mRNA_H-elongata_contig80111.15669.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80111.15669.1
Unique NamemRNA_H-elongata_contig80111.15669.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A6H5KYH6_9PHAE (Vps54_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH6_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 4.200e-86
Identity = 177/264 (67.05%), Postives = 193/264 (73.11%), Query Frame = 1
Query:    1 ICLTVCLSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLAVTTPVE----TGWEGGLIAAPEMTRDS-----ESWEM--------GFETENGRA-DTSGA-SGSRDELRRGLELVVQGLLRLGEMERVLGVVQERLSEDLKLIIRCV 735
            +CL   +S RS+AFFEGLKTSQDLQ HVTGACTTLYQL         RESM  ME++V+AGPMR+PQLQRRR NL++LEATLELVA VQQSQAAI+   GLLAAEDYLGALDILQSAKSTVKNELGKL SL+NVGRQL EYEELVS LLSNRFV+LAVT PV+    T   G         RD       SWE         G    NGR  D  GA S   DELRR LELVVQGLLRLGEMERVLG+VQ+R+SEDLKLIIR V
Sbjct:  317 VCLLKQISHRSDAFFEGLKTSQDLQTHVTGACTTLYQL---------RESMRCMEKDVLAGPMRVPQLQRRRSNLSSLEATLELVARVQQSQAAIE---GLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVALAVTIPVDVVGSTAAGGAATGGSGNGRDDPAAGLSSWETAAAADHDGGDAATNGRGGDAGGAISAGGDELRRDLELVVQGLLRLGEMERVLGIVQDRVSEDLKLIIRTV 568          
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 3.550e-83
Identity = 176/266 (66.17%), Postives = 193/266 (72.56%), Query Frame = 1
Query:    1 ICLTVCLSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLAVTTPVE-----------TGWEGGLIAAPEMTRDSESWEMGFET--ENGRADTSGASGSR--------DELRRGLELVVQGLLRLGEMERVLGVVQERLSEDLKLIIRCV 735
            +CL   +S RS+AFFEGLKTSQDLQ HVTGACTTLYQL         RESM  ME++V+AGPMR+PQLQRRR NL++LEATLELVA VQQSQAAI+   GLLAAEDYLGALDILQSAKSTVKNELGKL SL+NVGRQL EYEELVS LLSNRFV+LAVT PV+           TG  G     P       SWE    T  E G A T+G  G          DE+RR LELVVQGLLRLGEMERVLGVVQ+R+SEDLKLIIR V
Sbjct:  232 VCLLKQISHRSDAFFEGLKTSQDLQTHVTGACTTLYQL---------RESMRCMEKDVLAGPMRVPQLQRRRGNLSSLEATLELVARVQQSQAAIE---GLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVALAVTIPVDVVGSAAAGGAATGGNGNGRGDP--ADGLSSWETAAATDREGGDAATNGRGGEAGGAISAGGDEMRRDLELVVQGLLRLGEMERVLGVVQDRVSEDLKLIIRTV 483          
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A835YJU9_9STRA (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU9_9STRA)

HSP 1 Score: 134 bits (337), Expect = 4.200e-32
Identity = 92/240 (38.33%), Postives = 139/240 (57.92%), Query Frame = 1
Query:   19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLAV-TTPVETGWEGGLIAAPEMTRDSESWEMGFETENGRADTSGASGSRDELRRGLELVVQGLLRLGEMERVLGVVQERLSEDLKLIIRCV 735
            +SARS+AF EGL+T+  L+  V+ ACT++ QL         R +M+R+E EVV   +R+PQL +R+ NL +L+  LELV  +++S+ A++    LLAA+DY GALD+L+ A+  +  +L  +  L+   RQ++EYE+L   +L++R +S+A  T P E G  GG  A         +                      +L   L  VVQ + RLG++E+VL + +ERL EDLKLIIR V
Sbjct:  275 ISARSDAFLEGLETTHALRKVVSQACTSVQQL---------RAAMARIESEVVTKAIRVPQLAQRQQNLMSLQGYLELVQSIERSKLAVEP---LLAADDYSGALDVLEGARRALARDLSDMHCLRAASRQMSEYEDLAFAMLTSRLLSVAQHTRPGEAGGHGGDDAXXXXXXXXXA----------------------DLEAALVPVVQAVERLGKLEKVLDMFEERLLEDLKLIIRTV 480          
