mRNA_H-elongata_contig80213.15675.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80213.15675.1
Unique NamemRNA_H-elongata_contig80213.15675.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80213.15675.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 7.200e-48
Identity = 87/99 (87.88%), Postives = 94/99 (94.95%), Query Frame = 1
Query:    4 VLTGGKERPDVLGQALREKNRHWDFLLKEMMWMADDFQQERKRHIASAEKRQAKSVVLHFRGHEARMAKKAKEEQLALKRGASKVAREVRAFWGKLNKV 300
             +TGGKER DVLGQALREKNRHWDFLLKEMMWMADDFQQERKRH+ SA K+QA+SV+LHFRGHEAR AKKAKEEQLAL+RGASKVAR+VRAFWGKLNKV
Sbjct:  204 AITGGKERQDVLGQALREKNRHWDFLLKEMMWMADDFQQERKRHM-SARKKQARSVLLHFRGHEARKAKKAKEEQLALRRGASKVARDVRAFWGKLNKV 301          
BLAST of mRNA_H-elongata_contig80213.15675.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.210e-39
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 1
Query:   19 KERPDVLGQALREKNRHWDFLLKEMMWMADDFQQERKRHIASAEKRQAKSVVLHFRGHEARMAKKAKEEQLALKRGASKVAREVRAFWGKLNKV 300
            K   DVLGQALREKNRHWDFLLKEMMWMADDFQQERKRH+A       +SV+L+FRGHEAR AKKAKEEQLAL+RGASKVAR+VRAFWGKLNKV
Sbjct:  308 KRLQDVLGQALREKNRHWDFLLKEMMWMADDFQQERKRHMA-------RSVLLYFRGHEARKAKKAKEEQLALRRGASKVARDVRAFWGKLNKV 394          
BLAST of mRNA_H-elongata_contig80213.15675.1 vs. uniprot
Match: A0A7R9UGU8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGU8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.180e-17
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 1
Query:    4 VLTGGKERPDVLGQALREKNRHWDFLLKEMMWMADDFQQERKRHIASAEKRQAKSVVLHFRGHEARMAKKAKEEQLALKRGASKVAREVRAFWGKLNKVRG 306
             L GGK    V  +A R +  HWDFLLKEM+WM++DF QE+KRH   A K+  K+V  +FR  EAR A+  K+E   L+R A+++ R V+ FW K+NKV G
Sbjct:   91 TLNGGKRVRRVAIEAERRET-HWDFLLKEMLWMSEDFGQEKKRHQGRA-KKLVKAVETYFRQAEARKARAQKDELARLRRRAAQLGRSVKLFWSKINKVVG 189          
BLAST of mRNA_H-elongata_contig80213.15675.1 vs. uniprot
Match: A0A835ZKJ3_9STRA (SNF2 family N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKJ3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.090e-15
Identity = 40/78 (51.28%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   67 HWDFLLKEMMWMADDFQQERKRHIASAEKRQAKSVVLHFRGHEARMAKKAKEEQLALKRGASKVAREVRAFWGKLNKV 300
            HW+ LLKEM+WM++DF +E+ RH    +++ +KSV L+F   EAR A++ +E+  A +R A++VAREVR FWGKLN+V
Sbjct:    2 HWNSLLKEMLWMSEDFTKEKARH-RGFQRKLSKSVQLYFNNAEAREARREREQLAAERRAAARVAREVRHFWGKLNRV 78          
BLAST of mRNA_H-elongata_contig80213.15675.1 vs. uniprot
Match: A0A662Y0X3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0X3_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.560e-13
Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    4 VLTGGKERP-------DVLGQALREKNRHWDFLLKEMMWMADDFQQERKRHIASAEKRQAKSVVLHFRGHEARMAKKAKEEQLALKRGASKVAREVRAFWGKLNKV 300
             LT GK  P       D  G+  R    H DFLL+EM WMA DF QERK  + SA +  A+++V H    EAR+A++ K E++A +R A++V R+V+ FWGK++K+
Sbjct:   76 ALTLGKPLPRDVERGCDASGR--RVTRTHRDFLLQEMEWMAADFAQERKWRVKSA-RTVAQALVSHLDRQEARLARQKKGEEVAKRRTAARVGRDVKKFWGKIDKI 178          
BLAST of mRNA_H-elongata_contig80213.15675.1 vs. uniprot
Match: A0A662XZW8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZW8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.170e-12
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    4 VLTGGKERPDVLGQALREKNR-----HWDFLLKEMMWMADDFQQERKRHIASAEKRQAKSVVLHFRGHEARMAKKAKEEQLALKRGASKVAREVRAFWGKLNKV 300
             LT GK  P  + +      R     H DFLL+EM WMA DF QERK  + SA +  A+++  H    EAR+A++ K E++A +R A++V R+V+ FWGK++K+
Sbjct:   76 ALTLGKPLPRDMERGCDASGRRVTRAHRDFLLQEMEWMAADFSQERKWRVKSA-RTVAQALASHLDRQEARLARQKKGEEVAKRRTAARVGRDVKKFWGKIDKI 178          
