mRNA_H-elongata_contig80064.15664.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80064.15664.1
Unique NamemRNA_H-elongata_contig80064.15664.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig80064.15664.1 vs. uniprot
Match: D7FYV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYV8_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 5.640e-50
Identity = 92/146 (63.01%), Postives = 114/146 (78.08%), Query Frame = 1 
Query:   34 QKGASALRALADELKTEQAISSYANKVADELAQIFEVEEEKAAKQIEKRKVPVKAKLEKATVELEEAMADAEEARRAFEGDLLLQLFSFRSKGPLRQGALVGAITMANQAVYQLILLVDDRGGSLTIALVGSVASAALVWFYGYRP 471
            +KG SALR LA+ELKT++   SYA+++A ELA++ +VEE+KAA +IE+R+ PVKAKL+KAT      +A AEEARR FEGD +LQL SFR KG LRQ A VGA+ +ANQAVYQ IL+ DDRGG+   AL G  ASAALVW+YGYRP
Sbjct:  202 EKGTSALRELAEELKTDEGAVSYADRMAQELAELLQVEEDKAAAEIERRQAPVKAKLDKATXXXXXXVAAAEEARREFEGDFVLQLMSFRQKGVLRQAAFVGAVLIANQAVYQAILVADDRGGNPAFALGGLAASAALVWYYGYRP 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80064.15664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYV8_ECTSI5.640e-5063.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80064contigH-elongata_contig80064:248..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002650.1
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size486
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931206.9082575-CDS-H-elongata_contig80064:247..7331622931206.9082575-CDS-H-elongata_contig80064:247..733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80064 248..733 +
1691679741.523695-CDS-H-elongata_contig80064:247..7331691679741.523695-CDS-H-elongata_contig80064:247..733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80064 248..733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80064.15664.1prot_H-elongata_contig80064.15664.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80064 248..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80064.15664.1

>prot_H-elongata_contig80064.15664.1 ID=prot_H-elongata_contig80064.15664.1|Name=mRNA_H-elongata_contig80064.15664.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MRAPPSVPWEPQKGASALRALADELKTEQAISSYANKVADELAQIFEVEE
EKAAKQIEKRKVPVKAKLEKATVELEEAMADAEEARRAFEGDLLLQLFSF
RSKGPLRQGALVGAITMANQAVYQLILLVDDRGGSLTIALVGSVASAALV
WFYGYRPFSLK*
back to top

mRNA from alignment at H-elongata_contig80064:248..733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80064.15664.1 ID=mRNA_H-elongata_contig80064.15664.1|Name=mRNA_H-elongata_contig80064.15664.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig80064:248..733+ (Himanthalia elongata Himel1 dioecious)
ATGCGCGCACCACCGTCTGTACCGTGGGAACCGCAGAAAGGGGCGTCTGC
CTTGAGAGCTCTGGCGGACGAGCTGAAAACAGAGCAGGCAATATCTTCCT
ACGCGAACAAAGTGGCCGACGAGCTGGCCCAGATATTTGAAGTTGAAGAA
GAAAAGGCGGCAAAACAAATTGAAAAGCGCAAGGTTCCTGTGAAAGCAAA
GCTCGAAAAAGCGACGGTCGAGCTGGAAGAGGCAATGGCAGACGCGGAGG
AAGCGCGACGAGCGTTCGAAGGGGACTTGTTGCTTCAACTATTTAGCTTC
AGATCGAAGGGGCCGCTAAGGCAGGGAGCGTTAGTTGGGGCTATTACGAT
GGCCAACCAGGCTGTGTATCAGCTGATATTGTTGGTAGATGATAGAGGAG
GGAGTCTGACTATTGCCCTGGTAGGATCCGTAGCGTCGGCAGCGTTGGTG
TGGTTTTACGGATATAGACCATTCTCCCTGAAATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig80064:248..733+

>mRNA_H-elongata_contig80064.15664.1 ID=mRNA_H-elongata_contig80064.15664.1|Name=mRNA_H-elongata_contig80064.15664.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig80064:248..733+ (Himanthalia elongata Himel1 dioecious)
ATGCGCGCACCACCGTCTGTACCGTGGGAACCGCAGAAAGGGGCGTCTGC
CTTGAGAGCTCTGGCGGACGAGCTGAAAACAGAGCAGGCAATATCTTCCT
ACGCGAACAAAGTGGCCGACGAGCTGGCCCAGATATTTGAAGTTGAAGAA
GAAAAGGCGGCAAAACAAATTGAAAAGCGCAAGGTTCCTGTGAAAGCAAA
GCTCGAAAAAGCGACGGTCGAGCTGGAAGAGGCAATGGCAGACGCGGAGG
AAGCGCGACGAGCGTTCGAAGGGGACTTGTTGCTTCAACTATTTAGCTTC
AGATCGAAGGGGCCGCTAAGGCAGGGAGCGTTAGTTGGGGCTATTACGAT
GGCCAACCAGGCTGTGTATCAGCTGATATTGTTGGTAGATGATAGAGGAG
GGAGTCTGACTATTGCCCTGGTAGGATCCGTAGCGTCGGCAGCGTTGGTG
TGGTTTTACGGATATAGACCATTCTCCCTGAAATAAATGCGCGCACCACC
GTCTGTACCGTGGGAACCGCAGAAAGGGGCGTCTGCCTTGAGAGCTCTGG
CGGACGAGCTGAAAACAGAGCAGGCAATATCTTCCTACGCGAACAAAGTG
GCCGACGAGCTGGCCCAGATATTTGAAGTTGAAGAAGAAAAGGCGGCAAA
ACAAATTGAAAAGCGCAAGGTTCCTGTGAAAGCAAAGCTCGAAAAAGCGA
CGGTCGAGCTGGAAGAGGCAATGGCAGACGCGGAGGAAGCGCGACGAGCG
TTCGAAGGGGACTTGTTGCTTCAACTATTTAGCTTCAGATCGAAGGGGCC
GCTAAGGCAGGGAGCGTTAGTTGGGGCTATTACGATGGCCAACCAGGCTG
TGTATCAGCTGATATTGTTGGTAGATGATAGAGGAGGGAGTCTGACTATT
GCCCTGGTAGGATCCGTAGCGTCGGCAGCGTTGGTGTGGTTTTACGGATA
TAGACCATTCTCCCTGAAATAA
back to top