prot_H-elongata_contig80328.15684.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80328.15684.1
Unique Nameprot_H-elongata_contig80328.15684.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length318
Homology
BLAST of mRNA_H-elongata_contig80328.15684.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.510e-43
Identity = 84/135 (62.22%), Postives = 102/135 (75.56%), Query Frame = 0
Query:  184 ISPVIEEMLRHQGGVLERHGKRELILSFARQRWEEPPPPVEGNLRQVAENLLNLLTLIDEEGFFAEPVTETAAPGYIAAILRPMDLGTMRRRAEGGAYDSMDMLQDDLVLVVANCLSYNAPDTIFSEAAMSLARQ 318
            IS +I  ML HQ  VL RHGK  +IL  AR+RW+ PPPPV+ NL  + E+LL +L  IDEEG+FAEPV+E+AAPGYI+AILRPMDLGT+R R EG  Y  +  LQDDL+LVVANC +YN+P T+F  AA SLA Q
Sbjct: 1835 ISDLINGMLEHQKDVLARHGKLGVILRLARERWQSPPPPVDANLSALTEHLLGILGAIDEEGWFAEPVSESAAPGYISAILRPMDLGTVRGRLEGRRYRDVAELQDDLLLVVANCFTYNSPGTLFEAAATSLAEQ 1969          
BLAST of mRNA_H-elongata_contig80328.15684.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 2.620e-25
Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = 0
Query:  214 QRWEEPPPPVEGNLRQVA-----EN--LLNLLTLIDEEGFFAEPVTETAAPGYIAAILRPMDLGTMRRRAEGGAYDSMDMLQDDLVLVVANCLSYNAPDTIFSEAAMSLARQ 318
            +R E+P     G+L   A     EN  LL +L  IDEEG+FAEPV+E AAPGYI+AILRPMDLGT+R R EG  Y  +  LQDDL+LVVANC +YN+P T+F  AA SLA Q
Sbjct: 1830 RRAEQPASAAAGDLPNGAVQGAGENGHLLGILGAIDEEGWFAEPVSEAAAPGYISAILRPMDLGTVRGRLEGRRYRDVSELQDDLLLVVANCFTYNSPGTMFEAAATSLAEQ 1941          
BLAST of mRNA_H-elongata_contig80328.15684.1 vs. uniprot
Match: UPI0015A81816 (bromodomain-containing protein 1-like isoform X1 n=6 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015A81816)

HSP 1 Score: 81.3 bits (199), Expect = 2.950e-13
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 0
Query:  234 LLNLLTLIDEEGFFAEPVTETAAPGYIAAILRPMDLGTMRRRAEGGAYDSMDMLQDDLVLVVANCLSYNAPDTIFSEAAMSLARQ 318
            +LN L   D+   FA+PV+    P Y+  I RPMD  TMRRR E   Y  +D  +DD  L+VANC+ YNA DT+F  AA+ L  Q
Sbjct:  577 VLNQLQEKDQARIFAQPVSVKEVPDYLDHIKRPMDFSTMRRRVEAQGYRGLDQFEDDFNLIVANCMKYNAKDTVFYRAAVRLRDQ 661          
BLAST of mRNA_H-elongata_contig80328.15684.1 vs. uniprot
Match: A0A8B7NCE2_HYAAZ (bromodomain-containing protein 7-like n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NCE2_HYAAZ)

HSP 1 Score: 79.7 bits (195), Expect = 6.820e-13
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 0
Query:  223 VEGNLRQVAENLLNLLTLIDEEGFFAEPVTETAAPGYIAAILRPMDLGTMRRRAEGGAYDSMDMLQDDLVLVVANCLSYNAPDTIFSEAAMSL 315
            V    +++  +LL  L   D   FF EPVT+  APGY + I  PM   TMR +   GAY S+   +DD+ L+VANCL YN PDT++  A   L
Sbjct:  112 VAAAFKELLTHLLKQLEKKDINQFFLEPVTDLIAPGYSSIITEPMCFYTMREKIAQGAYSSLTEYEDDVKLIVANCLKYNGPDTVYYSAGKKL 204          
BLAST of mRNA_H-elongata_contig80328.15684.1 vs. uniprot
Match: A0A8C4R743_EPTBU (Bromodomain and PHD finger containing, 1 n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R743_EPTBU)

