mRNA_H-elongata_contig80289.15681.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80289.15681.1
Unique NamemRNA_H-elongata_contig80289.15681.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80289.15681.1 vs. uniprot
Match: D7G8I5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8I5_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 6.980e-29
Identity = 94/204 (46.08%), Postives = 104/204 (50.98%), Query Frame = 1 
Query:    1 PLLAGLELTSAQRITTNRVQAAISADFTLRRLMLLRRCDVTVRSFLRQKQGKDSEAAEMPTELKKKQKQQQQMTFAGALLLGHGPRRL-------------ERVAHPSPLRQTKRDSLKDEPDRITVDDALAAPRNVAWQHLRKITESSD-------EAKTSTKMAT-----IAEVPHRGGRVDAARAGPAMPAWTTRKEFDGA 537
            PLL GLELT+AQ+ T +RV AAI+ADF LRRLMLLRRCDVTVRSFLR      S   E                  G    G G +               E+ A   P  +TKR +L D+P  ITVDDAL AP +VA QH  K  E  D       E  T TK A      IAEV  RGGRV  AR GP    W TRKEFD A
Sbjct:  116 PLLDGLELTAAQKQTVDRVHAAIAADFALRRLMLLRRCDVTVRSFLRDSISGGSGVGERK--------------HGGESAGGKGGQXXXXXXXXXXXXXDEEKFADLPPALRTKRQALLDKPREITVDDALIAPTSVARQHTHKTAEEYDGDGGGHGEHSTKTKKAVLPTADIAEVSDRGGRVSDARGGP---VWKTRKEFDKA 302
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BLAST of mRNA_H-elongata_contig80289.15681.1 vs. uniprot
Match: UPI000C76EABE (protein FAM98B-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76EABE)

HSP 1 Score: 62.8 bits (151), Expect = 1.340e-7
Identity = 63/193 (32.64%), Postives = 87/193 (45.08%), Query Frame = 1 
Query:    1 PLLAGLELTSAQRITTNRVQAAISADFTLRRLMLLRRCDVTVRSFL--RQKQGKDSEAAEMPTELKKKQKQQQQMTFAGALLLGHGPRRLERVAHPSPLRQTKRDSLKDEPDRITVDDALAAPRNVAWQHLRKITESSDEAKTSTKM--ATIAEVPHRGGRVDAARAGPA-MPAWTTRKEFDGARGRGGGRSG 564
            P+  G +LTS Q      +Q  +SAD++LRR MLL R D TV+SF    + Q ++ E A +  +L                                      R  L+D+P R+ + D LAA  + A   + K+  S+  A T T +    I EVP RGGR D   A P  MP W+ R+     +GRGGGR G
Sbjct:  188 PIFIG-DLTSTQWNQLEEIQTHLSADYSLRRRMLLTRLDATVQSFSWSEKVQQREGEIAVLYNKL--------------------------------------RSVLQDKP-RVGIPDLLAAREDAAI--MEKVCSSNSRAHTQTSLNKVMIGEVPDRGGRTDTMTAPPPEMPGWSQRQPD---QGRGGGRGG 335
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BLAST of mRNA_H-elongata_contig80289.15681.1 vs. uniprot
Match: A0A4D9CVS5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVS5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.920e-5
Identity = 52/164 (31.71%), Postives = 78/164 (47.56%), Query Frame = 1 
Query:    1 PLLAGLELTSAQRITTNRVQAAISADFTLRRLMLLRRCDVTVRSFLRQKQGKDSEAAEMPTELKKKQKQQQQMTFAGALLLGHGPRRLERVAHPSPLRQTKRDSLKDEPDRITVDDALAAPRNVAWQHLRKITESSDEA--KTSTKMATIAEVPHRGGRVDAAR 486
            P  + ++LT +QR     + A +  DF LRR M+L+R DV++RSFL                        +++   G++L+    +R+E        RQ  R+ + DE   I VD AL A + V +Q   KIT+       +++ K   I  VP RGGRVDA R
Sbjct:  270 PRKSEVQLTPSQRQMLEDIDAHLRNDFGLRRQMVLKRLDVSLRSFL----------------------WTERVAEGGSVLV----KRVEAA------RQGLREEVGDE---IGVDAALRAGKGVMYQQACKITQERGRGWGQSTVKRLVIGSVPDRGGRVDALR 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80289.15681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G8I5_ECTSI6.980e-2946.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI000C76EABE1.340e-732.64protein FAM98B-like n=1 Tax=Eurytemora affinis Tax... [more]
