mRNA_H-elongata_contig80271.15679.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80271.15679.1
Unique NamemRNA_H-elongata_contig80271.15679.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5JV22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV22_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 5.530e-54
Identity = 85/147 (57.82%), Postives = 107/147 (72.79%), Query Frame = 1
Query:    1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGPV 441
            +L +P  ++TDCGFVV G  AL VL YRLA+PC +K +RLVFGLS SCI E FN++LH++  +WGYLL L + R+   L EFAEA+  SG P+T  WGF+DGTVR +  RP   QR+ YNGHKR HA KFQ  +TPDG+ V L+GPV
Sbjct:   68 LLLIPAFIRTDCGFVVSGREALWVLQYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIA-RPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPV 213          
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5KRJ1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ1_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.290e-53
Identity = 85/147 (57.82%), Postives = 109/147 (74.15%), Query Frame = 1
Query:    1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGPV 441
            +L +P  ++TDCGFVV G  AL VLLYRLA+PC +K +RLVFG+S SCI E FN++LH++  +WGYLL L + R+   L EFAEA+  SG P+T  WGF+DGTVR +  RP   QR++YNGHKR HA KFQ  +TPDG+ V L+GPV
Sbjct:   69 LLLIPAFIRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGMSESCICEVFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIA-RPKHWQRLLYNGHKRKHAMKFQGVITPDGLFVDLWGPV 214          
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: D7G148_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G148_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 4.420e-53
Identity = 82/147 (55.78%), Postives = 108/147 (73.47%), Query Frame = 1
Query:    1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGPV 441
            +L +P  ++TDCGFVV G  AL VLLYRLA+PC +K +RLVFGLS SCI + FN++LH++  KWG+LL L ++R+   L EFAEA++ +  P+T  WGF+DGTVR +  RP   QR  YNGHKR HA KFQ  +TPDG+ V ++GPV
Sbjct:   63 LLLIPAFIRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICQTFNWMLHFLEFKWGWLLSLDVERLKPRLVEFAEAIYNADCPLTHCWGFIDGTVRGIA-RPVRFQRWYYNGHKRKHAIKFQGVITPDGLFVDMWGPV 208          
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5JYJ9_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ9_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 8.480e-53
Identity = 83/145 (57.24%), Postives = 106/145 (73.10%), Query Frame = 1
Query:    1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYG 435
            +L VP +++T+CGFVV G  AL VLLYRLA+PC +K +RLVFGLS SCI E FN++LH++  KWG+LL L + R+V  L  FAEAV+  G P+T  W F+DGTVR +  RP  +QR  YNG+KR HA KFQ  +TPDG+ V LYG
Sbjct:   64 LLMVPAIIRTECGFVVGGREALCVLLYRLAFPCRLKDMRLVFGLSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIA-RPIRNQRFFYNGYKRKHAIKFQGVVTPDGLFVDLYG 207          
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.520e-52
Identity = 85/147 (57.82%), Postives = 107/147 (72.79%), Query Frame = 1
Query:    1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGPV 441
            +L +P  ++TDC FVV G  AL VLLYRLA+PC +K +RLVFGLS SCI E FN++LH++  +WGYLL L + R+   L EFAEA+  SG P+T  WGF+DGTVR +  RP   QR+ YNGHKR HA KFQ  +TPDG+ V L+GPV
Sbjct:   44 LLLIPAFIRTDCEFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIA-RPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPV 189          
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: D8LL85_ECTSI (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LL85_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 2.540e-52
Identity = 82/147 (55.78%), Postives = 108/147 (73.47%), Query Frame = 1
Query:    1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGPV 441
            +L +P  ++TDCGF V G  AL VLLYRLA+PC +K +RLVFGLS SCI+E FN++LH++  KWG+LL L ++R+   L EFAEA++ +  P+T  WGF+DGTVR +  RP   QR  YNGHKR HA KFQ  +TPDG+ V ++GPV