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A7S2BIV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BIV8_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.280e-19
Identity = 61/160 (38.12%), Postives = 92/160 (57.50%), Query Frame = 1
Query:    1 ICLTVCLSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLAVTT 480
            +CL   +S+R ++FFE L   QDLQ+ VT ACT +  L         R  +  M+Q +V+G M++PQL RR+ NL AL + LE V  V +++ A++A   L  AED+ GAL IL  A+      L  ++ +  + +QL EYE      L+ +FV++AV T
Sbjct:   35 VCLLRQISSRQDSFFEALSNLQDLQLDVTQACTKVNTL---------RRGVRGMQQNMVSGTMKVPQLARRKSNLNALHSVLEQVLKVLEAKDAVEA---LFKAEDFAGALSILTEARKMTSESLHNVRCVHVLDKQLMEYELSAIRFLATQFVNVAVDT 182          
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: W5U8J1_ICTPU (Vacuolar protein sorting-associated protein 54 n=7 Tax=Siluroidei TaxID=1489793 RepID=W5U8J1_ICTPU)

HSP 1 Score: 67.4 bits (163), Expect = 3.940e-9
Identity = 44/149 (29.53%), Postives = 81/149 (54.36%), Query Frame = 1
Query:   19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVS 465
            +S RS AFF  + + ++LQ  +  A          +A R  RE  + M + ++ GP+R  +    R N   L   L+L+A VQQ+Q  +Q    LL+  +++GAL+++ + K  ++ EL  + S +++G QL E E+L+ +++   F +
Sbjct:  232 ISLRSEAFFHAMSSQRELQEQLCEAA---------DAVRALREHTAGMGRTMIRGPLRALRHTVTRRNCVTLHGKLKLMAAVQQTQPTVQL---LLSTSEFVGALELINTTKEVLQQELQGIHSFRHLGSQLCEMEKLIDKMMVADFTT 368          
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A553Q812_9TELE (Vacuolar protein sorting-associated protein 54 n=2 Tax=Danionella translucida TaxID=623744 RepID=A0A553Q812_9TELE)

HSP 1 Score: 67.0 bits (162), Expect = 5.310e-9
Identity = 46/151 (30.46%), Postives = 85/151 (56.29%), Query Frame = 1
Query:   19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLA 471
            +S RS+AFF  + +   LQ  ++    ++ +LR   A       + R+   +   P+R+ +  R R+N  AL+A L+L+A +QQ+Q  +Q    LLA  ++ GAL+++ ++K  ++ EL  + S +++G QL E E L+ +++   F S A
Sbjct:  237 ISLRSDAFFHAMSSQHQLQDRLSETADSVSRLRARTA------GIHRV---LCRAPLRVLRDVRSRNNCVALQAKLQLMAALQQTQPTVQL---LLAGGEFTGALELISTSKEVLQQELQGIHSFRHLGSQLCEMERLIDKMMVADFSSYA 375          
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: UPI0019C61E13 (vacuolar protein sorting-associated protein 54 n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI0019C61E13)

HSP 1 Score: 67.0 bits (162), Expect = 5.320e-9
Identity = 45/149 (30.20%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVS 465
            +S RS AFF  + +  +LQ  +  A           A R  RE  + M + +  GP+R  +    R N  AL   L+L+A VQQ+Q  +Q    LL+  +++GAL+++ + K  ++ EL  + S +++G QL E E+L+ +++   F +
Sbjct:  232 ISLRSEAFFHAMSSQHELQEQLCEAAA---------AVRALREHTAGMGRTMCQGPLRALRHAVTRKNCVALHGKLKLMAAVQQTQPTVQL---LLSTSEFVGALELINTTKEVLQQELQGIHSFRHLGSQLCEMEKLIDKMMVADFTT 368          
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A3F2S2L8_9STRA (Vacuolar protein sorting-associated protein 54 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S2L8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 9.440e-9
