mRNA_H-elongata_contig80153.15672.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80153.15672.1
Unique NamemRNA_H-elongata_contig80153.15672.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80153.15672.1 vs. uniprot
Match: D8LRQ0_ECTSI (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ0_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 7.890e-67
Identity = 99/109 (90.83%), Postives = 105/109 (96.33%), Query Frame = 1 
Query:   13 SGSMEPAFQRGDILFLNNDDSPLRSGEVVVFKIKDREIPIVHRIMNVHEKPDGTISVLTKGDNNKVNDRGLYAPDQMWLSREDILGRAKGTLRYVGMVTIILNDYPPLK 339
            SGSMEPAFQRGDILFL+N D PLR+GEVVVFKIKDREIPIVHR+MNVHEKPDG+ISVLTKGD+NKVNDRGLY P QMWLSREDILGRA+GTLRYVGMVTIILNDYPPLK
Sbjct:   58 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLK 166
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BLAST of mRNA_H-elongata_contig80153.15672.1 vs. uniprot
Match: A0A835Z4U9_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A835Z4U9_9STRA)

HSP 1 Score: 197 bits (501), Expect = 1.400e-62
Identity = 92/109 (84.40%), Postives = 100/109 (91.74%), Query Frame = 1 
Query:   13 SGSMEPAFQRGDILFLNNDDSPLRSGEVVVFKIKDREIPIVHRIMNVHEKPDGTISVLTKGDNNKVNDRGLYAPDQMWLSREDILGRAKGTLRYVGMVTIILNDYPPLK 339
            SGSMEPAFQRGDILFLNN D P+R GEVVVFKIKDR+IPIVHRIM VHEKPDGT+ VLTKGDNN+V+DRGLYAP Q+WL REDILGRA+G LRYVGMVTI+LNDYP LK
Sbjct:   57 SGSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHRIMKVHEKPDGTVEVLTKGDNNRVDDRGLYAPGQLWLQREDILGRARGALRYVGMVTIVLNDYPALK 165
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BLAST of mRNA_H-elongata_contig80153.15672.1 vs. uniprot
Match: A0A7S3M735_9STRA (Signal peptidase I n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M735_9STRA)

HSP 1 Score: 192 bits (489), Expect = 9.360e-61
Identity = 89/109 (81.65%), Postives = 100/109 (91.74%), Query Frame = 1 
Query:   13 SGSMEPAFQRGDILFLNNDDSPLRSGEVVVFKIKDREIPIVHRIMNVHEKPDGTISVLTKGDNNKVNDRGLYAPDQMWLSREDILGRAKGTLRYVGMVTIILNDYPPLK 339
            SGSMEPAFQRGDILFL N D P+R+GE+VVFKIKDR+IPIVHR+M VHEK DG++ VLTKGDNN+V+DRGLYAP Q+WL REDILGRAKGTLRY+GMVTIILNDYP LK
Sbjct:   57 SGSMEPAFQRGDILFLTNQDDPIRAGEIVVFKIKDRDIPIVHRVMKVHEKEDGSVEVLTKGDNNRVDDRGLYAPGQLWLQREDILGRAKGTLRYLGMVTIILNDYPVLK 165
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BLAST of mRNA_H-elongata_contig80153.15672.1 vs. uniprot
Match: A0A7S0SWE0_9STRA (Signal peptidase I n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWE0_9STRA)

HSP 1 Score: 191 bits (485), Expect = 3.800e-60
Identity = 90/109 (82.57%), Postives = 98/109 (89.91%), Query Frame = 1 
Query:   13 SGSMEPAFQRGDILFLNNDDSPLRSGEVVVFKIKDREIPIVHRIMNVHEKPDGTISVLTKGDNNKVNDRGLYAPDQMWLSREDILGRAKGTLRYVGMVTIILNDYPPLK 339
            SGSMEPAFQRGDILFLNN D P+R GE+VVFKIKDR+IPIVHR+M VHEK DG I VLTKGDNN+V+DRGLYAP Q WL REDILGRA+GTLRY+GMVTIILNDYP LK
Sbjct:   57 SGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVMKVHEKADGKIEVLTKGDNNRVDDRGLYAPGQQWLQREDILGRARGTLRYLGMVTIILNDYPILK 165
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BLAST of mRNA_H-elongata_contig80153.15672.1 vs. uniprot
Match: A0A7S1U989_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7S1U989_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.590e-59
Identity = 88/109 (80.73%), Postives = 100/109 (91.74%), Query Frame = 1 
Query:   13 SGSMEPAFQRGDILFLNNDDSPLRSGEVVVFKIKDREIPIVHRIMNVHEKPDGTISVLTKGDNNKVNDRGLYAPDQMWLSREDILGRAKGTLRYVGMVTIILNDYPPLK 339
            SGSMEPAFQRGDILFL+N DSP+R GE+VVFKIKDR+IPIVHR+  VHEKPDG + +LTKGDNN+V+DRGLYAP Q+WL+REDILGRA GTLRYVGMVTIILND+P LK
Sbjct:   58 SGSMEPAFQRGDILFLSNHDSPIRVGEIVVFKIKDRDIPIVHRVTKVHEKPDGKVELLTKGDNNRVDDRGLYAPGQLWLNREDILGRAVGTLRYVGMVTIILNDFPALK 166
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BLAST of mRNA_H-elongata_contig80153.15672.1 vs. uniprot
Match: A0A6V1QND9_HETAK (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QND9_HETAK)

