prot_H-elongata_contig80016.15660.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80016.15660.1
Unique Nameprot_H-elongata_contig80016.15660.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length234
Homology
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: Q2TUL2_FUCVE (Ribosomal protein L6 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUL2_FUCVE)

HSP 1 Score: 204 bits (519), Expect = 1.350e-63
Identity = 102/151 (67.55%), Postives = 121/151 (80.13%), Query Frame = 0
Query:   82 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVL 232
            +YRLP  V+C SNQGKVRISGP GVV F S SK++RKGN+LIFLP LT YYSSIFTQ VLGV LGY+IEL+LKGIGYRV KE G+LI +LGYSH + L IP++I V   KK FSL+S+NYG LQN+  KIRSYR P+ YKG  V+Y NE++
Sbjct:    5 MYRLPVGVDCLSNQGKVRISGPCGVVVFDSSSKLYRKGNILIFLPELTKYYSSIFTQAVLGVVLGYTIELNLKGIGYRVSKEKGELILHLGYSHSIILEIPKEITVTLDKKIFSLMSANYGLLQNFATKIRSYRLPDSYKGAGVLYNNEIV 155          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: Q2TUH0_9PHAE (Ribosomal protein L6 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUH0_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 3.860e-63
Identity = 100/152 (65.79%), Postives = 121/152 (79.61%), Query Frame = 0
Query:   82 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV 233
            V+RLP  V C+S+ GKVR+SG  G+V F S S +HRKGNM+IFLPYLTPYYSSIFTQ VLGV LGY+IEL LKGIGYRV +E GKLIF+LGYS  + LTIPE I VK  KKTF L S+N+G LQN+   IR +RFP+PYKGG ++Y +E++V
Sbjct:    5 VFRLPIGVECTSSSGKVRVSGARGLVIFDSVSNLHRKGNMVIFLPYLTPYYSSIFTQAVLGVILGYTIELKLKGIGYRVREEKGKLIFSLGYSRPIILTIPEAISVKFNKKTFLLRSANFGLLQNFATTIRRFRFPDPYKGGGILYDSEIIV 156          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A1L2F1G5_9PHAE (Ribosomal protein L6 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1G5_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.210e-62
Identity = 96/152 (63.16%), Postives = 121/152 (79.61%), Query Frame = 0
Query:   82 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV 233
            VYRLP  VNC SN GKV +SG +G V+F S SKI+RKGN ++FLPYLT YYSSIFTQ VLGV LGY+IEL LKGIGY+V+K   KLIF+LG+SH +S+ IPE + V+  KKTFSL+S+N+G LQN+   IR+YRFP+ YKG  V+Y NE+++
Sbjct:    5 VYRLPIGVNCLSNNGKVYVSGSFGFVTFDSASKIYRKGNTIVFLPYLTSYYSSIFTQAVLGVVLGYTIELILKGIGYKVYKANDKLIFSLGFSHTISIRIPEGVSVRFNKKTFSLMSANFGLLQNFATSIRAYRFPDTYKGAGVVYMNEIVI 156          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: E6ZEQ4_ECTSI (Ribosomal protein L6 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZEQ4_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 3.140e-62
Identity = 102/152 (67.11%), Postives = 119/152 (78.29%), Query Frame = 0
Query:   82 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV 233
            V+RLP  V CSSN GKV +SG  G V F S S +HRKG+M+IFLPYLTPYYSSIF Q V GV LGY+IELSLKGIGYRV KE  KLIF+LGYS  V L IP+DI ++  KKTFSLIS+NYGTLQN+   IRSYRFP+ YKG  V+Y +E++V
Sbjct:    5 VFRLPIGVKCSSNNGKVYVSGNKGRVVFDSVSNLHRKGDMVIFLPYLTPYYSSIFRQAVQGVVLGYTIELSLKGIGYRVRKEEEKLIFSLGYSKPVILDIPKDISIRFNKKTFSLISANYGTLQNFASSIRSYRFPDSYKGAGVLYADEIIV 156          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A068LGK5_9PHAE (Ribosomal protein L6 n=3 Tax=Sargassum TaxID=3015 RepID=A0A068LGK5_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 6.310e-62
Identity = 96/151 (63.58%), Postives = 118/151 (78.15%), Query Frame = 0
Query:   82 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVL 232