BLAST of mRNA_H-elongata_contig80213.15675.1 vs. uniprot
Match: A0A448ZDW5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDW5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 9.040e-11
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   67 HWDFLLKEMMWMADDFQQERKRHIASAEKRQAKSVVLHFRGHEARMAKKAKEEQLALKRGASKVAREVRAFWGKLNKV 300
            HWDF+LKE+MW+  DF  ERKR IASA+K  A SV+      E R  ++ ++ +   K+ ASK+ R+V+ +W KL K+
Sbjct:  112 HWDFVLKELMWLGTDFSSERKRQIASAKKLGA-SVLKFHASRETRRLRRLQQAESKRKKVASKLGRDVKGWWTKLEKI 188          
BLAST of mRNA_H-elongata_contig80213.15675.1 vs. uniprot
Match: A0A1E7FQV3_9STRA (SNF2_N-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQV3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.190e-10
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   67 HWDFLLKEMMWMADDFQQERKRHIASAEKRQAKSVVLHFRGHEARMAKKAKEEQLALKRGASKVAREVRAFWGKLNKV 300
            HWDF++KEMMW+  DF+ ERKR IA+A K+ A SV  +    E R  ++  + +L  K+ A+K++R+V+++W KL KV
Sbjct:   12 HWDFVMKEMMWLGADFKSERKRQIAAA-KKLAVSVQKYHDTKEKRRLRQLSQAELKRKKLAAKISRDVKSWWTKLEKV 88          
BLAST of mRNA_H-elongata_contig80213.15675.1 vs. uniprot
Match: A0A8I6RHL2_CIMLE (Uncharacterized protein n=3 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RHL2_CIMLE)

HSP 1 Score: 67.0 bits (162), Expect = 1.240e-10
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    7 LTGGKERPDVLGQALREKNRHWDFLLKEMMWMADDFQQERKRHIASAEKRQAKSVVLHFRGHEARMAKKAKEEQLALKRGASKVAREVRAFWGKLNKV 300
            L   K  P V    L     HWD+L++EM W+A DF QERK   A+A K+ AK V  +F+  E    K  K +++ LKR AS +A+E++ FWG + K+
Sbjct:  258 LWAEKRLPKV--HELSRTKAHWDYLIEEMTWLAADFAQERKWKKAAA-KKCAKMVQKYFQEKEVLAQKAVKAQEMQLKRIASFIAKEIKTFWGNVEKL 352          
BLAST of mRNA_H-elongata_contig80213.15675.1 vs. uniprot
Match: M4B9S5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B9S5_HYAAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.690e-10
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   52 REKNRHWDFLLKEMMWMADDFQQERKRHIASAEKRQAKSVVLHFRGHEARMAKKAKEEQLALKRGASKVAREVRAFWGKLNKV 300
            R +  H DFLL+EM WMA DF QERK  + +A K  ++++V +    EAR+ ++ K + +A +R A++V REV+ FW K++K+
Sbjct:   97 RVERFHRDFLLQEMEWMAADFSQERKWRVRNA-KALSQALVSYLSRKEARLVRQQKRDDVARRRAAARVGREVKKFWSKIDKI 178          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80213.15675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTP0_ECTSI7.200e-4887.88Similar to E1a binding protein P400 (Partial) (Fra... [more]
A0A6H5KKD6_9PHAE1.210e-3981.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9UGU8_9STRA2.180e-1748.51Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835ZKJ3_9STRA4.090e-1551.28SNF2 family N-terminal domain-containing protein (... [more]
A0A662Y0X3_9STRA4.560e-1343.40Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A662XZW8_9STRA1.170e-1241.35Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A448ZDW5_9STRA9.040e-1144.87Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7FQV3_9STRA1.190e-1044.87SNF2_N-domain-containing protein (Fragment) n=1 Ta... [more]
A0A8I6RHL2_CIMLE1.240e-1040.82Uncharacterized protein n=3 Tax=Cimex lectularius ... [more]
M4B9S5_HYAAE1.690e-1042.17Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80213contigH-elongata_contig80213:263..1188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue2.1e-41
Seed eggNOG ortholog2880.D7FTP0
KEGG koko:K11320
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0391@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSNF2-related helicase/SANT domain protein
Ec32 orthologEc-11_001650.1
Exons2