HSP 1 Score: 189 bits (480), Expect = 2.260e-59
Identity = 89/109 (81.65%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:   13 SGSMEPAFQRGDILFLNNDDSPLRSGEVVVFKIKDREIPIVHRIMNVHEKPDGTISVLTKGDNNKVNDRGLYAPDQMWLSREDILGRAKGTLRYVGMVTIILNDYPPLK 339
            SGSMEPAFQRGDILFL N   P+R+GEVVVFKIKDREIPIVHR+M VHEK DG +  LTKGDNN+V+DRGLYAP Q+WL REDILGRA+GTLRYVGMVTIILNDYP LK
Sbjct:   58 SGSMEPAFQRGDILFLTNHQDPIRAGEVVVFKIKDREIPIVHRVMKVHEKGDGAVEALTKGDNNRVDDRGLYAPGQLWLGREDILGRARGTLRYVGMVTIILNDYPVLK 166
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BLAST of mRNA_H-elongata_contig80153.15672.1 vs. uniprot
Match: A0A812TB49_SYMMI (Signal peptidase I n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TB49_SYMMI)

HSP 1 Score: 186 bits (472), Expect = 1.260e-58
Identity = 85/109 (77.98%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:   13 SGSMEPAFQRGDILFLNNDDSPLRSGEVVVFKIKDREIPIVHRIMNVHEKPDGTISVLTKGDNNKVNDRGLYAPDQMWLSREDILGRAKGTLRYVGMVTIILNDYPPLK 339
            SGSM PAFQRGDILFLNN + P+R GE+VVFKIKDR+IPIVHR++ VHEK DG + +LTKGDNN+V+DRGLYAP QMWL R DILGRAKG LRY+GMVTI+LNDYPPLK
Sbjct:   28 SGSMMPAFQRGDILFLNNYNDPIRVGEIVVFKIKDRDIPIVHRVLKVHEKEDGEVEILTKGDNNRVHDRGLYAPGQMWLKRSDILGRAKGVLRYLGMVTIVLNDYPPLK 136
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BLAST of mRNA_H-elongata_contig80153.15672.1 vs. uniprot
Match: W7TFR1_9STRA (Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFR1_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.300e-58
Identity = 86/109 (78.90%), Postives = 98/109 (89.91%), Query Frame = 1 
Query:   13 SGSMEPAFQRGDILFLNNDDSPLRSGEVVVFKIKDREIPIVHRIMNVHEKPDGTISVLTKGDNNKVNDRGLYAPDQMWLSREDILGRAKGTLRYVGMVTIILNDYPPLK 339
            SGSMEPAFQRGDILFLNN D P+R GE+VVFKIKDR+IPIVHR++ VH+K DG + +LTKGDNN+V DRGLYAP Q+WL+REDILGRA GTLRY+GMVTIILNDYP LK
Sbjct:   58 SGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLK 166
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BLAST of mRNA_H-elongata_contig80153.15672.1 vs. uniprot
Match: A0A7S2RVP6_9STRA (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVP6_9STRA)

HSP 1 Score: 184 bits (466), Expect = 2.860e-57
Identity = 87/109 (79.82%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:   13 SGSMEPAFQRGDILFLNNDDSPLRSGEVVVFKIKDREIPIVHRIMNVHEKPDGTISVLTKGDNNKVNDRGLYAPDQMWLSREDILGRAKGTLRYVGMVTIILNDYPPLK 339
            SGSMEPAFQRGDILFLNN D P+R GEVVVFKIKDR+IPIVHR++ VHEKPDG + +LTKGDNN+V+DRGLYA  Q ++ REDILGRA GTLRYVGMVTIILNDYP LK
Sbjct:   57 SGSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHRVLKVHEKPDGRVELLTKGDNNRVDDRGLYALGQQFIGREDILGRAVGTLRYVGMVTIILNDYPALK 165
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BLAST of mRNA_H-elongata_contig80153.15672.1 vs. uniprot
Match: F0YAE9_AURAN (Signal peptidase I n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0YAE9_AURAN)