            VYRLP  VNC SN GKV + GP G+V F   SKIHRKGNM++FLPYLTPYYSSIFTQ VLGV LGYS+EL LKG+GY+V+K   KLIF LG+SH +S+ IP+ ++V+  KKT SL+SSN G LQN+   IR+YRFP+ YKG  V+Y NE++
Sbjct:    5 VYRLPIGVNCLSNNGKVSVLGPRGIVDFDCVSKIHRKGNMIVFLPYLTPYYSSIFTQAVLGVILGYSMELILKGVGYKVYKFNKKLIFALGFSHSISIDIPDGVLVRFNKKTLSLMSSNLGLLQNFTTSIRAYRFPDSYKGAGVVYVNEMV 155          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A1L1ZK56_9PHAE (Ribosomal protein L6 n=10 Tax=Sargassaceae TaxID=3014 RepID=A0A1L1ZK56_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 5.120e-61
Identity = 97/151 (64.24%), Postives = 118/151 (78.15%), Query Frame = 0
Query:   82 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVL 232
            VYRLP  VNC SN GKV + GP GVV F   SKI+RKGNM++FLPYLTPYYSSIFTQ VLGV LGYS+EL LKGIGY+V+K   KLIF LG+SH VS+ IPE + V+  KKT SL+S+++G LQN+   IR+YRFP+ YKG  V+Y NE++
Sbjct:    5 VYRLPIGVNCLSNNGKVYVLGPCGVVDFDCVSKIYRKGNMVVFLPYLTPYYSSIFTQAVLGVVLGYSLELVLKGIGYKVYKSNEKLIFTLGFSHSVSIDIPEGVFVRFNKKTLSLMSADFGLLQNFTTGIRAYRFPDCYKGAGVVYINEIV 155          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A0G2RKW1_TUROR (Ribosomal protein L6 n=1 Tax=Turbinaria ornata TaxID=86657 RepID=A0A0G2RKW1_TUROR)

HSP 1 Score: 197 bits (500), Expect = 1.030e-60
Identity = 95/152 (62.50%), Postives = 119/152 (78.29%), Query Frame = 0
Query:   82 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV 233
            +YRLP  V C SN GKV +SGP GVVSF   SKI+RKGNM+IFLPYLT Y SSIFTQ VLGV LGYS+EL LKGIGY+V+K   KLIF+LG+SH + + IP+ ++V+  KKTFSL+S+N+G LQN+   IR YRFP+ YKG  V+Y NE+++
Sbjct:    5 IYRLPIGVTCLSNNGKVYVSGPCGVVSFDCVSKIYRKGNMIIFLPYLTSYDSSIFTQAVLGVVLGYSVELILKGIGYKVYKSDEKLIFSLGFSHSIFIDIPKGVLVRFNKKTFSLVSANFGLLQNFATSIRRYRFPDSYKGAGVVYANEIVI 156          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A8F0FCE9_9PHAE (Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FCE9_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 2.070e-60
Identity = 97/152 (63.82%), Postives = 120/152 (78.95%), Query Frame = 0
Query:   82 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV 233
            V+RLP  V+CSSN+GKVR+SG  G+V+F S S ++RKGNM+IFLPYLTPY SSIF Q + GV LGY+IEL LKGIGYRV +E  KLIF+LGYS  V L IP+D+ VK  K+TFSL+S+NYG LQN+   IR YRFP+ YKG  V+Y NE++V
Sbjct:    5 VFRLPIGVSCSSNKGKVRVSGCCGMVTFDSISNLYRKGNMVIFLPYLTPYESSIFKQAIYGVVLGYTIELRLKGIGYRVREEDNKLIFSLGYSRPVLLNIPKDVEVKFSKRTFSLMSANYGVLQNFATTIRRYRFPDSYKGAGVLYENEIIV 156          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A3G5FPP9_9PHAE (Ribosomal protein L6 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPP9_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 2.070e-60
Identity = 99/152 (65.13%), Postives = 116/152 (76.32%), Query Frame = 0
Query:   82 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV 233
            VYRLP  V CSS  GKVR+SG  G V F S S ++RKGNM+IFLPYLTPYYSSIF Q V GV LGY+IELSLKGIGYRV +E  KLIF+LGYS  V L +P+DI VK  KKTFSL+S+NYG LQN+   IRSYRFP+ YK   V+Y  E+++
Sbjct:    5 VYRLPIGVECSSKNGKVRVSGSNGTVVFNSVSNLYRKGNMVIFLPYLTPYYSSIFRQAVQGVVLGYTIELSLKGIGYRVREEDKKLIFSLGYSKPVILNMPDDISVKFNKKTFSLLSANYGVLQNFATTIRSYRFPDSYKASGVLYIGEIVI 156          
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A0U1WNM4_SARFS (Ribosomal protein L6 n=1 Tax=Sargassum fusiforme TaxID=590727 RepID=A0A0U1WNM4_SARFS)

HSP 1 Score: 194 bits (492), Expect = 1.680e-59
Identity = 93/151 (61.59%), Postives = 115/151 (76.16%), Query Frame = 0
Query:   82 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVL 232
