mRNA_H-elongata_contig8025.15678.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8025.15678.1
Unique NamemRNA_H-elongata_contig8025.15678.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8025.15678.1 vs. uniprot
Match: D7FHG3_ECTSI (40S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG3_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 5.350e-101
Identity = 154/178 (86.52%), Postives = 162/178 (91.01%), Query Frame = 1 
Query:    1 MGRPAAMTKLGHKRVHPVRCRGGNMKFRALRLDTGNFSWGTEVRTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVAVGVKKGKKTPPKDEEEASKSDHVKRKLVKRQADRKLDSLLDEQFASGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKKKSK 534
            MGRPAA TKLGHKRVHPVRCRGGNMK+RALRLD+GNFSWGTEV T KTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFK WYE+HYGV +G+KKGKK  P +EE  +KSDHVKRKL KRQ DR L +LLDEQ ASGRFLACISSRPGQ GRCDGYILEGKELEFYQKMLAKKKSK
Sbjct:   29 MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVVIGLKKGKKAAPVEEEAVAKSDHVKRKLAKRQTDRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK 206
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BLAST of mRNA_H-elongata_contig8025.15678.1 vs. uniprot
Match: A0A836CLT8_9STRA (40S ribosomal protein S8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT8_9STRA)

HSP 1 Score: 268 bits (685), Expect = 4.620e-85
Identity = 135/183 (73.77%), Postives = 154/183 (84.15%), Query Frame = 1 
Query:    1 MGRPAAMTKLGHKRVHPVRCRGGNMKFRALRLDTGNFSWGTEVRTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVAVGVKKGK-----KTPPKDEEEASKSDHVKRKLVKRQADRKLDSLLDEQFASGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKKKSK 534
            +GRPAA TK+G  R+  VRCRGGN+KFRALRL+TGN+SWGTEV T KTRILDVVYNASNNELVRTKTLVK A+V +DA PF++WYE+HYG+A+GVKKGK     K     +EEA KSDHV+RKL  RQ  R LD+LLDEQFASGR LACISSRPGQ GRCDGYILEGKELEFYQK+L++KK K
Sbjct:   29 LGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGK 211
[Close]
BLAST of mRNA_H-elongata_contig8025.15678.1 vs. uniprot
Match: A0A7S2USH6_9STRA (40S ribosomal protein S8 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USH6_9STRA)

HSP 1 Score: 266 bits (681), Expect = 3.510e-84
Identity = 133/179 (74.30%), Postives = 149/179 (83.24%), Query Frame = 1 
Query:    1 MGRPAAMTKLGHKRVHPVRCRGGNMKFRALRLDTGNFSWGTEVRTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVAVGVKKGKKTPPKDE---EEASKSDHVKRKLVKRQADRKLDSLLDEQFASGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKKK 528
            MGRPAA TKLG KRVHPVRC GGNMK+RA+RL+ G +SWGTE  + K RILDVVYNASNNELVRTKTLVKNA+V++DAHPFK WYE+HYGV +G KKGK+ P KDE   E+A KS HV+RK+ KRQ DR L   LD+QF  GR LACISSRPGQ GR DGYILEGKELEFYQKMLA+KK