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931208.0737016-CDS-H-elongata_contig80213:262..4111622931208.0737016-CDS-H-elongata_contig80213:262..411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80213 263..411 +
1691679742.0713527-CDS-H-elongata_contig80213:262..4111691679742.0713527-CDS-H-elongata_contig80213:262..411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80213 263..411 +
1622931208.0962672-CDS-H-elongata_contig80213:1007..11881622931208.0962672-CDS-H-elongata_contig80213:1007..1188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80213 1008..1188 +
1691679742.0831804-CDS-H-elongata_contig80213:1007..11881691679742.0831804-CDS-H-elongata_contig80213:1007..1188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80213 1008..1188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80213.15675.1prot_H-elongata_contig80213.15675.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80213 263..1188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80213.15675.1

>prot_H-elongata_contig80213.15675.1 ID=prot_H-elongata_contig80213.15675.1|Name=mRNA_H-elongata_contig80213.15675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
KVLTGGKERPDVLGQALREKNRHWDFLLKEMMWMADDFQQERKRHIASAE
KRQAKSVVLHFRGHEARMAKKAKEEQLALKRGASKVAREVRAFWGKLNKV
RGGGRRENV*
back to top

mRNA from alignment at H-elongata_contig80213:263..1188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80213.15675.1 ID=mRNA_H-elongata_contig80213.15675.1|Name=mRNA_H-elongata_contig80213.15675.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=926bp|location=Sequence derived from alignment at H-elongata_contig80213:263..1188+ (Himanthalia elongata Himel1 dioecious)
AAGGTGCTCACTGGGGGCAAGGAGCGGCCGGACGTGCTCGGGCAAGCGCT GAGGGAGAAGAACAGGCATTGGGACTTCTTGCTGAAGGAGATGATGTGGA TGGCCGACGACTTCCAGCAAGAGAGAAAGCGACACATAGCAAGTGCAGAG TTGACAGTCCCGACCGATCAAGCGAACGTCACATCTACATGGAGATAGGG GGGAATGCATAGTAGTTGATGCTTGGCCTCCCTTTGAGTCGTATAGCGAG AGCCACCGCGCATATACAGAATTGCGCTTTTTTTTCGCCTTTTAACGCCC CTCCCCCCACCTCCCGGTCGCCCCCTTCAATACCAGTACCAAACCCAACT ACTTCTGCTGCTGCCTGTAGGGCGTGTACCGATACTGCTGTACTTTTGTA CTTGAGTATATATTGTTGTAGACGTAAATGTAAACACACAATACTATGCT TTACAGTACCATACCGCACCATTTGACTGTACCATACCGTACCGATTTGA CTGTACCATACCGCACCATTTGACTGTATCATACCGCACCATTTGAATGT ACCATATCGTACCATTTGACTATACTATATCGCACCATTTGACTGTACCA TACCGTATCATTTGACTGTACCATACCGTATCATTTGACTGTACCATACC GTATCATTTGGCTGTATCATACCGTACCATTTGACTGTACCATACCGCAC CATTTGACTATACCATACCGCACCGTTTGACTGTCAGAGCTCGAGGAAAC GTCAAGCGAAGTCCGTCGTGCTGCACTTCCGAGGACACGAGGCACGCATG GCGAAGAAGGCGAAAGAAGAGCAGCTGGCCCTGAAAAGGGGGGCGTCCAA GGTGGCGCGCGAAGTGAGGGCGTTCTGGGGCAAGCTGAACAAGGTAAGAG GAGGAGGCAGAAGAGAGAATGTGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig80213:263..1188+

>mRNA_H-elongata_contig80213.15675.1 ID=mRNA_H-elongata_contig80213.15675.1|Name=mRNA_H-elongata_contig80213.15675.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig80213:263..1188+ (Himanthalia elongata Himel1 dioecious)
AAGGTGCTCACTGGGGGCAAGGAGCGGCCGGACGTGCTCGGGCAAGCGCT
GAGGGAGAAGAACAGGCATTGGGACTTCTTGCTGAAGGAGATGATGTGGA
TGGCCGACGACTTCCAGCAAGAGAGAAAGCGACACATAGCAAGTGCAGAA
AGGTGCTCACTGGGGGCAAGGAGCGGCCGGACGTGCTCGGGCAAGCGCTG
AGGGAGAAGAACAGGCATTGGGACTTCTTGCTGAAGGAGATGATGTGGAT
GGCCGACGACTTCCAGCAAGAGAGAAAGCGACACATAGCAAGTGCAGAGA
AACGTCAAGCGAAGTCCGTCGTGCTGCACTTCCGAGGACACGAGGCACGC
ATGGCGAAGAAGGCGAAAGAAGAGCAGCTGGCCCTGAAAAGGGGGGCGTC
CAAGGTGGCGCGCGAAGTGAGGGCGTTCTGGGGCAAGCTGAACAAGGTAA
GAGGAGGAGGCAGAAGAGAGAATGTGTAAGAAACGTCAAGCGAAGTCCGT
CGTGCTGCACTTCCGAGGACACGAGGCACGCATGGCGAAGAAGGCGAAAG
AAGAGCAGCTGGCCCTGAAAAGGGGGGCGTCCAAGGTGGCGCGCGAAGTG
AGGGCGTTCTGGGGCAAGCTGAACAAGGTAAGAGGAGGAGGCAGAAGAGA
GAATGTGTAA
back to top