Identity = 53/244 (21.72%), Postives = 119/244 (48.77%), Query Frame = 1
Query:   19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLAVTTPVETGWEGGLIAAPEMTRDSESWEMGFETENGRADTSG-----ASGSRDELRRGLELVVQGLLRLGEMERVLGVVQERLSEDLKLIIRCV 735
            +S+RS+ FFE     + ++  +  AC  +  L         R++M R+   +    + I  L +R+  +  L   + +V  V+ +++A++A   L+  +DY GAL++++S+++ +++ L  +  L ++  +   Y   +S  +S RF+S              +I +PE       W    + E   AD SG     A+  +D +++  + +V  L RL  ++  +    ++L+E+++++++ V
Sbjct:  156 VSSRSDRFFEASADQEVMKQSIKVACDQVATL---------RKTMDRLRNLLADKTLDIVNLHQRQKRIKELHDLMAMVEEVKGAESAVEA---LVQCQDYTGALNLIESSQTILRDHLQGIHGLSSLSEKFRGYRAFISTQISQRFIS--------------VITSPE-------WTFHDDVEPSYADPSGKRKNSANNDKDNVQQETKCLVDVLFRLDALDNTVQTYLDQLNEEIRVVVKTV 366          
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A7K8X2L8_9PICI (VPS54 protein (Fragment) n=2 Tax=Ramphastidae TaxID=57381 RepID=A0A7K8X2L8_9PICI)

HSP 1 Score: 65.5 bits (158), Expect = 1.640e-8
Identity = 43/151 (28.48%), Postives = 83/151 (54.97%), Query Frame = 1
Query:   19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLA 471
            +S RS AFF  + +  +LQ ++          +  +A +  RE +S+++Q V  G +R+ +L   R N       L+L+A V Q+Q  +Q    LL+  +++GALD++ + +  ++ EL  + S +++G QL E E+L+ +++   F + A
Sbjct:  224 ISLRSEAFFHAMTSQHELQDYLR---------KTSQAVKLLREKISKIDQVVCEGSLRVLRLSLTRSNCIKAYNKLKLMATVHQTQPMVQL---LLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFAAYA 362          
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Match: A0A7K6AKZ6_UPUEP (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Upupa epops TaxID=57439 RepID=A0A7K6AKZ6_UPUEP)

HSP 1 Score: 64.3 bits (155), Expect = 4.260e-8
Identity = 42/151 (27.81%), Postives = 84/151 (55.63%), Query Frame = 1
Query:   19 LSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRESMSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQGLLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLSNRFVSLA 471
            +S RS AFF  + +  +LQ ++          +  +A +  RE +S+++Q +  G +R+ +L   R+N       L+L+A V Q+Q  +Q    LL+  +++GALD++ + +  ++ EL  + S +++G QL E E+L+ +++   F + A
Sbjct:  224 ISLRSEAFFHAMTSQHELQDYLR---------KTSQAVKLLREKISKIDQVMCEGSLRVLRLSLTRNNCIKAYNKLKLMATVHQTQPTVQL---LLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFSTYA 362          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80111.15669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KYH6_9PHAE4.200e-8667.05Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
D7G0A0_ECTSI3.550e-8366.17Vacuolar protein sorting-associated protein 54 n=1... [more]
A0A835YJU9_9STRA4.200e-3238.33Vacuolar protein sorting-associated protein 54 (Fr... [more]
A0A7S2BIV8_9STRA5.280e-1938.13Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W5U8J1_ICTPU3.940e-929.53Vacuolar protein sorting-associated protein 54 n=7... [more]
A0A553Q812_9TELE5.310e-930.46Vacuolar protein sorting-associated protein 54 n=2... [more]
UPI0019C61E135.320e-930.20vacuolar protein sorting-associated protein 54 n=1... [more]