Sbjct:   49 MGRPAANTKLGTKRVHPVRCMGGNMKYRAMRLEAGTYSWGTEAISRKARILDVVYNASNNELVRTKTLVKNAVVLIDAHPFKAWYEAHYGVVIGKKKGKRMPKKDEADDEDAKKSSHVQRKIAKRQKDRTLMQNLDDQFVGGRLLACISSRPGQSGRADGYILEGKELEFYQKMLARKK 227
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BLAST of mRNA_H-elongata_contig8025.15678.1 vs. uniprot
Match: A0A7S1Z304_TRICV (40S ribosomal protein S8 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z304_TRICV)

HSP 1 Score: 256 bits (654), Expect = 1.530e-80
Identity = 128/175 (73.14%), Postives = 146/175 (83.43%), Query Frame = 1 
Query:    1 MGRPAAMTKLGHKRVHPVRCRGGNMKFRALRLDTGNFSWGTEVRTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVAVGVKKGKKTPPKDEEEASKSDHVKRKLVKRQADRKLDSLLDEQFASGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKK 525
            +GRPAAMTK+G KRVH VRCRGGN+KFRALRLD+GNFSWGTEV T K RILDV YNASNNELVRTKTLVK AIV++DAHPFK+WYE+HYGV +GVKKG+K    DEE   KS+ V+RKL  RQ +R L+  LD QFASGR LA I+SRPGQCGRCDG +LEG EL FYQ+ +AKK
Sbjct:   29 LGRPAAMTKIGEKRVHEVRCRGGNLKFRALRLDSGNFSWGTEVCTRKVRILDVTYNASNNELVRTKTLVKGAIVLIDAHPFKEWYEAHYGVKIGVKKGQKAHA-DEEAPKKSERVQRKLAARQKNRTLEQPLDHQFASGRLLAKITSRPGQCGRCDGVVLEGAELHFYQRQMAKK 202
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BLAST of mRNA_H-elongata_contig8025.15678.1 vs. uniprot
Match: A0A812SFI7_SYMMI (40S ribosomal protein S8 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SFI7_SYMMI)

HSP 1 Score: 254 bits (650), Expect = 7.500e-80
Identity = 127/176 (72.16%), Postives = 144/176 (81.82%), Query Frame = 1 
Query:    1 MGRPAAMTKLGHKRVHPVRCRGGNMKFRALRLDTGNFSWGTEVRTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVAVGVKKGKKTPPKDEEEASKSDHVKRKLVKRQADRKLDSLLDEQFASGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKKK 528
            +GRP A TKLG  R+H VRCRGGN+KFRA+RLDTGNFSWG+EV T KTR+LDVVYNASNNELVRTKTLVKN+I+ VDA PF+ WYE HYGV VGVKK KKT  + E+   KS  ++RKL +RQ  R LD  LD+ F+SGR LACISSRPGQ GRCDGYILEGKEL+FY KML KKK
Sbjct:   29 LGRPPANTKLGASRIHTVRCRGGNLKFRAMRLDTGNFSWGSEVCTRKTRVLDVVYNASNNELVRTKTLVKNSIIQVDATPFRAWYEQHYGVKVGVKKAKKTAAEGEDTEKKSHSLQRKLAERQKTRTLDPALDDGFSSGRLLACISSRPGQSGRCDGYILEGKELDFYSKMLKKKK 204
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BLAST of mRNA_H-elongata_contig8025.15678.1 vs. uniprot
Match: A0A7S2JRG2_9STRA (40S ribosomal protein S8 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRG2_9STRA)

HSP 1 Score: 254 bits (649), Expect = 8.380e-80
Identity = 131/175 (74.86%), Postives = 142/175 (81.14%), Query Frame = 1 
Query:    1 MGRPAAMTKLGHKRVHPVRCRGGNMKFRALRLDTGNFSWGTEVRTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVAVGVKKGKKTPPKDEEEASKSDHVKRKLVKRQADRKLDSLLDEQFASGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKK 525
            MGRPAAMTK+G KRV  VRCRGGNMK+RALRLDTGNFSWGTEV T K RILDV YNASNNELVRTKTLVK AIV+VD HPFK WYESHYGV  G++  K  PP DE+EA KS+HV+RKL  RQ  R L+  LD Q ASGRFLA I+SRPGQ GRCDG ILEG EL FYQKM+ KK
Sbjct:   29 MGRPAAMTKIGEKRVREVRCRGGNMKYRALRLDTGNFSWGTEVCTRKVRILDVTYNASNNELVRTKTLVKGAIVLVDCHPFKTWYESHYGVKTGLRGAK--PPVDEDEAKKSNHVQRKLAARQKTRSLEPTLDSQLASGRFLAKITSRPGQSGRCDGVILEGPELAFYQKMMHKK 201
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BLAST of mRNA_H-elongata_contig8025.15678.1 vs. uniprot
Match: B7FP80_PHATC (40S ribosomal protein S8 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FP80_PHATC)

HSP 1 Score: 251 bits (640), Expect = 2.160e-78
Identity = 126/177 (71.19%), Postives = 144/177 (81.36%), Query Frame = 1 
Query:    1 MGRPAAMTKLGHKRVHPVRCRGGNMKFRALRLDTGNFSWGTEVRTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVAVGVKK--GKKTPPKDEEEASKSDHVKRKLVKRQADRKLDSLLDEQFASGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKK 525
            +GRPAAMTK+G  R+HPVRCRGGNMKFRALRLD+GNFSWGTEV T K R+LDV YNASNNELVRTKTLVK AIV++DAHPFK WY+SHYGV +G+KK  G+       +   KS  V++KL  RQA+R LDS+LD QFASGR LA I+SRPGQ GRCDGYILEG EL FYQK +AKK
Sbjct:   29 LGRPAAMTKIGEPRIHPVRCRGGNMKFRALRLDSGNFSWGTEVCTRKVRVLDVTYNASNNELVRTKTLVKGAIVLIDAHPFKNWYDSHYGVTIGLKKTGGEDRTQPSVDLTEKSTQVQKKLKSRQANRSLDSVLDHQFASGRLLAKITSRPGQTGRCDGYILEGAELAFYQKQMAKK 205
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BLAST of mRNA_H-elongata_contig8025.15678.1 vs. uniprot
Match: A0A7M5V503_9CNID (40S ribosomal protein S8 n=2 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5V503_9CNID)

HSP 1 Score: 251 bits (640), Expect = 2.390e-78
Identity = 124/180 (68.89%), Postives = 147/180 (81.67%), Query Frame = 1 
Query:    1 MGRPAAMTKLGHKRVHPVRCRGGNMKFRALRLDTGNFSWGTEVRTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVAVGVKKGKKTPPKDEEEASK--SDHVKRKLVKRQADRKLDSLLDEQFASGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKKKSK 534
            +GRPAA TK+G KR+HPVRCRGGN+KFRA+RLD GN+SWG+E  T KTR+LDVVYNASNNELVRTKTLVKNAI+++DA PFK+W+E+HYGVAVG KKG K P  +E+  +K  S H K K+  R+ D K+D  L+EQF SGR +ACISSRPGQ GRCDGYILEGKEL+FY K L  KK K
Sbjct:   29 LGRPAANTKIGVKRIHPVRCRGGNLKFRAMRLDAGNYSWGSESITRKTRVLDVVYNASNNELVRTKTLVKNAIILIDATPFKQWFEAHYGVAVGRKKGHKIPEGEEDPLNKTRSKHAKAKIAARKPDSKIDHHLEEQFTSGRVMACISSRPGQSGRCDGYILEGKELDFYLKKLKTKKGK 208
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BLAST of mRNA_H-elongata_contig8025.15678.1 vs. uniprot
Match: A0A485KRP7_9STRA (40S ribosomal protein S8 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRP7_9STRA)

HSP 1 Score: 246 bits (627), Expect = 7.620e-77
Identity = 127/178 (71.35%), Postives = 141/178 (79.21%), Query Frame = 1 
Query:    1 MGRPAAMTKLGHKRVHPVRCRGGNMKFRALRLDTGNFSWGTEVRTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVAVGVKKGKKTPPKDEEEASKSDHVKRKLVKRQADRKLDSLLDEQFASGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKKKSK 534
            MGR  A TKLG KRV+PVR RGGNMKFRALRLDTGNFSWGTE    KTR+L V+YNASNNELVRT TLVKNAI+ +DA PF++WYE+HYGV +GVKK  +     EEE  +S HV+RKL  RQ  R+LD  LDEQF  GR LACISSRPGQ GRCDGYILEGKELEFYQ+ LA KK K
Sbjct:    1 MGRQPANTKLGAKRVNPVRVRGGNMKFRALRLDTGNFSWGTEAIAHKTRVLIVLYNASNNELVRTNTLVKNAIIQIDATPFRQWYEAHYGVKIGVKKSAEADK--EEEVKQSSHVQRKLAARQRTRELDPRLDEQFQQGRLLACISSRPGQSGRCDGYILEGKELEFYQRKLATKKQK 176
[Close]
BLAST of mRNA_H-elongata_contig8025.15678.1 vs. uniprot
Match: A0A5D6XRG2_9STRA (40S ribosomal protein S8 n=2 Tax=Pythiaceae TaxID=4782 RepID=A0A5D6XRG2_9STRA)

HSP 1 Score: 246 bits (629), Expect = 1.230e-76
Identity = 130/178 (73.03%), Postives = 143/178 (80.34%), Query Frame = 1 
Query:    1 MGRPAAMTKLGHKRVHPVRCRGGNMKFRALRLDTGNFSWGTEVRTCKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVAVGVKKGKKTPPKDEEEASKSDHVKRKLVKRQADRKLDSLLDEQFASGRFLACISSRPGQCGRCDGYILEGKELEFYQKMLAKKKSK 534
            +GR  A TKL  KRVH VR RGG++KFRALRLDTGNFSWGTEV   KTRILDVVYNASNNELVRTKTLVKN++V+VDA PF++WYE+HYGV +GVKK  +    +EEE  KSDHV RKL  RQ  R LD  LDEQF SGR LA ISSRPGQ GR DGYILEGKELEFYQ+ LA KKSK
Sbjct:   36 LGRQPANTKLAPKRVHTVRVRGGHIKFRALRLDTGNFSWGTEVSARKTRILDVVYNASNNELVRTKTLVKNSVVLVDATPFRQWYEAHYGVKIGVKKNAEKV--EEEEVKKSDHVLRKLANRQRTRVLDQKLDEQFMSGRLLAVISSRPGQSGRADGYILEGKELEFYQRKLATKKSK 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8025.15678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG3_ECTSI5.350e-10186.5240S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CLT8_9STRA4.620e-8573.7740S ribosomal protein S8 n=1 Tax=Tribonema minus T... [more]
A0A7S2USH6_9STRA3.510e-8474.3040S ribosomal protein S8 n=1 Tax=Fibrocapsa japoni... [more]
A0A7S1Z304_TRICV1.530e-8073.1440S ribosomal protein S8 n=1 Tax=Trieres chinensis... [more]
A0A812SFI7_SYMMI7.500e-8072.1640S ribosomal protein S8 n=1 Tax=Symbiodinium micr... [more]
A0A7S2JRG2_9STRA8.380e-8074.8640S ribosomal protein S8 n=1 Tax=Leptocylindrus da... [more]
B7FP80_PHATC2.160e-7871.1940S ribosomal protein S8 n=2 Tax=Phaeodactylum tri... [more]
A0A7M5V503_9CNID2.390e-7868.8940S ribosomal protein S8 n=2 Tax=Clytia hemisphaer... [more]
A0A485KRP7_9STRA7.620e-7771.3540S ribosomal protein S8 n=1 Tax=Aphanomyces stell... [more]
A0A5D6XRG2_9STRA1.230e-7673.0340S ribosomal protein S8 n=2 Tax=Pythiaceae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8025contigH-elongata_contig8025:3272..8242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue1.4e-82
Seed eggNOG ortholog2880.D7FHG3
Preferred nameRPS8
KEGG koko:K02995
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000313,GO:0000462,GO:0000956,GO:0002164,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030097,GO:0030312,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035166,GO:0035167,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043009,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043253,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2007@1,KOG3283@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons5
Model size1315
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8025.15678.1prot_H-elongata_contig8025.15678.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8025 3272..7464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931208.2564747-CDS-H-elongata_contig8025:3271..33981622931208.2564747-CDS-H-elongata_contig8025:3271..3398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8025 3272..3398 +
1691679742.1282935-CDS-H-elongata_contig8025:3271..33981691679742.1282935-CDS-H-elongata_contig8025:3271..3398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8025 3272..3398 +
1622931208.2791698-CDS-H-elongata_contig8025:3719..38171622931208.2791698-CDS-H-elongata_contig8025:3719..3817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8025 3720..3817 +
1691679742.1406605-CDS-H-elongata_contig8025:3719..38171691679742.1406605-CDS-H-elongata_contig8025:3719..3817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8025 3720..3817 +
1622931208.2922087-CDS-H-elongata_contig8025:4219..43181622931208.2922087-CDS-H-elongata_contig8025:4219..4318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8025 4220..4318 +
1691679742.1495354-CDS-H-elongata_contig8025:4219..43181691679742.1495354-CDS-H-elongata_contig8025:4219..4318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8025 4220..4318 +
1622931208.308864-CDS-H-elongata_contig8025:6006..61351622931208.308864-CDS-H-elongata_contig8025:6006..6135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8025 6007..6135 +
1691679742.1589072-CDS-H-elongata_contig8025:6006..61351691679742.1589072-CDS-H-elongata_contig8025:6006..6135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8025 6007..6135 +
1622931208.3233607-CDS-H-elongata_contig8025:7380..74641622931208.3233607-CDS-H-elongata_contig8025:7380..7464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8025 7381..7464 +
1691679742.173314-CDS-H-elongata_contig8025:7380..74641691679742.173314-CDS-H-elongata_contig8025:7380..7464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8025 7381..7464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931208.3370838-UTR-H-elongata_contig8025:7464..82421622931208.3370838-UTR-H-elongata_contig8025:7464..8242Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8025 7465..8242 +
1691679742.1828423-UTR-H-elongata_contig8025:7464..82421691679742.1828423-UTR-H-elongata_contig8025:7464..8242Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8025 7465..8242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8025.15678.1

>prot_H-elongata_contig8025.15678.1 ID=prot_H-elongata_contig8025.15678.1|Name=mRNA_H-elongata_contig8025.15678.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
MGRPAAMTKLGHKRVHPVRCRGGNMKFRALRLDTGNFSWGTEVRTCKTRI
LDVVYNASNNELVRTKTLVKNAIVVVDAHPFKKWYESHYGVAVGVKKGKK
TPPKDEEEASKSDHVKRKLVKRQADRKLDSLLDEQFASGRFLACISSRPG
QCGRCDGYILEGKELEFYQKMLAKKKSK*
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mRNA from alignment at H-elongata_contig8025:3272..8242+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8025.15678.1 ID=mRNA_H-elongata_contig8025.15678.1|Name=mRNA_H-elongata_contig8025.15678.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4971bp|location=Sequence derived from alignment at H-elongata_contig8025:3272..8242+ (Himanthalia elongata Himel1 dioecious)
ATGGGTCGCCCGGCCGCTATGACGAAATTAGGCCACAAGCGCGTGCACCC
TGTGCGATGCCGCGGTGGCAACATGAAATTCCGCGCCCTGAGGCTCGACA
CAGGCAACTTCAGCTGGGGCACCGAGGGTGGGTTAGCTCCTTAGGGAGTT
CCCATTTTATTTTCGAGTAGAGATTACTCGCGTGTTTTGTTTTTCACCTC
TTGCCGGCGCCTACAAAACTCGAGGTTAATATCTCACGGCGCTCCGCCCG
CCACGAGCCACATCTCGACAGGCTGTTCCGCAAATGCCAACTCAAGTAGA
TTACTAGGTATACTGAACAACATATTTTCAGCCTTCGAGATACTGTCGGC
AGTGCACTGTAACCCGATCCAAATCGGTGCCAGGCGTGACTGACCTCCCC
CCACCACCTACCCCCCTCTGTCCTCCCCCCCTTTTTGTCCTACCTCAGTC
CGCACCTGCAAGACCCGTATCCTTGACGTGGTTTACAACGCTAGCAACAA
CGAGCTGGTCCGCACCAAGACCCTCGTGAAAAACGCCATCGTGGTGGTAA
GTTGCGCAACTCTTTAGCATCCGACCTACTTACTAGCCCAATTTGAAGAG
GGATTATAGTGGTAAAGGTTGGTTGTTTTGTCGATAAGGATTAAAAAATG
TCATCAGCCTCACTCTTTCACGTATTTTCGTAGAAGCGTAAGAGCAAACG
AAGGAAAGAAGCCGATGCTGTCCTCTGAAAAAGGGCCTAGTGTATATTTC
GCATGACTGCAATCATGCTCTAGAAGTTTTTCGATAGTGTCAAAAGGCGT
TTCCAATAATGAGGCGTTAGAGCTGGTGTAAACTAACCGTGACCAAGCCC
CCCCCCCCCCACCCACCCGCGTCCAAAACCCTCGTAACTCGCCCTGCCTT
CCGGTGGTGTATCTATTGCGCTCCTTTTTTTTCGTCGCCTCCGGGTAGGT
TGACGCTCACCCTTTTAAGAAGTGGTACGAGAGCCACTATGGTGTCGCTG
TCGGCGTTAAGAAGGGAAAGAAGACCCCACCCAAGGACGAGGAGGAGGTG
AGATGTGACCCGTTTTTATGAAAGGGGAGGGAGCCATGAGGGCAGCATCC
ATGTTCTCGCTTCACAAGCCTCGGTTTGTGCTGTCTTAATGTGTGGGTGA
CGAGGGTGTCGTTATCGCCCGCCCCGCTCCGTTTTCCCAAGGAGGCGTGG
TCAACAAATCAATGGAGGCATGAAGGTTATAGTACACGCCCTTTCGATGT
CTAGTTTGTCAAGAGGATTTTAAAAATGTAGAGTTAAAAGCCGATTAGAT
GTTGATTAGAAATAGAGCCACGTAGATCAACCGCAGTAGATCACATACAC
GGGCCCAAGATAAAAGATAAAGCGTGGGAAGGAAAGTTGCACCCTAAACT
TGCAAACAGGCGTTATCTTGATACAGTAAAGGAACAACACCATTTTGAAG
AGTGTTAACGTCCCACCTACAGAAGACTCTGTAAAAATAAAATATATTAT
AAATAAATAGCGCACAAGGCGTACAGTAGCACGAGCAGAACTGGGTGTTG
TTCGCTGCGGACGGGAAAAGGGCGGGGGGGGGGAGGAAGTGGAAAAAAAA
GTGGGGAGGGCTAGAGTCCAGGAGTAGGAGTAGACATATCCATCGAGTTG
ACGAATGTAGCAAAAAGAGAAATAGTGGTGCACCTCGGAAGAAACGTTTG
TCCGCTACAAACCGAACGCCGCTACGGCGACTGCTGGTCCGCCTGCCTGC
TGGTGTCGGGTACTTCAGTAAACCAACATTCTAAAGAATACCAACACGAA
CGGGCAACTCACGTCACGCCCCACCCCCTTTAACGGATGGAGGGACATGG
ATTGGAGATTAATTTGAGGACTTTAGACGTCTGCCATCCGTGGACGGAGG
CCTAAGGAAAAAAGGACGAATGGGAAGACCGAAGTCGTCTCACCACGCGT
TAAAAGGATGTCGGTTGTGCCAAAAGAGGTACTGCGATAAATAAGGAGTC
CTCAGGAAGGGGCGAAACATTTGGAGGCAGCACGAAAAATATTTATGTAT
CCCCCCCTCCCCGTGTTTGTTTGCCAGGGTAAAAAATAATAATTTGGCCA
TCGCCAATAGATGACATGCACAAAAAAAAGTGCTCCGTTTTCGCCAGAGG
CCGCGTGGTCAAAGGTCCAAAGCATACTTTTGTATAAACTTGAGGACGAC
CCCTTTAGCACCCGCGGGAAACGTTTCAAAGCCTTTTGTAATTTTTTTAA
ACACGGAACATTATTTTTGAAGAGCGTCCCCAAATAGAAATCAATTAAAA
AACATTTTTTTCATACTTTTTTTCAGAGTGATTTAGTTTATGTCCAAGAC
TTGACATTATGTTTGCTGAGGGAGCAACGAAAATATGTCTGTGAAGTGGT
TAAGTTCGATTTAATTGACCCCCGAAAGAGGTATTGTTACTGCATTTTTC
GTCGTGTTTTTTTTTGTCAATGGGTCGCACGTCAAAGTCGGCTTGTTTCG
CCACATAGGCTTCCAAACTGATTATTTTTTCCTGTCTGTGTCGGTTACGT
ATCTTTTTTTTACCGCCTCGTGACCCACCCGGACGTCAACTTCCCTATCA
ATCGAAGTTGCTGTTGGTTTTTAATGATTCCACTTCTCCTGCGTACTCTC
CCTAATATCTAATATTTCCTTGTGCGTTTGTTCTTCTTTTTTTTCTGCCT
CTCCGGTCCTTTTGCCTTTGAAAATGTTTTAGGAGGCGTCCAAGTCCGAC
CACGTCAAGCGCAAACTCGTCAAACGCCAAGCAGACCGTAAGCTGGACTC
TCTCCTTGACGAGCAGTTCGCCTCTGGACGCTTCCTGGCGTGCATCTCCT
CACGTCCCGGACAGGTATTGTACTATTAATAGTATTGATCATGGTTCATG
TTCCTAGCAGTAAGTTTTCGTACGATTTTTTAGCTTCATTGCTTTAACTA
TAGCTTTTTACATGCCTCTTCTTGGAATAACGCCTGGTTTGTTGGTTTTC
GTTAAAATTTAGATTTAAGCATGTTCAAGTGTAAAGTTGTTCAATATTCA
AGGAAAGGTTGTTTTTAGAAAAATAAAATTGCAAACGTTCGTGTATCATT
GCAAGGTATCATCTATTTTACTGGGTGTTATTTTCCCTTTTAAGACCGTG
TTACAGCTGCCACCTGGCCGCGCGCGTAACGCCTCCGCGAGAAAAACCCG
TAGAGCGTGAGAAAAAAGACAAGGTGGTACCGGTCCTCAGGCGCTTCGCT
CACCTGGTCAATTAAACGGTGCTATGGTCTGAGAGTCTACTACAAGCTGG
GTCGACCAAAAAACACCTTGAGCGATAATCTCGCGATGCGAGGCTGAATG
TTTCGAATTTGATCCTGAAAGTTTTACAAGTGATTTGAAGCGCACTCGCC
AAGACCCCCAAGATTTGACCACGGCGTTTTTTTGTTGTTTTGTTGAATTA
TTGCCATCTGAAAAAACCCCTAGATTTTTAGTCGGCCGTAACTCGGCAAA
AAAAACGCCGTGGTAAAATTTATGGGGGTCTCGGTGAGTGCGCTCCAAAT
CACGTTTCAAAATTTTAGGATCAAATTCGAAAAACTCGACCGCACATCGC
GATATTTGCACCAAGATCGCTGTACAGTCAAACTAACATGCAAGTACAAG
AAAGGAATTTGGCCATAACTTTCGAACGACAGTAAACTATGAGATAGTAC
GACTACCATTCTTTTTTTCGAATCTTTACTTTTACAAATCCACATTTCAG
AGAAATCGGTCGACTTTTTTTGTATTGAAATTTCAGATTGAGCCACACTA
AAACCCGATACTAAAAAACGGCTTTCACGGCACGAATATGACAGATTTCT
AAGCTGAAGAGATGTGGACCAGCGCCTTGACGATCCGACCCGATCACGAC
GATATGGTCAGCTTGCCCTGATTCAATGCCGTTCAAAATATATGATCAGC
TCATTCTTTATGAGGTTATTGGTCGGCCCAGCCTGGACAGTCGGTTTATG
AAAGTGAAAATTATAGATATCATTGTCATAAACCGACCTTTCTCCCCTTT
CTGGAATATTGAGCTAATTTCATTATTTGTTATATAAATGCGGTCCTGCT
GTTGCGCAGTGCGGCCGCTGCGACGGATACATCCTGGAGGGCAAGGAGCT
GGAGTTTTACCAGAAAATGCTCGCCAAGAAGAAGTCTAAGTAAACGTCGT
TTTGAGAAACCTTGCTGTATGGCGGAGGTAGTTCGGTTCAGGGAGTGATT
GTTGATCGGTGACGGAACGGGGTATGGCGAAGGACGGAGCAGCGAAATGG
AAAGTACTGAGATAATGAATGTCTGGTGGAAGACAGATGGTGAAAGTCTC
TCTCGCTCGCTCTCTCTGGCCTTTAACTAACGCATTGTCTCAACGGCCGC
AGGATTGATTTGTCCCGACCGGTCGCTGCTTTGCGTTGCAGCACCCCGGT
CACCCTTCACCGAAGTGGCTTCCCTGATCATGTTTTCTCTTGTCAAATTT
ATCTGCCGTTCAAGGGCCTCGCTTACGTTACAGCCGTTGCGATCGATAAG
GTCTTAATTGTTCTTCTGGTTACAGTACTATTCTCCTGATTTTGCGGTAT
AACTCCCCGTTTTTCACCTCTGCCTTCCTCTCCCCCCTCTCGTTAAGATG
CTCGAAATTCCGTCCAGACATTAGGATAGCGGGGGTATTTCTCCATTTGG
GGGGGGGAGCTACCATGTCGAATAACCCCGCTCCTGCACGATCACAAGAA
ATGTTTTTAAATCTTTCGCTTTGAAAGATTTTGAAGCCGAAACGCCAGAA
TAGCTTCTCTTGCTGCACTTGTCACGAAAAGACTTAAGATCATCGAAACA
TGCCTCCACTTGTAATAATGGTAAAACCCCGTTTCAATATGTCAACGGTG
TGCGCACGTGTGGTTGATTTGAATTTGATTGATGATCAACACCCAGACCG
TGGTCGCAAGGTAGAAAAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig8025:3272..8242+

>mRNA_H-elongata_contig8025.15678.1 ID=mRNA_H-elongata_contig8025.15678.1|Name=mRNA_H-elongata_contig8025.15678.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig8025:3272..8242+ (Himanthalia elongata Himel1 dioecious)
ATGGGTCGCCCGGCCGCTATGACGAAATTAGGCCACAAGCGCGTGCACCC
TGTGCGATGCCGCGGTGGCAACATGAAATTCCGCGCCCTGAGGCTCGACA
CAGGCAACTTCAGCTGGGGCACCGAGGATGGGTCGCCCGGCCGCTATGAC
GAAATTAGGCCACAAGCGCGTGCACCCTGTGCGATGCCGCGGTGGCAACA
TGAAATTCCGCGCCCTGAGGCTCGACACAGGCAACTTCAGCTGGGGCACC
GAGGTCCGCACCTGCAAGACCCGTATCCTTGACGTGGTTTACAACGCTAG
CAACAACGAGCTGGTCCGCACCAAGACCCTCGTGAAAAACGCCATCGTGG
TGTCCGCACCTGCAAGACCCGTATCCTTGACGTGGTTTACAACGCTAGCA
ACAACGAGCTGGTCCGCACCAAGACCCTCGTGAAAAACGCCATCGTGGTG
GTTGACGCTCACCCTTTTAAGAAGTGGTACGAGAGCCACTATGGTGTCGC
TGTCGGCGTTAAGAAGGGAAAGAAGACCCCACCCAAGGACGAGGAGGAGG
TTGACGCTCACCCTTTTAAGAAGTGGTACGAGAGCCACTATGGTGTCGCT
GTCGGCGTTAAGAAGGGAAAGAAGACCCCACCCAAGGACGAGGAGGAGGC
GTCCAAGTCCGACCACGTCAAGCGCAAACTCGTCAAACGCCAAGCAGACC
GTAAGCTGGACTCTCTCCTTGACGAGCAGTTCGCCTCTGGACGCTTCCTG
GCGTGCATCTCCTCACGTCCCGGACAGGCGTCCAAGTCCGACCACGTCAA
GCGCAAACTCGTCAAACGCCAAGCAGACCGTAAGCTGGACTCTCTCCTTG
ACGAGCAGTTCGCCTCTGGACGCTTCCTGGCGTGCATCTCCTCACGTCCC
GGACAGTGCGGCCGCTGCGACGGATACATCCTGGAGGGCAAGGAGCTGGA
GTTTTACCAGAAAATGCTCGCCAAGAAGAAGTCTAAGTAATGCGGCCGCT
GCGACGGATACATCCTGGAGGGCAAGGAGCTGGAGTTTTACCAGAAAATG
CTCGCCAAGAAGAAGTCTAAGTAA
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