Sbjct:   63 LLLIPAFIRTDCGFAVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCISETFNWMLHFLEFKWGWLLSLDVERLKPRLVEFAEAIYNADCPLTHCWGFIDGTVRGIA-RPVRFQRWYYNGHKRKHAIKFQGVITPDGLFVDMWGPV 208          
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5L0K5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K5_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 5.850e-51
Identity = 82/145 (56.55%), Postives = 105/145 (72.41%), Query Frame = 1
Query:    1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYG 435
            +L VP +++TDCGFVV G  AL VLLYRLA+PC ++ +RLVFG S SCI E FN++LH++  KWG+LL L + R+V  L  FAEAV+  G P+T  W F+DGTVR +  RP  +QR  YNG+KR HA KFQ  +TPDG+ V LYG
Sbjct:  115 LLMVPAIIRTDCGFVVGGREALCVLLYRLAFPCRLEDMRLVFGQSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIA-RPIRNQRFFYNGYKRKHAIKFQGVVTPDGLFVDLYG 258          
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5K9A6_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A6_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.760e-50
Identity = 82/147 (55.78%), Postives = 108/147 (73.47%), Query Frame = 1
Query:    1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGPV 441
            +L +P  ++TDC F+V G  AL VLLYRLA+PC +K +RLVFGLS SCI E FN++LH++  KWG+LL   ++R+   L EFAEA++ +G P+T+ WGF+DGTVR +  RP   QR  YNGHKR HA KFQ  +TPDG+ V L+GPV
Sbjct:  189 LLLIPAFIRTDCVFIVGGREALCVLLYRLAFPCRLKDMRLVFGLSESCICETFNWMLHFLDPKWGWLLSDDVERLKPRLVEFAEAIYNAGCPLTQCWGFIDGTVRGIA-RPIRFQRWYYNGHKRKHAIKFQGVVTPDGLFVDLWGPV 334          
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 4.910e-48
Identity = 80/144 (55.56%), Postives = 104/144 (72.22%), Query Frame = 1
Query:    1 MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLY 432
            +L VP +++T+CGFVV G  AL VLLYRLA+PC +K +RL FGLS SCI E FN++LH++  KWG+LL L + R+V  L  FAEAV+  G P+T  W F+DGTVR +  RP  ++R  YNG+KR HA KFQ  +TPDG+ V LY
Sbjct:  133 LLMVPAIIRTECGFVVGGREALCVLLYRLAFPCCLKDMRLDFGLSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIA-RPIRNKRFFYNGYKRKHAIKFQGVVTPDGLFVDLY 275          
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Match: D7G2E5_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2E5_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.070e-45
Identity = 73/145 (50.34%), Postives = 99/145 (68.28%), Query Frame = 1
Query:    4 LGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCINERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFVDGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGP 438
            L VP +++TDCG+V+ G  AL VLLYRLA+PC  K +RL+F  S SC+ E FN++LH+++  WG +L L + R+V  L  FAE +   G P+   W F+DGTVR +C R    QR  +NGHKRYHA K Q  +TPDG++V L+GP
Sbjct:   57 LCVPDMIRTDCGYVIAGRTALCVLLYRLAFPCRYKDMRLIFHRSDSCLCETFNYMLHFMNETWGSMLTLDLGRLVPRLDFFAERLQTWGCPLPNCWAFIDGTVRAIC-RTIREQRAFFNGHKRYHAIKLQSVVTPDGIMVDLFGP 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80271.15679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV22_9PHAE5.530e-5457.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRJ1_9PHAE1.290e-5357.82DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7G148_ECTSI4.420e-5355.78DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JYJ9_9PHAE8.480e-5357.24DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KB08_9PHAE1.520e-5257.82DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D8LL85_ECTSI2.540e-5255.78DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5L0K5_9PHAE5.850e-5156.55DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K9A6_9PHAE1.760e-5055.78DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JS57_9PHAE4.910e-4855.56DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
D7G2E5_ECTSI1.070e-4550.34DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80271contigH-elongata_contig80271:990..1656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue3e-43
Seed eggNOG ortholog2880.D7G105