A0A4D9CVS5_9STRA6.920e-531.71Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80289contigH-elongata_contig80289:391..1930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUncharacterised protein family FAM98
Ec32 orthologEc-14_003140.1
Exons3
Model size807
Cds size807
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80289.15681.1prot_H-elongata_contig80289.15681.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80289 391..1930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931208.6507297-CDS-H-elongata_contig80289:390..5821622931208.6507297-CDS-H-elongata_contig80289:390..582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80289 391..582 +
1691679742.2341506-CDS-H-elongata_contig80289:390..5821691679742.2341506-CDS-H-elongata_contig80289:390..582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80289 391..582 +
1622931208.670599-CDS-H-elongata_contig80289:903..11131622931208.670599-CDS-H-elongata_contig80289:903..1113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80289 904..1113 +
1691679742.242256-CDS-H-elongata_contig80289:903..11131691679742.242256-CDS-H-elongata_contig80289:903..1113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80289 904..1113 +
1622931208.685271-CDS-H-elongata_contig80289:1525..19301622931208.685271-CDS-H-elongata_contig80289:1525..1930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80289 1526..1930 +
1691679742.250482-CDS-H-elongata_contig80289:1525..19301691679742.250482-CDS-H-elongata_contig80289:1525..1930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80289 1526..1930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80289.15681.1

>prot_H-elongata_contig80289.15681.1 ID=prot_H-elongata_contig80289.15681.1|Name=mRNA_H-elongata_contig80289.15681.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp
PLLAGLELTSAQRITTNRVQAAISADFTLRRLMLLRRCDVTVRSFLRQKQ
GKDSEAAEMPTELKKKQKQQQQMTFAGALLLGHGPRRLERVAHPSPLRQT
KRDSLKDEPDRITVDDALAAPRNVAWQHLRKITESSDEAKTSTKMATIAE
VPHRGGRVDAARAGPAMPAWTTRKEFDGARGRGGGRSGGRGRGGGQGGGR
GRGGGQGGGRWRGGGRKGGGGRGGQGGRGNHWGSGGGGRGGGEGNEGYMG
GGEHKRKWSGHGGRRQGY*
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mRNA from alignment at H-elongata_contig80289:391..1930+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80289.15681.1 ID=mRNA_H-elongata_contig80289.15681.1|Name=mRNA_H-elongata_contig80289.15681.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1540bp|location=Sequence derived from alignment at H-elongata_contig80289:391..1930+ (Himanthalia elongata Himel1 dioecious)
CCGCTCCTGGCGGGGTTGGAACTAACATCTGCGCAGAGGATAACAACAAA
CAGGGTTCAAGCGGCCATTTCGGCAGACTTTACGCTCAGGCGGCTGATGC
TCCTCCGGCGCTGCGACGTCACGGTTCGATCGTTCCTCCGCCAGAAACAA
GGGAAAGACAGCGAAGCGGCGGAGATGCCCACAGAGTTGAAGGTGAGGGC
CTAAAGCTTGTCCCGCCGTAGAGTTATAGTTTTTATTTCCTACTCGCAGC
GGCAAAGTTTTCGAGGTTGCCAGTGTGATGCAGATATCATCCCCTCTCCA
CCCACCCCGAGGTCCAACGAACGATGATGAAGTGATGTGTTTATTACCTA
TTATTAATATAAAATAAAATAAAATAGAAGGCTCTCTAAAACCCGCGAAC
GCGTTACCACGCCACGCCAAACCAAACCAAAGGTATTGCCATTTTCGCCC
