prot_H-elongata_contig80084.15668.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80084.15668.1
Unique Nameprot_H-elongata_contig80084.15668.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length94
Homology
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.250e-15
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 0
Query:   15 WIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 94
            WIGDS ++ H T+D + +YN R P   +  +   DG +L+ EC G++DVVFH R D  +T+ D++ VPDL F+L S + +
Sbjct:   16 WIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVI 95          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.190e-11
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 0
Query:   14 FWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFH-----GRSDEPITLCDVSHVPDLKFNLFSFH 92
            FW  DSGA+    + + +M+++R  P GK  +   +GT LR++C+G +++ FH     G  D  + + DV  VP + FNLFS H
Sbjct:  640 FWA-DSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLH 722          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A834U2Q9_9FABA (F-box protein interaction domain protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834U2Q9_9FABA)

HSP 1 Score: 57.4 bits (137), Expect = 1.630e-7
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 0
Query:   12 NDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 94
            ND WI DSGAS HMT +AS +++   P     +V  +DGT  ++  IG++ +       + ITL +V HVP L  NL S  KL
Sbjct:   92 NDSWIVDSGASDHMTGNAS-LFSTLGPCKTSLQVKIADGTMAKVLGIGSVKI------SDTITLLNVLHVPTLACNLLSISKL 167          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A2I0VFZ4_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VFZ4_9ASPA)

HSP 1 Score: 57.0 bits (136), Expect = 2.220e-7
Identity = 32/93 (34.41%), Postives = 46/93 (49.46%), Query Frame = 0
Query:    2 AFAAQSQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 94
            A  A S  A N+ W  DSGAS H+TN    + ++ +P  G   +   DG  + I   G   +    R    +TL  + H+P+LK+NL S  KL
Sbjct:  306 AMVAASDSATNNNWFLDSGASAHLTNSLDNL-SIASPYQGSDSITIGDGRSMSIANSGTGSLPIPARK---LTLDQILHIPELKYNLLSISKL 394          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A835CFI5_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A835CFI5_9FABA)

HSP 1 Score: 55.8 bits (133), Expect = 5.570e-7
Identity = 33/92 (35.87%), Postives = 50/92 (54.35%), Query Frame = 0
Query:    2 AFAAQSQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHK 93
            A  A  +  ++  W  DSGAS H+TNDAS +  VR P  G+  V T++GT L I+ +G  ++     + + + L  + HVP +  NL S  K
Sbjct:  297 ALLANPETLYDASWYPDSGASSHLTNDASNL-QVRQPYNGQELVHTANGTGLPIQSVGYSNI--SSSNSQILHLSQLYHVPSVSKNLISVSK 385          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A834WYN7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WYN7_9FABA)

HSP 1 Score: 55.5 bits (132), Expect = 7.470e-7
Identity = 32/92 (34.78%), Postives = 52/92 (56.52%), Query Frame = 0
Query:    2 AFAAQSQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHK 93
            A  A  +  ++  W  DSGAS H+TNDAS +++ + P  G  +V  ++GT L I  +G  ++  H  S + ++L ++ HVP +  NL S  K
Sbjct:  309 ALVAAPETLYDAAWYPDSGASHHITNDASNLHSHQ-PYTGSEQVHAANGTGLVIHNVGQSEI--HTNSSKILSLKNLFHVPSVTKNLLSVSK 397          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A336MT82_CULSO (CSON006917 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336MT82_CULSO)

HSP 1 Score: 55.5 bits (132), Expect = 7.490e-7
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 0
Query:   15 WIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLC--DVSHVPDLKFNLFSFHKL 94
            W  DSGAS HM ND     ++++    K  ++ +DG +L    IG++ +     SD+ + +   DV HVP+LK NL S HKL
Sbjct:  271 WFVDSGASNHMCNDEKVFQSLKSTSESK--IILADGDKLVSNNIGDVKLSLKTNSDDMMNVLIKDVLHVPNLKGNLISVHKL 350          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A336N465_CULSO (CSON011514 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336N465_CULSO)

HSP 1 Score: 55.5 bits (132), Expect = 7.700e-7
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 0
Query:   15 WIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLC--DVSHVPDLKFNLFSFHKL 94
            W  DSGAS HM ND     ++++    K  ++ +DG +L    IG++ +     SD+ + +   DV HVP+LK NL S HKL
Sbjct:  271 WFVDSGASNHMCNDEKVFQSLKSTSESK--IILADGDKLVSNNIGDVKLSLKTNSDDMMNVLIKDVLHVPNLKGNLISVHKL 350          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A803LD36_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LD36_CHEQI)

HSP 1 Score: 54.7 bits (130), Expect = 1.370e-6
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 0
Query:   13 DFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 94
            D W+ DSGA+ H+ +D + ++   TP    + +   DG+R+ ++  G + +      ++ I+L +V HVPD KFNL S HKL
Sbjct:  275 DKWLLDSGATDHIFSDIA-LFAKLTPVLTPYYITIPDGSRILVKNTGVVKL------NDEISLLNVLHVPDFKFNLISVHKL 349          
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A834SY91_9FABA (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834SY91_9FABA)

HSP 1 Score: 53.9 bits (128), Expect = 2.630e-6
Identity = 32/83 (38.55%), Postives = 47/83 (56.63%), Query Frame = 0
Query:   12 NDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 94
            ND WI DSGAS HMT +AS +++   P      V  ++GT +++  IG++ +  +      +TL +V HVP L  NL S  KL
Sbjct:  358 NDSWIIDSGASDHMTGNAS-LFSDLAPCTTSLLVKIANGTMVKVSSIGSVKITNN------LTLLNVLHVPTLTCNLLSVSKL 433          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE4.250e-1542.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3I1_9PHAE9.190e-1136.90Integrase catalytic domain-containing protein n=5 ... [more]
A0A834U2Q9_9FABA1.630e-740.96F-box protein interaction domain protein n=1 Tax=S... [more]
A0A2I0VFZ4_9ASPA2.220e-734.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A835CFI5_9FABA5.570e-735.87Retrovirus-related Pol polyprotein from transposon... [more]
A0A834WYN7_9FABA7.470e-734.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A336MT82_CULSO7.490e-737.80CSON006917 protein n=1 Tax=Culicoides sonorensis T... [more]
A0A336N465_CULSO7.700e-737.80CSON011514 protein n=1 Tax=Culicoides sonorensis T... [more]
A0A803LD36_CHEQI1.370e-635.37Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
A0A834SY91_9FABA2.630e-638.55Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80084contigH-elongata_contig80084:1732..2013 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80084.15668.1mRNA_H-elongata_contig80084.15668.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80084 1732..2031 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80084.15668.1 ID=prot_H-elongata_contig80084.15668.1|Name=mRNA_H-elongata_contig80084.15668.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MAFAAQSQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDG
TRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL
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