTTCCGATTGGGGCC
GCGTCGGGCACAGCACCCGAGCCGCCATCAACACGCCTATCCAGGGAGGG
GCAGCGGACGTGGCCATGGTGGCCATGATCAAGCTCGTTAGAAGTCCGTT
ACTCAAGGAGATGGGCTGGAAGCTGCTGCTGCAGGCACGTTTCCTTTTTG
AGATGGCACGTTGA
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