CCCAAAGTGAGTACACATTCGTACAATTGCAAAGACGCAATATGGGTATG
TATGTAACCGAAGAAGAAGCAGAAGCAGCAGCAGCAGATGACCTTTGCTG
GTGCGTTGCTGCTCGGTCACGGACCACGACGACTTGAGCGTGTCGCACAC
CCGTCTCCACTGCGACAGACGAAACGAGATTCTCTGAAGGACGAACCGGA
CCGGATCACGGTGGACGACGCGCTAGCGGCGCCGAGAAATGTAGCGTGGC
AGCACCTTCGCAAGATTACAGAGGTTAGATATCCCCTTCCCCTCATCGCA
CCGAGAATGTCGCTGCGTTAAGAAGGCTGCATTAACTCCTTCGGCTCCGC
TGCCTGAGAGGAAAGGACAGAAAAGAGCGGTTTGGCCGGATGGAAGGGAG
GAGTATTGCTCCGACGATCGTGTCAGTTTTTGCCCACGAACCTTAAAGCT
GCTCCGACACTACACGAGACCGGCCCGCAGGCCCTATAATTATGAACAGT
ATTAATAGGGATAACTGTACCTACCGCGAGGTTCTTCATTCGGCTGCGAG
AATGTGCGGAGTATCGATATTTCGATATTGCGGGTAATCCTTTTCTACTG
CGGAACAAATCCAGGGGCATTTCATCGAGTTTTTTGCCCAATTATTCTCC
CCCCCCACCGACCCGCCTTTGCCCTCTGACTCCAGAGCTCCGACGAAGCG
AAGACATCCACAAAGATGGCGACGATCGCAGAAGTGCCCCACCGCGGCGG
GCGCGTTGATGCGGCGCGCGCGGGTCCTGCGATGCCCGCGTGGACGACAC
GAAAGGAATTCGACGGGGCTAGAGGTAGAGGTGGTGGTCGAAGTGGCGGT
AGAGGTAGAGGTGGTGGTCAAGGTGGCGGTAGAGGTAGAGGTGGTGGCCA
AGGTGGCGGTCGATGGCGGGGTGGAGGTCGAAAAGGAGGCGGGGGAAGGG
GGGGGCAGGGGGGGAGGGGTAATCATTGGGGCAGCGGAGGGGGCGGCAGA
GGTGGAGGTGAAGGCAACGAAGGATACATGGGAGGCGGGGAACACAAGAG
GAAGTGGAGTGGGCATGGAGGTAGGCGACAAGGATATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig80289:391..1930+

>mRNA_H-elongata_contig80289.15681.1 ID=mRNA_H-elongata_contig80289.15681.1|Name=mRNA_H-elongata_contig80289.15681.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig80289:391..1930+ (Himanthalia elongata Himel1 dioecious)
CCGCTCCTGGCGGGGTTGGAACTAACATCTGCGCAGAGGATAACAACAAA
CAGGGTTCAAGCGGCCATTTCGGCAGACTTTACGCTCAGGCGGCTGATGC
TCCTCCGGCGCTGCGACGTCACGGTTCGATCGTTCCTCCGCCAGAAACAA
GGGAAAGACAGCGAAGCGGCGGAGATGCCCACAGAGTTGAAGCCGCTCCT
GGCGGGGTTGGAACTAACATCTGCGCAGAGGATAACAACAAACAGGGTTC
AAGCGGCCATTTCGGCAGACTTTACGCTCAGGCGGCTGATGCTCCTCCGG
CGCTGCGACGTCACGGTTCGATCGTTCCTCCGCCAGAAACAAGGGAAAGA
CAGCGAAGCGGCGGAGATGCCCACAGAGTTGAAGAAGAAGCAGAAGCAGC
AGCAGCAGATGACCTTTGCTGGTGCGTTGCTGCTCGGTCACGGACCACGA
CGACTTGAGCGTGTCGCACACCCGTCTCCACTGCGACAGACGAAACGAGA
TTCTCTGAAGGACGAACCGGACCGGATCACGGTGGACGACGCGCTAGCGG
CGCCGAGAAATGTAGCGTGGCAGCACCTTCGCAAGATTACAGAGAAGAAG
CAGAAGCAGCAGCAGCAGATGACCTTTGCTGGTGCGTTGCTGCTCGGTCA
CGGACCACGACGACTTGAGCGTGTCGCACACCCGTCTCCACTGCGACAGA
CGAAACGAGATTCTCTGAAGGACGAACCGGACCGGATCACGGTGGACGAC
GCGCTAGCGGCGCCGAGAAATGTAGCGTGGCAGCACCTTCGCAAGATTAC
AGAGAGCTCCGACGAAGCGAAGACATCCACAAAGATGGCGACGATCGCAG
AAGTGCCCCACCGCGGCGGGCGCGTTGATGCGGCGCGCGCGGGTCCTGCG
ATGCCCGCGTGGACGACACGAAAGGAATTCGACGGGGCTAGAGGTAGAGG
TGGTGGTCGAAGTGGCGGTAGAGGTAGAGGTGGTGGTCAAGGTGGCGGTA
GAGGTAGAGGTGGTGGCCAAGGTGGCGGTCGATGGCGGGGTGGAGGTCGA
AAAGGAGGCGGGGGAAGGGGGGGGCAGGGGGGGAGGGGTAATCATTGGGG
CAGCGGAGGGGGCGGCAGAGGTGGAGGTGAAGGCAACGAAGGATACATGG
GAGGCGGGGAACACAAGAGGAAGTGGAGTGGGCATGGAGGTAGGCGACAA
GGATATTAGAGCTCCGACGAAGCGAAGACATCCACAAAGATGGCGACGAT
CGCAGAAGTGCCCCACCGCGGCGGGCGCGTTGATGCGGCGCGCGCGGGTC
CTGCGATGCCCGCGTGGACGACACGAAAGGAATTCGACGGGGCTAGAGGT
AGAGGTGGTGGTCGAAGTGGCGGTAGAGGTAGAGGTGGTGGTCAAGGTGG
CGGTAGAGGTAGAGGTGGTGGCCAAGGTGGCGGTCGATGGCGGGGTGGAG
GTCGAAAAGGAGGCGGGGGAAGGGGGGGGCAGGGGGGGAGGGGTAATCAT
TGGGGCAGCGGAGGGGGCGGCAGAGGTGGAGGTGAAGGCAACGAAGGATA
CATGGGAGGCGGGGAACACAAGAGGAAGTGGAGTGGGCATGGAGGTAGGC
GACAAGGATATTAG
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