HSP 1 Score: 77.8 bits (190), Expect = 4.110e-12
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 0
Query:  235 LNLLTLIDEEGFFAEPVTETAAPGYIAAILRPMDLGTMRRRAEGGAYDSMDMLQDDLVLVVANCLSYNAPDTIFSEAAMSLARQ 318
            L LL   D  G+FA+PV+   A  Y+  I +PMD  TMR R E   Y S+D L+ D +L+++NC+ YNA DT+F  AAM L  Q
Sbjct:  707 LALLQEKDAGGYFAQPVSLEEASDYLDHINQPMDFSTMRARLEAHEYSSLDTLEQDFMLILSNCMIYNAKDTVFYRAAMRLREQ 790          
BLAST of mRNA_H-elongata_contig80328.15684.1 vs. uniprot
Match: A0A061QRC8_9CHLO (Bromodomain-containing protein 7/9 (Fragment) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QRC8_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 5.050e-12
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 0
Query:  219 PPPPVEGNLRQVAENLLNLLTLIDEEGFFAEPVTETAAPGYIAAILRPMDLGTMRRRAEGGAYDSMDMLQDDLVLVVANCLSYNAPDTIFSEAAMSL 315
            P P   G  R+  E +++ +   D    F EPVTE  APGY   I  PMD  T+R R     Y S D L++DLVL+  N ++YN P+T+F + A+++
Sbjct:  243 PRPAARGPPRKELEKVVDAIQKKDTYDIFREPVTEDLAPGYFDVISNPMDFTTIRARISEERYASWDELEEDLVLMFDNAMTYNGPETLFHKLALTM 339          
BLAST of mRNA_H-elongata_contig80328.15684.1 vs. uniprot
Match: UPI0004F00069 (bromodomain and PHD finger-containing protein 3-like n=1 Tax=Merops nubicus TaxID=57421 RepID=UPI0004F00069)

HSP 1 Score: 74.3 bits (181), Expect = 9.860e-12
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 0
Query:  235 LNLLTLIDEEGFFAEPVTETAAPGYIAAILRPMDLGTMRRRAEGGAYDSMDMLQDDLVLVVANCLSYNAPDTIFSEAAMSL 315
            L+LL   D    FAEPV     P Y+  I +PMD  TMRR+ E   Y +++  ++D  L+VANC+ YNA DTIF  AA+ L
Sbjct:   67 LDLLQEKDAAQIFAEPVDLNEVPDYLEFISKPMDFSTMRRKLESHLYRTLEEFEEDFNLIVANCMRYNAKDTIFHRAAVRL 147          
BLAST of mRNA_H-elongata_contig80328.15684.1 vs. uniprot
Match: A0A3Q0DGN3_MESAU (bromodomain and PHD finger-containing protein 3 isoform X2 n=13 Tax=Muroidea TaxID=337687 RepID=A0A3Q0DGN3_MESAU)

HSP 1 Score: 76.3 bits (186), Expect = 1.340e-11
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 0
Query:  235 LNLLTLIDEEGFFAEPVTETAAPGYIAAILRPMDLGTMRRRAEGGAYDSMDMLQDDLVLVVANCLSYNAPDTIFSEAAMSL 315
            L+LL   D    FAEPV+ +  P Y+  I +PMD  TMRR+ E   Y +++  ++D  L+VANC+ YNA DTIF  AA+ L
Sbjct:  601 LDLLQEKDPAHIFAEPVSLSEVPDYLEFISKPMDFSTMRRKLESHLYHTLEEFEEDFNLIVANCMKYNAKDTIFHRAAVRL 681          
BLAST of mRNA_H-elongata_contig80328.15684.1 vs. uniprot
Match: A0A0N1IBM7_PAPXU (Peregrin n=2 Tax=Papilio xuthus TaxID=66420 RepID=A0A0N1IBM7_PAPXU)