HSP 1 Score: 183 bits (464), Expect = 8.670e-57
Identity = 89/120 (74.17%), Postives = 100/120 (83.33%), Query Frame = 1 
Query:   13 SGSMEPAFQRGDILFLNNDDSPLRSGEVVVFKIKDREIPIVHRIMNVHEKPDGTISVLTKGDNNKVNDRGLYAPDQMWLSREDILGRAK-----------GTLRYVGMVTIILNDYPPLK 339
            SGSMEPAFQRGDILFLNN D+P+R GEVVVFKIKDR+IPIVHR+M VHEK DG + +LTKGDNN+V+DRGLYAP Q+WL+RED+LGRA            GTLRYVGMVTIILNDYP LK
Sbjct:   57 SGSMEPAFQRGDILFLNNQDNPIRVGEVVVFKIKDRDIPIVHRVMKVHEKADGAVELLTKGDNNRVDDRGLYAPGQLWLAREDVLGRAIRGGNKMIQGAIGTLRYVGMVTIILNDYPALK 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80153.15672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ0_ECTSI7.890e-6790.83Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A835Z4U9_9STRA1.400e-6284.40Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A7S3M735_9STRA9.360e-6181.65Signal peptidase I n=1 Tax=Spumella elongata TaxID... [more]
A0A7S0SWE0_9STRA3.800e-6082.57Signal peptidase I n=1 Tax=Chromulina nebulosa Tax... [more]
A0A7S1U989_9STRA1.590e-5980.73Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A6V1QND9_HETAK2.260e-5981.65Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A812TB49_SYMMI1.260e-5877.98Signal peptidase I n=1 Tax=Symbiodinium microadria... [more]
W7TFR1_9STRA1.300e-5878.90Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A7S2RVP6_9STRA2.860e-5779.82Signal peptidase complex catalytic subunit SEC11C ... [more]
F0YAE9_AURAN8.670e-5774.17Signal peptidase I n=3 Tax=Pelagomonadales TaxID=5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80153contigH-elongata_contig80153:344..1451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.3
Seed ortholog evalue1.4e-50
Seed eggNOG ortholog2880.D8LRQ0
Preferred nameSEC11C
KEGG koko:K10686,ko:K13280
KEGG Pathwayko03060,ko04120,map03060,map04120
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0031090,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
EggNOG free text desc.signal peptide processing
EggNOG OGsCOG0681@1,KOG3342@2759
EC3.4.21.89,6.2.1.45
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size342
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80153.15672.1prot_H-elongata_contig80153.15672.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80153 365..1451 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931207.79129-UTR-H-elongata_contig80153:343..3641622931207.79129-UTR-H-elongata_contig80153:343..364Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80153 344..364 +
1691679741.9521728-UTR-H-elongata_contig80153:343..3641691679741.9521728-UTR-H-elongata_contig80153:343..364Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80153 344..364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931207.8104641-CDS-H-elongata_contig80153:364..5041622931207.8104641-CDS-H-elongata_contig80153:364..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80153 365..504 +
1691679741.9755425-CDS-H-elongata_contig80153:364..5041691679741.9755425-CDS-H-elongata_contig80153:364..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80153 365..504 +
1622931207.829524-CDS-H-elongata_contig80153:824..8701622931207.829524-CDS-H-elongata_contig80153:824..870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80153 825..870 +
1691679741.987634-CDS-H-elongata_contig80153:824..8701691679741.987634-CDS-H-elongata_contig80153:824..870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80153 825..870 +
1622931207.8546517-CDS-H-elongata_contig80153:1316..14511622931207.8546517-CDS-H-elongata_contig80153:1316..1451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80153 1317..1451 +
1691679741.9977336-CDS-H-elongata_contig80153:1316..14511691679741.9977336-CDS-H-elongata_contig80153:1316..1451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80153 1317..1451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80153.15672.1