A0A3F2S2L8_9STRA9.440e-921.72Vacuolar protein sorting-associated protein 54 n=3... [more]
A0A7K8X2L8_9PICI1.640e-828.48VPS54 protein (Fragment) n=2 Tax=Ramphastidae TaxI... [more]
A0A7K6AKZ6_UPUEP4.260e-827.81Vacuolar protein sorting-associated protein 54 (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80111contigH-elongata_contig80111:477..2728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.3
Seed ortholog evalue2.2e-73
Seed eggNOG ortholog2880.D7G0A0
Preferred nameVPS54
KEGG koko:K10357,ko:K17600
GOsGO:0000003,GO:0000138,GO:0000139,GO:0000149,GO:0000938,GO:0001675,GO:0001894,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005794,GO:0005795,GO:0005802,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006996,GO:0006997,GO:0007010,GO:0007034,GO:0007041,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0009272,GO:0009507,GO:0009536,GO:0009653,GO:0009987,GO:0010256,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019725,GO:0019905,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0030476,GO:0031090,GO:0031410,GO:0031505,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032588,GO:0032989,GO:0032991,GO:0033036,GO:0033363,GO:0034293,GO:0034613,GO:0040008,GO:0042147,GO:0042244,GO:0042546,GO:0042592,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043934,GO:0043935,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045103,GO:0045104,GO:0045184,GO:0045229,GO:0046907,GO:0048193,GO:0048232,GO:0048468,GO:0048471,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048873,GO:0048878,GO:0050789,GO:0050879,GO:0050881,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0055082,GO:0055088,GO:0060052,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070590,GO:0070591,GO:0070726,GO:0070727,GO:0070925,GO:0071554,GO:0071555,GO:0071702,GO:0071705,GO:0071840,GO:0071852,GO:0071940,GO:0090156,GO:0097708,GO:0098588,GO:0098791,GO:0099023,GO:1903046
EggNOG free text desc.Vacuolar protein sorting-associated protein
EggNOG OGsKOG2115@1,KOG2115@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03019,ko03029,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVps54-like protein
Ec32 orthologEc-14_005060.1
Exons4
Model size756
Cds size756
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80111.15669.1prot_H-elongata_contig80111.15669.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80111 477..2728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931207.4025285-CDS-H-elongata_contig80111:476..8251622931207.4025285-CDS-H-elongata_contig80111:476..825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80111 477..825 -
1691679741.8013961-CDS-H-elongata_contig80111:476..8251691679741.8013961-CDS-H-elongata_contig80111:476..825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80111 477..825 -
1622931207.433284-CDS-H-elongata_contig80111:1570..16851622931207.433284-CDS-H-elongata_contig80111:1570..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80111 1571..1685 -
