mRNA_H-elongata_contig80016.15660.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: Q2TUL2_FUCVE (Ribosomal protein L6 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUL2_FUCVE) HSP 1 Score: 211 bits (536), Expect = 7.500e-66 Identity = 106/159 (66.67%), Postives = 126/159 (79.25%), Query Frame = 3
Query: 282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKKN 758
+YRLP V+C SNQGKVRISGP GVV F S SK++RKGN+LIFLP LT YYSSIFTQ VLGV LGY+IEL+LKGIGYRV KE G+LI +LGYSH + L IP++I V KK FSL+S+NYG LQN+ KIRSYR P+ YKG V+Y NE++ K+ KKN
Sbjct: 5 MYRLPVGVDCLSNQGKVRISGPCGVVVFDSSSKLYRKGNILIFLPELTKYYSSIFTQAVLGVVLGYTIELNLKGIGYRVSKEKGELILHLGYSHSIILEIPKEITVTLDKKIFSLMSANYGLLQNFATKIRSYRLPDSYKGAGVLYNNEIVNRKQGKKN 163
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A1L2F1G5_9PHAE (Ribosomal protein L6 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1G5_9PHAE) HSP 1 Score: 209 bits (531), Expect = 4.290e-65 Identity = 100/159 (62.89%), Postives = 126/159 (79.25%), Query Frame = 3
Query: 282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKKN 758
VYRLP VNC SN GKV +SG +G V+F S SKI+RKGN ++FLPYLT YYSSIFTQ VLGV LGY+IEL LKGIGY+V+K KLIF+LG+SH +S+ IPE + V+ KKTFSL+S+N+G LQN+ IR+YRFP+ YKG V+Y NE+++ K+ KKN
Sbjct: 5 VYRLPIGVNCLSNNGKVYVSGSFGFVTFDSASKIYRKGNTIVFLPYLTSYYSSIFTQAVLGVVLGYTIELILKGIGYKVYKANDKLIFSLGFSHTISIRIPEGVSVRFNKKTFSLMSANFGLLQNFATSIRAYRFPDTYKGAGVVYMNEIVICKEGKKN 163
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: Q2TUH0_9PHAE (Ribosomal protein L6 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUH0_9PHAE) HSP 1 Score: 208 bits (530), Expect = 6.090e-65 Identity = 103/158 (65.19%), Postives = 125/158 (79.11%), Query Frame = 3
Query: 282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKK 755
V+RLP V C+S+ GKVR+SG G+V F S S +HRKGNM+IFLPYLTPYYSSIFTQ VLGV LGY+IEL LKGIGYRV +E GKLIF+LGYS + LTIPE I VK KKTF L S+N+G LQN+ IR +RFP+PYKGG ++Y +E++V K+ KK
Sbjct: 5 VFRLPIGVECTSSSGKVRVSGARGLVIFDSVSNLHRKGNMVIFLPYLTPYYSSIFTQAVLGVILGYTIELKLKGIGYRVREEKGKLIFSLGYSRPIILTIPEAISVKFNKKTFLLRSANFGLLQNFATTIRRFRFPDPYKGGGILYDSEIIVCKEGKK 162
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A068LGK5_9PHAE (Ribosomal protein L6 n=3 Tax=Sargassum TaxID=3015 RepID=A0A068LGK5_9PHAE) HSP 1 Score: 207 bits (528), Expect = 1.220e-64 Identity = 100/159 (62.89%), Postives = 123/159 (77.36%), Query Frame = 3
Query: 282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKKN 758
VYRLP VNC SN GKV + GP G+V F SKIHRKGNM++FLPYLTPYYSSIFTQ VLGV LGYS+EL LKG+GY+V+K KLIF LG+SH +S+ IP+ ++V+ KKT SL+SSN G LQN+ IR+YRFP+ YKG V+Y NE++ K+ KKN
Sbjct: 5 VYRLPIGVNCLSNNGKVSVLGPRGIVDFDCVSKIHRKGNMIVFLPYLTPYYSSIFTQAVLGVILGYSMELILKGVGYKVYKFNKKLIFALGFSHSISIDIPDGVLVRFNKKTLSLMSSNLGLLQNFTTSIRAYRFPDSYKGAGVVYVNEMVTCKEGKKN 163
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: E6ZEQ4_ECTSI (Ribosomal protein L6 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZEQ4_ECTSI) HSP 1 Score: 206 bits (524), Expect = 4.940e-64 Identity = 105/158 (66.46%), Postives = 123/158 (77.85%), Query Frame = 3
Query: 282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKK 755
V+RLP V CSSN GKV +SG G V F S S +HRKG+M+IFLPYLTPYYSSIF Q V GV LGY+IELSLKGIGYRV KE KLIF+LGYS V L IP+DI ++ KKTFSLIS+NYGTLQN+ IRSYRFP+ YKG V+Y +E++V K+ KK