>prot_H-elongata_contig80153.15672.1 ID=prot_H-elongata_contig80153.15672.1|Name=mRNA_H-elongata_contig80153.15672.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MEPAFQRGDILFLNNDDSPLRSGEVVVFKIKDREIPIVHRIMNVHEKPDG
TISVLTKGDNNKVNDRGLYAPDQMWLSREDILGRAKGTLRYVGMVTIILN
DYPPLK*
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mRNA from alignment at H-elongata_contig80153:344..1451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80153.15672.1 ID=mRNA_H-elongata_contig80153.15672.1|Name=mRNA_H-elongata_contig80153.15672.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1108bp|location=Sequence derived from alignment at H-elongata_contig80153:344..1451+ (Himanthalia elongata Himel1 dioecious)
TTTTTGTTTTGCAGTGGGTCGATGGAGCCAGCTTTCCAACGCGGGGATAT
TCTGTTCCTCAACAACGACGACTCGCCGCTCCGGTCCGGTGAGGTCGTGG
TCTTCAAGATCAAGGATAGGGAGATCCCCATCGTTCATCGGATAATGAAC
GTGCACGAAAAGTGAGGGCGCCTGCCTCCGCATGAACTTCTGCATGAAAC
TGAAGGGTACGGGGGGGTACTACTCCTTTTGAGATTTTGAAAGAAGCAGT
GCTTGTGTTGGAAGCGAAAACTGTGCTACCGTCAAGTATTGTACTCTGTC
GAAAGGTGGTGTGCAGTAACACCCTCCCCAGCGACACAGATATCCACCAC
ACACTGCCTGTGCTCGCAGCACCCTGACCCACCCTGACCTCAAATGCGGC
CGTCGCTCCTGCTGCCTGTTCGACCCGTGATGACTTATCACTTTCTATTT
TATATATCGTTCTGGACACGGTGAAAAAAAGGCCGGACGGGACGATATCT
GTCCTCACGAAGGGAGATAACAACAAGGTTGGTGCTCCCCCAACAGCAAA
AGTGTCGTACTAATAGGAGTGCCGCGCAGGGATCGATATATATTTTGCTC
GACGACAAACCACCCGCACCGCACTGCACCTTTCGACTGTTCTTGTTGTG
TTCTGTACTTCATATTCATTTTTCCGGCTGCGAAACGACATGGGATGCTA
TATGGGATGATATGAGGCTTTGAAGGAATCCCCGCTGTTTCAACTCGTGC
GTGCTTTTGAAGTACACAACGGAGTTGAGTGAAGAGTGTTTGTATATCAA
GCGCAGAGTACAAAATAATTCAGGAAAACACCCAAGGTTGTCGTGGATTC
TTTCCCCATTCCCGCTAGATTATTTGCAAGCCAGATGATGCGCGTTGGCG
TCGCCATCGTCTTCCAACGTAGCTAGTACACACGCGCCAAGCGCATAAAG
CTTTTGGTGTGATCTTTTGGCAGGTGAACGATCGGGGACTGTACGCGCCG
GACCAAATGTGGCTGAGTCGCGAGGACATCCTGGGCAGGGCGAAGGGGAC
CCTCCGCTACGTGGGAATGGTGACCATTATCCTTAATGACTACCCACCGC
TCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig80153:344..1451+

>mRNA_H-elongata_contig80153.15672.1 ID=mRNA_H-elongata_contig80153.15672.1|Name=mRNA_H-elongata_contig80153.15672.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig80153:344..1451+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCCAGCTTTCCAACGCGGGGATATTCTGTTCCTCAACAACGACGA
CTCGCCGCTCCGGTCCGGTGAGGTCGTGGTCTTCAAGATCAAGGATAGGG
AGATCCCCATCGTTCATCGGATAATGAACGTGCACGAAAAATGGAGCCAG
CTTTCCAACGCGGGGATATTCTGTTCCTCAACAACGACGACTCGCCGCTC
CGGTCCGGTGAGGTCGTGGTCTTCAAGATCAAGGATAGGGAGATCCCCAT
CGTTCATCGGATAATGAACGTGCACGAAAAGCCGGACGGGACGATATCTG
TCCTCACGAAGGGAGATAACAACAAGGCCGGACGGGACGATATCTGTCCT
CACGAAGGGAGATAACAACAAGGTGAACGATCGGGGACTGTACGCGCCGG
ACCAAATGTGGCTGAGTCGCGAGGACATCCTGGGCAGGGCGAAGGGGACC
CTCCGCTACGTGGGAATGGTGACCATTATCCTTAATGACTACCCACCGCT
CAAGTGAGTGAACGATCGGGGACTGTACGCGCCGGACCAAATGTGGCTGA
GTCGCGAGGACATCCTGGGCAGGGCGAAGGGGACCCTCCGCTACGTGGGA
ATGGTGACCATTATCCTTAATGACTACCCACCGCTCAAGTGA
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