1691679741.8143783-CDS-H-elongata_contig80111:1570..16851691679741.8143783-CDS-H-elongata_contig80111:1570..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80111 1571..1685 -
1622931207.4641283-CDS-H-elongata_contig80111:2286..24351622931207.4641283-CDS-H-elongata_contig80111:2286..2435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80111 2287..2435 -
1691679741.82505-CDS-H-elongata_contig80111:2286..24351691679741.82505-CDS-H-elongata_contig80111:2286..2435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80111 2287..2435 -
1622931207.4820251-CDS-H-elongata_contig80111:2585..27281622931207.4820251-CDS-H-elongata_contig80111:2585..2728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80111 2586..2728 -
1691679741.8361104-CDS-H-elongata_contig80111:2585..27281691679741.8361104-CDS-H-elongata_contig80111:2585..2728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80111 2586..2728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80111.15669.1

>prot_H-elongata_contig80111.15669.1 ID=prot_H-elongata_contig80111.15669.1|Name=mRNA_H-elongata_contig80111.15669.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
ICLTVCLSARSNAFFEGLKTSQDLQMHVTGACTTLYQLRQEEAYRTGRES
MSRMEQEVVAGPMRIPQLQRRRDNLAALEATLELVAGVQQSQAAIQAQQG
LLAAEDYLGALDILQSAKSTVKNELGKLQSLKNVGRQLAEYEELVSELLS
NRFVSLAVTTPVETGWEGGLIAAPEMTRDSESWEMGFETENGRADTSGAS
GSRDELRRGLELVVQGLLRLGEMERVLGVVQERLSEDLKLIIRCVPVYCV
R*
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mRNA from alignment at H-elongata_contig80111:477..2728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80111.15669.1 ID=mRNA_H-elongata_contig80111.15669.1|Name=mRNA_H-elongata_contig80111.15669.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2252bp|location=Sequence derived from alignment at H-elongata_contig80111:477..2728- (Himanthalia elongata Himel1 dioecious)
ATCTGTTTGACTGTATGCCTGTCGGCAAGGTCGAACGCGTTCTTTGAGGG GCTGAAGACTAGTCAAGATCTTCAGATGCATGTGACGGGGGCGTGCACGA CGTTATATCAGCTCAGGCAAGAAGAGGCATACAGGACGGGACGGTACAAG ACGAGACGAGACGTAGGAGAGTTCTTGATAGACAATTCGAAGATCCCCTG GCCGCTTCTCCCGTACACCAAGTCTTCGTCACCCGCCCTACCCTCCCCGG CGCCTCCCGCTTACCGCCCCCCGCCCTCCCGTGTGTTTCCCAGGGAATCG ATGTCGCGCATGGAGCAAGAGGTCGTCGCGGGTCCAATGCGCATCCCCCA GCTGCAGAGGCGAAGGGACAATCTCGCGGCCCTGGAGGCGACGCTGGAGC TCGTCGCCGGGGTGCAACAGTCGCAGGCGGCCATACAGGCACGTCGTCGT ACATAGTACTCTGTTTTTTTTCTCTCTATATATATACAGAAATATATATA TATATATATATATATATATAACTTCTCTAGCAATCCATGCGATACAAGTA AATGTGTCGTAATCGACTGGAGCATACCACGGTACACTCTGGAGAGGGGA TATAGTCCACTATATCTGTGTCAGGGGGACACCATCTATTTTGTAATGTT GTCAGAGAAAGAGAACGAGAGAAAGAGCATGTCGCGGTCGCTGTCGCAGC CGTGGCTTGAGAAGATCTTGCCAATATATTTCCCAGTATCGCCCGATGCA GCCTTTTTGTGTCGAGGAAATGAAAAGAGGGGATATGATATATATATATA TATTCCCCGGGGTTTGTTCTGTTCTGCATCGAAGGATCAGACAATACCTG GAGATACCTCTCTGCAGAAGCTTTGTCGGTCTCGAAAGCTTGCAAACCCT AACTTCGAGGTCCTCGCTCGAGGGACGAGATATTTTGGGTGTGTTCCATG CGGCGGCGAGGTGCCCTCAACAGCACGGCGCTTTTCCCAAGCTTTGTAAC GTTGTGCTGGCGATCACCACCGCGTCGATTGTCGTCTCGAAAGAGCAGGG CTTGCTCGCGGCCGAGGACTACTTGGGAGCCCTGGACATCCTCCAGTCCG CGAAATCTACCGTGAAGAACGAGCTCGGGAAGCTGCAGAGCCTGAAAAAC GTCGGAAGGTATGACGACAAGAACAAGAGTCCCACGGCATCGATCGATCG