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2AWDH@1,2RZYI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size441
Cds size441
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931208.3823314-CDS-H-elongata_contig80271:989..13071622931208.3823314-CDS-H-elongata_contig80271:989..1307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80271 990..1307 +
1691679742.1942685-CDS-H-elongata_contig80271:989..13071691679742.1942685-CDS-H-elongata_contig80271:989..1307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80271 990..1307 +
1622931208.3988085-CDS-H-elongata_contig80271:1533..16561622931208.3988085-CDS-H-elongata_contig80271:1533..1656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80271 1534..1656 +
1691679742.2068756-CDS-H-elongata_contig80271:1533..16561691679742.2068756-CDS-H-elongata_contig80271:1533..1656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80271 1534..1656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80271.15679.1prot_H-elongata_contig80271.15679.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80271 990..1656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80271.15679.1

>prot_H-elongata_contig80271.15679.1 ID=prot_H-elongata_contig80271.15679.1|Name=mRNA_H-elongata_contig80271.15679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
MLGVPRVVKTDCGFVVDGICALTVLLYRLAYPCTMKHVRLVFGLSPSCIN
ERFNFVLHWVHSKWGYLLKLGIDRIVYLLPEFAEAVHASGAPMTRVWGFV
DGTVRPLCNRPTLHQRVMYNGHKRYHAFKFQETLTPDGVIVSLYGPV
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mRNA from alignment at H-elongata_contig80271:990..1656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80271.15679.1 ID=mRNA_H-elongata_contig80271.15679.1|Name=mRNA_H-elongata_contig80271.15679.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=667bp|location=Sequence derived from alignment at H-elongata_contig80271:990..1656+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGGGGTACCGAGAGTCGTCAAGACGGACTGCGGTTTCGTTGTTGA TGGGATATGTGCTTTGACCGTTCTTCTCTACAGACTGGCGTATCCGTGTA CTATGAAACACGTACGACTCGTGTTTGGCCTAAGTCCTTCATGCATTAAC GAGAGATTCAATTTCGTGCTTCACTGGGTCCACTCTAAATGGGGATATCT GCTGAAGCTGGGCATCGATCGGATTGTCTATCTGCTGCCTGAGTTTGCAG AGGCGGTTCATGCTTCAGGTGCTCCGATGACTCGCGTGTGGGGTTTCGTT GACGGCACCGTTCGCCCGGTCGCCAGGTGGGCAACCGGAGGGTTCCGAGT GGATTTGAGTATCTTACTTCTACTACTGACGAATATTGATTACGTAGCCT ATCATGTGCCGTCTTTTTACTATAAAGAATAACAAACCCAACAAGAGATG TGCGACAAATTTGAGATTACCAAGTAATATCTGCGACCGAACTCATCCAA CTTCTCCATCCTCGACTTCCTCCTGCTTTCGCTTTCCAACCGAGCTATGC AATAGGCCCACGCTTCACCAGAGAGTGATGTATAACGGTCACAAGAGATA CCATGCCTTCAAGTTTCAAGAAACTCTCACACCGGATGGTGTGATTGTTA GTCTGTATGGACCCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig80271:990..1656+

>mRNA_H-elongata_contig80271.15679.1 ID=mRNA_H-elongata_contig80271.15679.1|Name=mRNA_H-elongata_contig80271.15679.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig80271:990..1656+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGGGGTACCGAGAGTCGTCAAGACGGACTGCGGTTTCGTTGTTGA
TGGGATATGTGCTTTGACCGTTCTTCTCTACAGACTGGCGTATCCGTGTA
CTATGAAACACGTACGACTCGTGTTTGGCCTAAGTCCTTCATGCATTAAC
GAGAGATTCAATTTCGTGCTTCACTGGGTCCACTCTAAATGGGGATATCT
GCTGAAGCTGGGCATCGATCGGATTGTCTATCTGCTGCCTGAGTTTGCAG
AGGCGGTTCATGCTTCAGGTGCTCCGATGACTCGCGTGTGGGGTTTCGTT
GACGGCACCGTTCGCCCGATGCTGGGGGTACCGAGAGTCGTCAAGACGGA
CTGCGGTTTCGTTGTTGATGGGATATGTGCTTTGACCGTTCTTCTCTACA
GACTGGCGTATCCGTGTACTATGAAACACGTACGACTCGTGTTTGGCCTA
AGTCCTTCATGCATTAACGAGAGATTCAATTTCGTGCTTCACTGGGTCCA
CTCTAAATGGGGATATCTGCTGAAGCTGGGCATCGATCGGATTGTCTATC
TGCTGCCTGAGTTTGCAGAGGCGGTTCATGCTTCAGGTGCTCCGATGACT
CGCGTGTGGGGTTTCGTTGACGGCACCGTTCGCCCGCTATGCAATAGGCC
CACGCTTCACCAGAGAGTGATGTATAACGGTCACAAGAGATACCATGCCT
TCAAGTTTCAAGAAACTCTCACACCGGATGGTGTGATTGTTAGTCTGTAT
GGACCCGTCCTATGCAATAGGCCCACGCTTCACCAGAGAGTGATGTATAA
CGGTCACAAGAGATACCATGCCTTCAAGTTTCAAGAAACTCTCACACCGG
ATGGTGTGATTGTTAGTCTGTATGGACCCGTC
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