HSP 1 Score: 76.3 bits (186), Expect = 1.360e-11
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 0
Query:  204 KRELILSFARQRWEEPPPPVEGNLRQVAENLLNLLTLIDEEGFFAEPVTETAAPGYIAAILRPMDLGTMRRRAEGGAYDSMDMLQDDLVLVVANCLSYNAPDTIFSEAAMSLARQ 318
            KRE + +   + WE          R     LL LL L D    F EPV     P Y   + +PMDL TM ++ E GAY ++D ++ D  L++ NCL+YN  DT+F +A + +  Q
Sbjct:  571 KRERLKAEHTRVWERCVMHALRPARAALHKLLRLLRLRDTSDVFTEPVDLNEVPDYSTVVKQPMDLSTMGKKLERGAYRTIDDVETDFNLMIDNCLTYNNKDTVFYKAGIKMREQ 685          
BLAST of mRNA_H-elongata_contig80328.15684.1 vs. uniprot
Match: UPI0018650DF3 (bromodomain-containing protein 1-like isoform X1 n=4 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI0018650DF3)

HSP 1 Score: 76.3 bits (186), Expect = 1.360e-11
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 0
Query:  233 NLLNLLTLIDEEGFFAEPVTETAAPGYIAAILRPMDLGTMRRRAEGGAYDSMDMLQDDLVLVVANCLSYNAPDTIFSEAAMSLARQ 318
            ++L+ L   D+   FA+PV+    P Y+  I  PMD  TMR+R E   Y ++D  +DD  L+VANC+ YNA DTIF  AA+ L  Q
Sbjct:  570 SVLDQLQEKDQAKIFAQPVSLKEVPDYLDHIKHPMDFSTMRKRIEAQGYRNLDEFEDDFSLIVANCMKYNAKDTIFYRAAVRLRDQ 655          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80328.15684.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTA2_9PHAE1.510e-4362.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP1_ECTSI2.620e-2558.04WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
UPI0015A818162.950e-1347.06bromodomain-containing protein 1-like isoform X1 n... [more]
A0A8B7NCE2_HYAAZ6.820e-1343.01bromodomain-containing protein 7-like n=1 Tax=Hyal... [more]
A0A8C4R743_EPTBU4.110e-1246.43Bromodomain and PHD finger containing, 1 n=2 Tax=E... [more]
A0A061QRC8_9CHLO5.050e-1239.18Bromodomain-containing protein 7/9 (Fragment) n=2 ... [more]
UPI0004F000699.860e-1245.68bromodomain and PHD finger-containing protein 3-li... [more]
A0A3Q0DGN3_MESAU1.340e-1145.68bromodomain and PHD finger-containing protein 3 is... [more]
A0A0N1IBM7_PAPXU1.360e-1135.65Peregrin n=2 Tax=Papilio xuthus TaxID=66420 RepID=... [more]
UPI0018650DF31.360e-1144.19bromodomain-containing protein 1-like isoform X1 n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 290..309
score: 33.91
coord: 272..290
score: 22.88
coord: 256..272
score: 44.37
IPR001487BromodomainSMARTSM00297bromo_6coord: 223..318
e-value: 3.0E-12
score: 56.7
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 246..312
e-value: 2.2E-14
score: 53.3
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 247..309
score: 15.024
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 224..318
e-value: 1.3E-22
score: 81.6
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 213..316
NoneNo IPR availablePANTHERPTHR22881BROMODOMAIN CONTAINING PROTEINcoord: 12..317
NoneNo IPR availablePANTHERPTHR22881:SF11SWI/SNF NUCLEOSOME REMODELING COMPLEX COMPONENTcoord: 12..317

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80328contigH-elongata_contig80328:524..1956 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80328.15684.1mRNA_H-elongata_contig80328.15684.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80328 524..2772 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80328.15684.1 ID=prot_H-elongata_contig80328.15684.1|Name=mRNA_H-elongata_contig80328.15684.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=318bp
MTKRKIRRMRRRRKRKTRRIDGALRSKRKRSPTARYIDEVYSASPRGAVT
RGRGRSSSGASGGAEGATSSRGSKRRRASSSNNRSYFYRDESEVEEEDED
QYEDQRGRDARASAERQHTVSNGGRVVNGSAFRAATANGVVAKSAGKGPA
VDNRAGGGGRSGGGSGSGSGGGSESASVEAYHGISPVIEEMLRHQGGVLE
RHGKRELILSFARQRWEEPPPPVEGNLRQVAENLLNLLTLIDEEGFFAEP
VTETAAPGYIAAILRPMDLGTMRRRAEGGAYDSMDMLQDDLVLVVANCLS
YNAPDTIFSEAAMSLARQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf