prot_H-elongata_contig80186.15673.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80186.15673.1
Unique Nameprot_H-elongata_contig80186.15673.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length69
Homology
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: W6UWI8_ECHGR (GDP-fucose transporter n=2 Tax=Echinococcus granulosus TaxID=6210 RepID=W6UWI8_ECHGR)

HSP 1 Score: 54.3 bits (129), Expect = 7.200e-7
Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 0
Query:    1 LTRSRHLEALRGFLDLEMAEETKSRWHI---AGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTWSQ 66
            LTR   L  +RG    ++  E +S +++    GVV+LYW+VSISLVF+NK ++S ++  + +P+F+TW Q
Sbjct:   89 LTRRLFLITIRGIHIKKILAEARSVYNVKRVCGVVSLYWAVSISLVFINKWLLSNSDISLDIPLFITWFQ 158          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: A0A6F9DT87_9ASCI (GDP-fucose transporter 1 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DT87_9ASCI)

HSP 1 Score: 53.5 bits (127), Expect = 1.310e-6
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 0
Query:   28 IAGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTWSQ 66
            + GVVALYWSVSISLVFLNK ++  ++ K++ P+FVTW Q
Sbjct:   24 VVGVVALYWSVSISLVFLNKYLLKSDDLKLNAPLFVTWFQ 63          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: A0A482UTD3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UTD3_9ARCH)

HSP 1 Score: 50.1 bits (118), Expect = 3.100e-6
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 0
Query:   22 TKSRWHIAGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTW 64
            T +  H+  VVA YW VSIS+V+LNK+++S ++  ++ P+FVTW
Sbjct:    9 TPTHLHVVSVVAAYWVVSISMVYLNKILLSNDQTSITAPLFVTW 52          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: C1C273_CALCM (GDP-fucose transporter 1 n=1 Tax=Caligus clemensi TaxID=344056 RepID=C1C273_CALCM)

HSP 1 Score: 52.4 bits (124), Expect = 3.300e-6
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 0
Query:   31 VVALYWSVSISLVFLNKVIVSGNEKVSVPIFVTWSQ 66
            VV LYW +SISLVF+NK ++SG+E +  P+F+TW Q
Sbjct:   15 VVVLYWVISISLVFINKALLSGSETIDAPLFITWFQ 50          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: B3RIC0_TRIAD (GDP-fucose transporter 1 n=3 Tax=Trichoplax TaxID=10227 RepID=B3RIC0_TRIAD)

HSP 1 Score: 51.2 bits (121), Expect = 8.600e-6
Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 0
Query:   18 MAEETKSR-WHIAGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTWSQ 66
            M+E  +SR   IA VV+ YW +SIS+VF+NK ++S N+ K++ PIFVTW Q
Sbjct:    1 MSESLRSRSLKIATVVSAYWFISISMVFVNKYLLSSNDLKLNAPIFVTWFQ 51          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: D7G6N8_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6N8_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 8.640e-6
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0
Query:   20 EETKSRWHIAGVVALYWSVSISLVFLNKVIVSGNEKVSVPIFVTWSQ 66
            E +K+   + GV+A YW VSISLV++NK I+S     S PIF+TWSQ
Sbjct:    4 ESSKAMLRVTGVIAQYWVVSISLVYINKFILSEQ---SAPIFITWSQ 47          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: A0A6S9GXW0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GXW0_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 8.640e-6
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 0
Query:   18 MAEETKSRWHIAGVVALYWSVSISLVFLNKVIVSGNEKVSVPIFVTWSQ 66
            M    + + ++  VVA YW VSIS+V+LNK +++GNE +S P+FVTW Q
Sbjct:    1 MTNADRGKNYVLSVVASYWFVSISMVYLNKYLMNGNE-LSAPLFVTWYQ 48          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: A0A7S2LFH9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LFH9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.020e-5
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0
Query:   27 HIAGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTWSQ 66
            +IA VVA YW VSIS+V+LNKV++S  E  ++ P+FVTW Q
Sbjct:   46 YIASVVAAYWFVSISMVYLNKVLMSSEEVSINAPLFVTWFQ 86          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: A0A4D9D3X9_9STRA (TPT domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3X9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.620e-5
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 0
Query:   27 HIAGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTWSQ 66
            HIA VVA YW VSIS+V+LNKV+++ +E  +  P+F+TW Q
Sbjct:    3 HIASVVAAYWIVSISMVYLNKVLMTNSEFSIPAPLFMTWFQ 43          
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Match: A0A6J8BY11_MYTCO (SLC35C1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BY11_MYTCO)

HSP 1 Score: 49.3 bits (116), Expect = 1.630e-5
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0
Query:   28 IAGVVALYWSVSISLVFLNKVIVSGNE-KVSVPIFVTWSQ 66
            IA VVA YW VSIS+VFLNK ++S  + K++ P+F+TW Q
Sbjct:   24 IAAVVATYWCVSISMVFLNKYLLSSEDLKLNAPLFITWYQ 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80186.15673.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W6UWI8_ECHGR7.200e-741.43GDP-fucose transporter n=2 Tax=Echinococcus granul... [more]
A0A6F9DT87_9ASCI1.310e-662.50GDP-fucose transporter 1 n=1 Tax=Phallusia mammill... [more]
A0A482UTD3_9ARCH3.100e-647.73Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
C1C273_CALCM3.300e-658.33GDP-fucose transporter 1 n=1 Tax=Caligus clemensi ... [more]
B3RIC0_TRIAD8.600e-652.94GDP-fucose transporter 1 n=3 Tax=Trichoplax TaxID=... [more]
D7G6N8_ECTSI8.640e-653.19TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6S9GXW0_HETAK8.640e-648.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2LFH9_9STRA1.020e-558.54Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A4D9D3X9_9STRA1.620e-556.10TPT domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A6J8BY11_MYTCO1.630e-557.50SLC35C1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029666GDP-fucose transporterPANTHERPTHR11132:SF255GDP-FUCOSE TRANSPORTER 1coord: 20..67
NoneNo IPR availablePANTHERPTHR11132SOLUTE CARRIER FAMILY 35coord: 20..67
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..45
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 46..68
NoneNo IPR availableTMHMMTMhelixcoord: 26..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80186contigH-elongata_contig80186:75..281 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80186.15673.1mRNA_H-elongata_contig80186.15673.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80186 75..281 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80186.15673.1 ID=prot_H-elongata_contig80186.15673.1|Name=mRNA_H-elongata_contig80186.15673.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
LTRSRHLEALRGFLDLEMAEETKSRWHIAGVVALYWSVSISLVFLNKVIV
SGNEKVSVPIFVTWSQVR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029666GDP-fucose_transp