mRNA_H-elongata_contig80219.15676.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80219.15676.1
Unique NamemRNA_H-elongata_contig80219.15676.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80219.15676.1 vs. uniprot
Match: D7FKM0_ECTSI (HECT-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM0_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 3.430e-57
Identity = 95/107 (88.79%), Postives = 102/107 (95.33%), Query Frame = 1
Query:    1 GSGLKGRIQVTLLNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFMATEDQYLFPNPAAPMVSEEYLFHFEFLGRVLGKAVFEDILVEPQFSPVFLNKLLGRVS 321
            GS LKGRIQVT +NQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALF+AT+DQYLFPNPAA MV+++YLFHFEFLGRVL KAVFEDILVEPQFSPVFLNKLLGR +
Sbjct: 1055 GSFLKGRIQVTFMNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFVATQDQYLFPNPAASMVADDYLFHFEFLGRVLAKAVFEDILVEPQFSPVFLNKLLGRYN 1161          
BLAST of mRNA_H-elongata_contig80219.15676.1 vs. uniprot
Match: A0A7S2CNC5_9STRA (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNC5_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.380e-40
Identity = 64/107 (59.81%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    1 GSGLKGRIQVTLLNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFMATEDQYLFPNPAAPMVSEEYLFHFEFLGRVLGKAVFEDILVEPQFSPVFLNKLLGRVS 321
            G  LK RI+VT  ++ G +EAGIDGGG+FK++MD L +RAFDPQY LF  T +Q L+PNPA+P ++E++L HF F+GRVLGKA+F+ ILV P F+  FLNKLLGR++
Sbjct:   47 GPDLKHRIRVTFESELGYQEAGIDGGGLFKDFMDALAERAFDPQYGLFNVTSEQLLYPNPASPTLAEDHLAHFAFMGRVLGKAIFDKILVRPAFASFFLNKLLGRIN 153          
BLAST of mRNA_H-elongata_contig80219.15676.1 vs. uniprot
Match: K8YUL2_NANGC (HECT-type E3 ubiquitin transferase (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUL2_NANGC)

HSP 1 Score: 139 bits (350), Expect = 4.120e-40
Identity = 66/109 (60.55%), Postives = 85/109 (77.98%), Query Frame = 1
Query:    1 GSGLKGRIQVTLLNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFMATEDQYLFPNPAAPM-VSEEYLFHFEFLGRVLGKAVFEDILVEPQFSPVFLNKLLGRVSQ 324
            G GL+GR+QVT ++  G EEAGIDGGGVFKE+MD LTKRAFDPQYALF  T D  L+PNP + + V  ++L HF FLG+VL KA++E ILVEPQF+  FL +L G++++
Sbjct:    9 GHGLRGRVQVTFVSDLGTEEAGIDGGGVFKEFMDALTKRAFDPQYALFRVTPDHLLYPNPLSGLAVGPDHLQHFAFLGKVLAKALYESILVEPQFAIFFLQRLGGKLNE 117          
BLAST of mRNA_H-elongata_contig80219.15676.1 vs. uniprot
Match: A0A662XUZ5_9STRA (HECT-type E3 ubiquitin transferase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUZ5_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.620e-37
Identity = 68/109 (62.39%), Postives = 87/109 (79.82%), Query Frame = 1
Query:    4 SGLKGRIQVTLLNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFMATEDQYLFPNPAAPMVSE---EYLFHFEFLGRVLGKAVFEDILVEPQFSPVFLNKLLGRVS 321
            S LK RI+VT +N+ G+EEAGIDGGGVFKEY+D LTK AF P+Y  F+AT++Q L+PNPAA ++++   E L  F FLGRVL KAV+E+ILVEPQF+  FLNKLLG+ +
Sbjct:  820 SALKSRIKVTFINEQGLEEAGIDGGGVFKEYVDNLTKHAFSPEYGFFLATDEQLLYPNPAARLIADTRKEVLDRFRFLGRVLAKAVYENILVEPQFAAFFLNKLLGKFN 928          
BLAST of mRNA_H-elongata_contig80219.15676.1 vs. uniprot
Match: A0A3F2RBK9_9STRA (HECT-type E3 ubiquitin transferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RBK9_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.020e-36
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 1
Query:   10 LKGRIQVTLLNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFMATEDQYLFPNPAAPMVSE---EYLFHFEFLGRVLGKAVFEDILVEPQFSPVFLNKLLGRVS 321
            LK RI+VT +N+ G+EEAGIDGGGVFKEY+D LTK AF P+Y  F+AT+DQ L+PNP A  + +   E L  + FLGRVLGKAV+E+ILVEPQF+  FLNKLLG+ +
Sbjct:  561 LKSRIKVTFINEQGLEEAGIDGGGVFKEYVDTLTKSAFSPEYGFFLATDDQLLYPNPGARYIVDTRKEALDRYRFLGRVLGKAVYENILVEPQFAAFFLNKLLGKFN 667          
BLAST of mRNA_H-elongata_contig80219.15676.1 vs. uniprot
Match: A0A835YYA3_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA3_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.860e-36
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = 1
Query:    1 GSGLKGRIQVTLLNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFMATEDQYLFPNPAAPMVSEEYLFHFEFLGRVLGKAVFEDILVEPQFSPVFLNKLLGR 315
            G+GL+ R+QVT +N+HG+EEAGIDGGGV KE++D LTK  FDP   LF AT++Q L+P+P       + L  FEF G +LGKAVFE ILVEPQ SP FLN LLGR
Sbjct:   98 GAGLRRRLQVTFVNEHGMEEAGIDGGGVLKEFIDALTKCTFDPALGLFQATDEQLLYPSPDVDTADADTLARFEFAGSILGKAVFEGILVEPQLSPTFLNTLLGR 202          
BLAST of mRNA_H-elongata_contig80219.15676.1 vs. uniprot
Match: A0A024UCD8_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCD8_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.550e-36
Identity = 62/104 (59.62%), Postives = 83/104 (79.81%), Query Frame = 1
Query:   10 LKGRIQVTLLNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFMATEDQYLFPNPAAPMVSEEYLFHFEFLGRVLGKAVFEDILVEPQFSPVFLNKLLGRVS 321
            LKGR+Q+T +N+ G+EEAG+DGGGVFKEY+D LTK AF  ++  F AT+D+ L+PNP A +VS++ + HF FLGRVL KAV+E+IL+EPQF+  FL KLLG  +
Sbjct:  597 LKGRMQITFINEQGLEEAGVDGGGVFKEYIDTLTKTAFSTEFPYFRATDDRLLYPNPLAHVVSDDAVAHFRFLGRVLAKAVYEEILIEPQFALFFLKKLLGHFN 700          
BLAST of mRNA_H-elongata_contig80219.15676.1 vs. uniprot
Match: W7TQY7_9STRA (HECT-type E3 ubiquitin transferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQY7_9STRA)

HSP 1 Score: 139 bits (350), Expect = 4.940e-36
Identity = 66/109 (60.55%), Postives = 85/109 (77.98%), Query Frame = 1
Query:    1 GSGLKGRIQVTLLNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFMATEDQYLFPNPAAPM-VSEEYLFHFEFLGRVLGKAVFEDILVEPQFSPVFLNKLLGRVSQ 324
            G GL+GR+QVT ++  G EEAGIDGGGVFKE+MD LTKRAFDPQYALF  T D  L+PNP + + V  ++L HF FLG+VL KA++E ILVEPQF+  FL +L G++++
Sbjct:  936 GHGLRGRVQVTFVSDLGTEEAGIDGGGVFKEFMDALTKRAFDPQYALFRVTPDHLLYPNPLSGLAVGPDHLQHFAFLGKVLAKALYESILVEPQFAIFFLQRLGGKLNE 1044          
BLAST of mRNA_H-elongata_contig80219.15676.1 vs. uniprot
Match: A0A6A4BJM0_9STRA (HECT-type E3 ubiquitin transferase n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4BJM0_9STRA)

HSP 1 Score: 138 bits (348), Expect = 9.150e-36
Identity = 66/107 (61.68%), Postives = 83/107 (77.57%), Query Frame = 1
Query:   10 LKGRIQVTLLNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFMATEDQYLFPNPAAPMVSE---EYLFHFEFLGRVLGKAVFEDILVEPQFSPVFLNKLLGRVS 321
            LK RI+VT +N+ G+EEAGIDGGGVFKEYMD LTK AF P+Y  F+AT++Q L+PNP A  + +   E L  + FLGRVL KAV+E+ILVEPQF+  FLNKLLG+ +
Sbjct:  815 LKSRIKVTFINEQGLEEAGIDGGGVFKEYMDNLTKNAFSPEYGFFLATDEQLLYPNPGARYIVDTRKEALDRYRFLGRVLAKAVYENILVEPQFAAFFLNKLLGKFN 921          
BLAST of mRNA_H-elongata_contig80219.15676.1 vs. uniprot
Match: A0A6G0XCA9_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCA9_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.470e-34
Identity = 58/102 (56.86%), Postives = 82/102 (80.39%), Query Frame = 1
Query:   10 LKGRIQVTLLNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFMATEDQYLFPNPAAPMVSEEYLFHFEFLGRVLGKAVFEDILVEPQFSPVFLNKLLGR 315
            LKGR+Q+T +N+ G++EAG+DGGG+FKEYMD LTK AF  ++  F+ATE+  L+PNP A ++S++   HF FLGRVL KA++E+IL+EPQF+  FL K+LG+
Sbjct:  570 LKGRMQITFINEQGLDEAGVDGGGMFKEYMDTLTKTAFSTEFPCFLATEEGLLYPNPQAHLISDDAQEHFRFLGRVLAKALYEEILIEPQFALFFLQKMLGQ 671          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80219.15676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKM0_ECTSI3.430e-5788.79HECT-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
A0A7S2CNC5_9STRA1.380e-4059.81HECT-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
K8YUL2_NANGC4.120e-4060.55HECT-type E3 ubiquitin transferase (Fragment) n=2 ... [more]
A0A662XUZ5_9STRA1.620e-3762.39HECT-type E3 ubiquitin transferase n=2 Tax=Nothoph... [more]
A0A3F2RBK9_9STRA1.020e-3662.62HECT-type E3 ubiquitin transferase n=3 Tax=Phytoph... [more]
A0A835YYA3_9STRA2.860e-3660.95HECT-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A024UCD8_9STRA3.550e-3659.62HECT-type E3 ubiquitin transferase n=1 Tax=Aphanom... [more]
W7TQY7_9STRA4.940e-3660.55HECT-type E3 ubiquitin transferase n=3 Tax=Monodop... [more]
A0A6A4BJM0_9STRA9.150e-3661.68HECT-type E3 ubiquitin transferase n=5 Tax=Phytoph... [more]
A0A6G0XCA9_9STRA1.470e-3456.86HECT-type E3 ubiquitin transferase n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80219contigH-elongata_contig80219:1221..2063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue6.1e-49
Seed eggNOG ortholog2880.D7FKM0
KEGG koko:K10589
KEGG Pathwayko04120,map04120
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0942@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931208.1399322-CDS-H-elongata_contig80219:1220..13851622931208.1399322-CDS-H-elongata_contig80219:1220..1385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80219 1221..1385 -
1691679742.0942948-CDS-H-elongata_contig80219:1220..13851691679742.0942948-CDS-H-elongata_contig80219:1220..1385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80219 1221..1385 -
1622931208.158417-CDS-H-elongata_contig80219:1901..20631622931208.158417-CDS-H-elongata_contig80219:1901..2063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80219 1902..2063 -
1691679742.1045108-CDS-H-elongata_contig80219:1901..20631691679742.1045108-CDS-H-elongata_contig80219:1901..2063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80219 1902..2063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80219.15676.1prot_H-elongata_contig80219.15676.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80219 1221..2063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80219.15676.1

>prot_H-elongata_contig80219.15676.1 ID=prot_H-elongata_contig80219.15676.1|Name=mRNA_H-elongata_contig80219.15676.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
GSGLKGRIQVTLLNQHGVEEAGIDGGGVFKEYMDLLTKRAFDPQYALFMA
TEDQYLFPNPAAPMVSEEYLFHFEFLGRVLGKAVFEDILVEPQFSPVFLN
KLLGRVSQ*
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mRNA from alignment at H-elongata_contig80219:1221..2063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80219.15676.1 ID=mRNA_H-elongata_contig80219.15676.1|Name=mRNA_H-elongata_contig80219.15676.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=843bp|location=Sequence derived from alignment at H-elongata_contig80219:1221..2063- (Himanthalia elongata Himel1 dioecious)
GGGTCGGGACTCAAGGGGCGCATCCAGGTGACGCTATTGAACCAGCACGG GGTAGAGGAGGCCGGCATCGACGGGGGTGGGGTGTTCAAGGAGTACATGG ATCTCCTAACCAAGAGGGCGTTCGACCCACAGTACGCGCTGTTCATGGCC ACCGAGGATCAGGTGGGACCCCCGTCCCGCACACATACCATACGCACCGC TGCTGATTGGATGAAGGATTACCGCTGGTGGCGAGCTCAATCAGCAGCCG ATACTTGGTGACCGGGGTCATATTCTTGATGGTGACATTCCATTGTTACA GTAGCGTGGTTTGTAGACAAGGTATTAGCTGTGATTTTCATCTGTAAAGC ATAGCCGTAACGCCTCCCCCCAAAAAACAGGAGTCTGTGTTTTTAACAAA AGGGGGGCGTCACTGCTAACTGTGCGATTGCTTTTTGTATGTGTTTGAAT TCTGCGAGCAAGGGGTGCGATGTGGCCTGATCTTCGGAAGATGGGGGGGA TTCTGGGGAGAACTATGTAGCGGGTTTTATCTAAACGGGGTGTCTCTGTT TATGATGCGTTTCAGATTGGGTTTACCATAAAACAGGAGGCCATAGCCAG AGCGAGCAATCCTCACCCCGGAACCACAACACCCAACCTCTTTGGCCCTT GCTCTATTATGATCTGGTGTGTGGGCAGTATCTGTTCCCCAACCCGGCTG CCCCCATGGTATCGGAAGAGTATCTCTTCCATTTCGAGTTTCTTGGGCGC GTCCTCGGCAAGGCGGTGTTCGAAGATATCCTGGTAGAGCCCCAGTTCAG CCCCGTCTTCCTCAATAAACTCCTCGGGCGGGTGAGTCAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig80219:1221..2063-

>mRNA_H-elongata_contig80219.15676.1 ID=mRNA_H-elongata_contig80219.15676.1|Name=mRNA_H-elongata_contig80219.15676.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig80219:1221..2063- (Himanthalia elongata Himel1 dioecious)
GGGTCGGGACTCAAGGGGCGCATCCAGGTGACGCTATTGAACCAGCACGG
GGTAGAGGAGGCCGGCATCGACGGGGGTGGGGTGTTCAAGGAGTACATGG
ATCTCCTAACCAAGAGGGCGTTCGACCCACAGTACGCGCTGTTCATGGCC
ACCGAGGATCAGGGGTCGGGACTCAAGGGGCGCATCCAGGTGACGCTATT
GAACCAGCACGGGGTAGAGGAGGCCGGCATCGACGGGGGTGGGGTGTTCA
AGGAGTACATGGATCTCCTAACCAAGAGGGCGTTCGACCCACAGTACGCG
CTGTTCATGGCCACCGAGGATCAGTATCTGTTCCCCAACCCGGCTGCCCC
CATGGTATCGGAAGAGTATCTCTTCCATTTCGAGTTTCTTGGGCGCGTCC
TCGGCAAGGCGGTGTTCGAAGATATCCTGGTAGAGCCCCAGTTCAGCCCC
GTCTTCCTCAATAAACTCCTCGGGCGGGTGAGTCAATGATATCTGTTCCC
CAACCCGGCTGCCCCCATGGTATCGGAAGAGTATCTCTTCCATTTCGAGT
TTCTTGGGCGCGTCCTCGGCAAGGCGGTGTTCGAAGATATCCTGGTAGAG
CCCCAGTTCAGCCCCGTCTTCCTCAATAAACTCCTCGGGCGGGTGAGTCA
ATGA
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