ATTGCCTAATTAAGGGGATTTCGAGAGGTGGATTCGCTACAATATCGTCT CCATCCCCCTTAGTGTCCCCCTTAGTATCGCCAACCACCCCGGAACAGCC CCTGTTTATCAGTGCCTCGCCAGATACACAACGCATGCCCACCCTCTCTA AAGGTGTTTGACCTTGTTTGGGAGGCGACAAAATCTAGCGGTGGTACCTT TGCCGTTGTGATGTGGCTCATTCCCGTGGGATGGATATCTACACTTGTTA AGGAGGCGTGGTGGAACAGGGGCATGGGGATGTGGGAGGGGCGGGGGGAA AAAGAGAGAGAAAGAAGGATATAAGTGTATGAAAGAGGGAGCAGGGTGAG GCCGTAATCGTTTTGTGATACCTCCGTGCGAGGGTAGCCTAGAAGGACGG CATGGGCATGACAGAGCCGGATTGCGCGGTTATGTGCAATTTCATAAATA CATATAAATACACAAACACACTCACGTGTGTGTGCGAGGGCTTTTACATG AGAACTGTAGAGATAATATGCCCCCTTTTGCCGGCTCTGATCTGAGGTTT TCGTAACAAATAGATGAGTGATCCCTCCTTGATAGGGCCAAGCGAGTACG TTATTATTAGTATACAATGGCTAGCATGAGAGGGCCGGATTGCGCGATTA CGTGCAACTTTTAATACCTACAAACACAAATACAAACACATAAATTCTAT CAGGCAACTCGCGGAGTACGAGGAGCTCGTGTCCGAACTCCTCAGCAACC GGTTCGTGAGCCTAGCGGTTACAACACCGGTGGAGACTGGATGGGAAGGA GGACTAATAGCAGCACCAGAAATGACGCGCGATTCTGAGTCCTGGGAGAT GGGGTTCGAGACGGAGAACGGGAGGGCGGATACGAGTGGGGCGAGCGGCA GCAGGGATGAGCTCCGACGGGGTCTGGAGCTCGTGGTGCAGGGGTTGTTG AGACTGGGAGAGATGGAGAGGGTGCTCGGAGTCGTCCAGGAGCGGTTGTC AGAGGACCTTAAGCTTATCATCAGGTGCGTACCGGTGTATTGTGTTAGAT AG
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Coding sequence (CDS) from alignment at H-elongata_contig80111:477..2728-

>mRNA_H-elongata_contig80111.15669.1 ID=mRNA_H-elongata_contig80111.15669.1|Name=mRNA_H-elongata_contig80111.15669.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig80111:477..2728- (Himanthalia elongata Himel1 dioecious)
ATCTGTTTGACTGTATGCCTGTCGGCAAGGTCGAACGCGTTCTTTGAGGG
GCTGAAGACTAGTCAAGATCTTCAGATGCATGTGACGGGGGCGTGCACGA
CGTTATATCAGCTCAGGCAAGAAGAGGCATACAGGACGGGACGATCTGTT
TGACTGTATGCCTGTCGGCAAGGTCGAACGCGTTCTTTGAGGGGCTGAAG
ACTAGTCAAGATCTTCAGATGCATGTGACGGGGGCGTGCACGACGTTATA
TCAGCTCAGGCAAGAAGAGGCATACAGGACGGGACGGGAATCGATGTCGC
GCATGGAGCAAGAGGTCGTCGCGGGTCCAATGCGCATCCCCCAGCTGCAG
AGGCGAAGGGACAATCTCGCGGCCCTGGAGGCGACGCTGGAGCTCGTCGC
CGGGGTGCAACAGTCGCAGGCGGCCATACAGGCACGGAATCGATGTCGCG
CATGGAGCAAGAGGTCGTCGCGGGTCCAATGCGCATCCCCCAGCTGCAGA
GGCGAAGGGACAATCTCGCGGCCCTGGAGGCGACGCTGGAGCTCGTCGCC
GGGGTGCAACAGTCGCAGGCGGCCATACAGGCACAGCAGGGCTTGCTCGC
GGCCGAGGACTACTTGGGAGCCCTGGACATCCTCCAGTCCGCGAAATCTA
CCGTGAAGAACGAGCTCGGGAAGCTGCAGAGCCTGAAAAACGTCGGAAGA
GCAGGGCTTGCTCGCGGCCGAGGACTACTTGGGAGCCCTGGACATCCTCC
AGTCCGCGAAATCTACCGTGAAGAACGAGCTCGGGAAGCTGCAGAGCCTG
AAAAACGTCGGAAGGCAACTCGCGGAGTACGAGGAGCTCGTGTCCGAACT
CCTCAGCAACCGGTTCGTGAGCCTAGCGGTTACAACACCGGTGGAGACTG
GATGGGAAGGAGGACTAATAGCAGCACCAGAAATGACGCGCGATTCTGAG
TCCTGGGAGATGGGGTTCGAGACGGAGAACGGGAGGGCGGATACGAGTGG
GGCGAGCGGCAGCAGGGATGAGCTCCGACGGGGTCTGGAGCTCGTGGTGC
AGGGGTTGTTGAGACTGGGAGAGATGGAGAGGGTGCTCGGAGTCGTCCAG
GAGCGGTTGTCAGAGGACCTTAAGCTTATCATCAGGTGCGTACCGGTGTA
TTGTGTTAGATAGGCAACTCGCGGAGTACGAGGAGCTCGTGTCCGAACTC
CTCAGCAACCGGTTCGTGAGCCTAGCGGTTACAACACCGGTGGAGACTGG
ATGGGAAGGAGGACTAATAGCAGCACCAGAAATGACGCGCGATTCTGAGT
CCTGGGAGATGGGGTTCGAGACGGAGAACGGGAGGGCGGATACGAGTGGG
GCGAGCGGCAGCAGGGATGAGCTCCGACGGGGTCTGGAGCTCGTGGTGCA
GGGGTTGTTGAGACTGGGAGAGATGGAGAGGGTGCTCGGAGTCGTCCAGG
AGCGGTTGTCAGAGGACCTTAAGCTTATCATCAGGTGCGTACCGGTGTAT
TGTGTTAGATAG
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