            +YRLP  VNC SN GKV +SGP GVV F   SKI+RKGNM++FLPYL+ YYSSIF Q VLGV LGYS+EL LKGIGY+ +K   KLIF LG+SH +S+ IPE + V+  KKT SLIS+N G LQN+   IR+YRFP+ YKG  ++Y NE++
Sbjct:    5 IYRLPIGVNCLSNNGKVFVSGPCGVVDFYCVSKIYRKGNMIVFLPYLSSYYSSIFIQAVLGVVLGYSVELVLKGIGYKAYKSDEKLIFTLGFSHSISIDIPEGVFVRLNKKTLSLISANLGLLQNFTTSIRAYRFPDSYKGAGIVYVNEIV 155          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2TUL2_FUCVE1.350e-6367.55Ribosomal protein L6 n=3 Tax=Fucus TaxID=3011 RepI... [more]
Q2TUH0_9PHAE3.860e-6365.79Ribosomal protein L6 n=2 Tax=Desmarestia TaxID=313... [more]
A0A1L2F1G5_9PHAE2.210e-6263.16Ribosomal protein L6 n=1 Tax=Coccophora langsdorfi... [more]
E6ZEQ4_ECTSI3.140e-6267.11Ribosomal protein L6 n=2 Tax=Ectocarpus siliculosu... [more]
A0A068LGK5_9PHAE6.310e-6263.58Ribosomal protein L6 n=3 Tax=Sargassum TaxID=3015 ... [more]
A0A1L1ZK56_9PHAE5.120e-6164.24Ribosomal protein L6 n=10 Tax=Sargassaceae TaxID=3... [more]
A0A0G2RKW1_TUROR1.030e-6062.50Ribosomal protein L6 n=1 Tax=Turbinaria ornata Tax... [more]
A0A8F0FCE9_9PHAE2.070e-6063.82Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID... [more]
A0A3G5FPP9_9PHAE2.070e-6065.13Ribosomal protein L6 n=1 Tax=Cladosiphon okamuranu... [more]
A0A0U1WNM4_SARFS1.680e-5961.59Ribosomal protein L6 n=1 Tax=Sargassum fusiforme T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019906Ribosomal protein L6, bacterial-typePRINTSPR00059RIBOSOMALL6coord: 204..225
score: 37.39
coord: 135..160
score: 37.59
coord: 163..179
score: 36.24
IPR019906Ribosomal protein L6, bacterial-typePANTHERPTHR11655:SF1454S RIBOSOMAL PROTEIN L6, MITOCHONDRIALcoord: 134..231
NoneNo IPR availableGENE3D3.30.1370.30coord: 2..65
e-value: 4.3E-5
score: 25.6
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..123
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 148..166
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 167..187
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 188..233
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 124..147
IPR000630Ribosomal protein S8PFAMPF00410Ribosomal_S8coord: 5..119
e-value: 1.7E-5
score: 24.8
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 147..233
e-value: 1.8E-17
score: 65.2
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 147..232
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 155..222
e-value: 1.5E-6
score: 28.8
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 134..231
IPR035987Ribosomal protein S8 superfamilySUPERFAMILY56047Ribosomal protein S8coord: 2..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80016contigH-elongata_contig80016:2039..2877 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80016.15660.1mRNA_H-elongata_contig80016.15660.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80016 2001..2904 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80016.15660.1 ID=prot_H-elongata_contig80016.15660.1|Name=mRNA_H-elongata_contig80016.15660.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
MLPKIFNKLRNGLVVYNLSITFKEVSFSTRVLDLLWRENLIRGYRKKDDG
LITVLLRYYEGFPVCTRLIVISRPRHRLYVYVYRLPTEVNCSSNQGKVRI
SGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIE
LSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSN
YGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019906Ribosomal_L6_bac-type
IPR000630Ribosomal_S8
IPR036789Ribosomal_L6_a/b-dom_sf
IPR020040Ribosomal_L6_a/b-dom
IPR000702Ribosomal_L6
IPR035987Ribosomal_S8_sf