mRNA_H-elongata_contig80084.15668.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 7.320e-15 Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 61 WIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 300
WIGDS ++ H T+D + +YN R P + + DG +L+ EC G++DVVFH R D +T+ D++ VPDL F+L S + +
Sbjct: 16 WIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVI 95
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 4.540e-11 Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = 1
Query: 16 GMAFAAQ---SQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFH-----GRSDEPITLCDVSHVPDLKFNLFSFH 294
G A +AQ S+ FW DSGA+ + + +M+++R P GK + +GT LR++C+G +++ FH G D + + DV VP + FNLFS H
Sbjct: 623 GFALSAQNPLSRFGREKFWA-DSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLH 722
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A834U2Q9_9FABA (F-box protein interaction domain protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834U2Q9_9FABA) HSP 1 Score: 56.6 bits (135), Expect = 3.800e-7 Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 52 NDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 300
ND WI DSGAS HMT +AS +++ P +V +DGT ++ IG++ + + ITL +V HVP L NL S KL
Sbjct: 92 NDSWIVDSGASDHMTGNAS-LFSTLGPCKTSLQVKIADGTMAKVLGIGSVKI------SDTITLLNVLHVPTLACNLLSISKL 167
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A2I0VFZ4_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VFZ4_9ASPA) HSP 1 Score: 56.2 bits (134), Expect = 5.160e-7 Identity = 32/93 (34.41%), Postives = 46/93 (49.46%), Query Frame = 1
Query: 22 AFAAQSQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 300
A A S A N+ W DSGAS H+TN + ++ +P G + DG + I G + R +TL + H+P+LK+NL S KL
Sbjct: 306 AMVAASDSATNNNWFLDSGASAHLTNSLDNL-SIASPYQGSDSITIGDGRSMSIANSGTGSLPIPARK---LTLDQILHIPELKYNLLSISKL 394
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A336MT82_CULSO (CSON006917 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336MT82_CULSO) HSP 1 Score: 55.1 bits (131), Expect = 1.270e-6 Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 61 WIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLC--DVSHVPDLKFNLFSFHKL 300
W DSGAS HM ND ++++ K ++ +DG +L IG++ + SD+ + + DV HVP+LK NL S HKL
Sbjct: 271 WFVDSGASNHMCNDEKVFQSLKSTSESK--IILADGDKLVSNNIGDVKLSLKTNSDDMMNVLIKDVLHVPNLKGNLISVHKL 350
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A835CFI5_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A835CFI5_9FABA) HSP 1 Score: 55.1 bits (131), Expect = 1.290e-6 Identity = 33/92 (35.87%), Postives = 50/92 (54.35%), Query Frame = 1
Query: 22 AFAAQSQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHK 297
A A + ++ W DSGAS H+TNDAS + VR P G+ V T++GT L I+ +G ++ + + + L + HVP + NL S K
Sbjct: 297 ALLANPETLYDASWYPDSGASSHLTNDASNL-QVRQPYNGQELVHTANGTGLPIQSVGYSNI--SSSNSQILHLSQLYHVPSVSKNLISVSK 385
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A336N465_CULSO (CSON011514 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336N465_CULSO) HSP 1 Score: 55.1 bits (131), Expect = 1.310e-6 Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 61 WIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLC--DVSHVPDLKFNLFSFHKL 300
W DSGAS HM ND ++++ K ++ +DG +L IG++ + SD+ + + DV HVP+LK NL S HKL
Sbjct: 271 WFVDSGASNHMCNDEKVFQSLKSTSESK--IILADGDKLVSNNIGDVKLSLKTNSDDMMNVLIKDVLHVPNLKGNLISVHKL 350
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A834WYN7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WYN7_9FABA) HSP 1 Score: 54.7 bits (130), Expect = 1.730e-6 Identity = 32/92 (34.78%), Postives = 52/92 (56.52%), Query Frame = 1
Query: 22 AFAAQSQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHK 297
A A + ++ W DSGAS H+TNDAS +++ + P G +V ++GT L I +G ++ H S + ++L ++ HVP + NL S K
Sbjct: 309 ALVAAPETLYDAAWYPDSGASHHITNDASNLHSHQ-PYTGSEQVHAANGTGLVIHNVGQSEI--HTNSSKILSLKNLFHVPSVTKNLLSVSK 397
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A803LD36_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LD36_CHEQI) HSP 1 Score: 53.9 bits (128), Expect = 3.160e-6 Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 55 DFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 300
D W+ DSGA+ H+ +D + ++ TP + + DG+R+ ++ G + + ++ I+L +V HVPD KFNL S HKL
Sbjct: 275 DKWLLDSGATDHIFSDIA-LFAKLTPVLTPYYITIPDGSRILVKNTGVVKL------NDEISLLNVLHVPDFKFNLISVHKL 349
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Match: A0A834T3C8_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834T3C8_9FABA) HSP 1 Score: 53.1 bits (126), Expect = 5.630e-6 Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 1
Query: 61 WIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGTRLRIECIGNIDVVFHGRSDEPITLCDVSHVPDLKFNLFSFHKL 300
WI DSGAS HMT +AS +++ P +V +DGT ++ IG+I + +TL +V +VP L NL S KL
Sbjct: 74 WIVDSGASDHMTGNAS-LFSTLAPCASSLQVKIADGTMAKVSAIGSIKI------STTLTLMNVLYVPALACNLLSISKL 146 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80084.15668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80084.15668.1 >prot_H-elongata_contig80084.15668.1 ID=prot_H-elongata_contig80084.15668.1|Name=mRNA_H-elongata_contig80084.15668.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp MAFAAQSQDAHNDFWIGDSGASCHMTNDASKMYNVRTPPFGKHEVMTSDGback to top mRNA from alignment at H-elongata_contig80084:1732..2031- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80084.15668.1 ID=mRNA_H-elongata_contig80084.15668.1|Name=mRNA_H-elongata_contig80084.15668.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig80084:1732..2031- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80084:1732..2031- >mRNA_H-elongata_contig80084.15668.1 ID=mRNA_H-elongata_contig80084.15668.1|Name=mRNA_H-elongata_contig80084.15668.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig80084:1732..2031- (Himanthalia elongata Himel1 dioecious)back to top |