Sbjct: 5 VFRLPIGVKCSSNNGKVYVSGNKGRVVFDSVSNLHRKGDMVIFLPYLTPYYSSIFRQAVQGVVLGYTIELSLKGIGYRVRKEEEKLIFSLGYSKPVILDIPKDISIRFNKKTFSLISANYGTLQNFASSIRSYRFPDSYKGAGVLYADEIIVCKEGKK 162
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A1L1ZK56_9PHAE (Ribosomal protein L6 n=10 Tax=Sargassaceae TaxID=3014 RepID=A0A1L1ZK56_9PHAE) HSP 1 Score: 205 bits (522), Expect = 9.920e-64 Identity = 101/159 (63.52%), Postives = 123/159 (77.36%), Query Frame = 3
Query: 282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKKN 758
VYRLP VNC SN GKV + GP GVV F SKI+RKGNM++FLPYLTPYYSSIFTQ VLGV LGYS+EL LKGIGY+V+K KLIF LG+SH VS+ IPE + V+ KKT SL+S+++G LQN+ IR+YRFP+ YKG V+Y NE++ K+ KKN
Sbjct: 5 VYRLPIGVNCLSNNGKVYVLGPCGVVDFDCVSKIYRKGNMVVFLPYLTPYYSSIFTQAVLGVVLGYSLELVLKGIGYKVYKSNEKLIFTLGFSHSVSIDIPEGVFVRFNKKTLSLMSADFGLLQNFTTGIRAYRFPDCYKGAGVVYINEIVTCKEGKKN 163
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A0G2RKW1_TUROR (Ribosomal protein L6 n=1 Tax=Turbinaria ornata TaxID=86657 RepID=A0A0G2RKW1_TUROR) HSP 1 Score: 204 bits (520), Expect = 1.990e-63 Identity = 99/159 (62.26%), Postives = 124/159 (77.99%), Query Frame = 3
Query: 282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKKN 758
+YRLP V C SN GKV +SGP GVVSF SKI+RKGNM+IFLPYLT Y SSIFTQ VLGV LGYS+EL LKGIGY+V+K KLIF+LG+SH + + IP+ ++V+ KKTFSL+S+N+G LQN+ IR YRFP+ YKG V+Y NE+++ K+ KKN
Sbjct: 5 IYRLPIGVTCLSNNGKVYVSGPCGVVSFDCVSKIYRKGNMIIFLPYLTSYDSSIFTQAVLGVVLGYSVELILKGIGYKVYKSDEKLIFSLGFSHSIFIDIPKGVLVRFNKKTFSLVSANFGLLQNFATSIRRYRFPDSYKGAGVVYANEIVICKEGKKN 163
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A0U1WNM4_SARFS (Ribosomal protein L6 n=1 Tax=Sargassum fusiforme TaxID=590727 RepID=A0A0U1WNM4_SARFS) HSP 1 Score: 201 bits (512), Expect = 3.250e-62 Identity = 97/159 (61.01%), Postives = 120/159 (75.47%), Query Frame = 3
Query: 282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKKN 758
+YRLP VNC SN GKV +SGP GVV F SKI+RKGNM++FLPYL+ YYSSIF Q VLGV LGYS+EL LKGIGY+ +K KLIF LG+SH +S+ IPE + V+ KKT SLIS+N G LQN+ IR+YRFP+ YKG ++Y NE++ K+ KKN
Sbjct: 5 IYRLPIGVNCLSNNGKVFVSGPCGVVDFYCVSKIYRKGNMIVFLPYLSSYYSSIFIQAVLGVVLGYSVELVLKGIGYKAYKSDEKLIFTLGFSHSISIDIPEGVFVRLNKKTLSLISANLGLLQNFTTSIRAYRFPDSYKGAGIVYVNEIVTCKEGKKN 163
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A8F0FCE9_9PHAE (Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FCE9_9PHAE) HSP 1 Score: 201 bits (512), Expect = 3.250e-62 Identity = 100/158 (63.29%), Postives = 124/158 (78.48%), Query Frame = 3
Query: 282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKK 755
V+RLP V+CSSN+GKVR+SG G+V+F S S ++RKGNM+IFLPYLTPY SSIF Q + GV LGY+IEL LKGIGYRV +E KLIF+LGYS V L IP+D+ VK K+TFSL+S+NYG LQN+ IR YRFP+ YKG V+Y NE++V K+ KK
Sbjct: 5 VFRLPIGVSCSSNKGKVRVSGCCGMVTFDSISNLYRKGNMVIFLPYLTPYESSIFKQAIYGVVLGYTIELRLKGIGYRVREEDNKLIFSLGYSRPVLLNIPKDVEVKFSKRTFSLMSANYGVLQNFATTIRRYRFPDSYKGAGVLYENEIIVCKEGKK 162
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Match: A0A3G5FPP9_9PHAE (Ribosomal protein L6 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPP9_9PHAE) HSP 1 Score: 201 bits (512), Expect = 3.250e-62 Identity = 102/158 (64.56%), Postives = 120/158 (75.95%), Query Frame = 3
Query: 282 VYRLPTEVNCSSNQGKVRISGPYGVVSFKSDSKIHRKGNMLIFLPYLTPYYSSIFTQGVLGVFLGYSIELSLKGIGYRVHKEYGKLIFNLGYSHLVSLTIPEDIVVKKKKKTFSLISSNYGTLQNYEKKIRSYRFPNPYKGGDVIYTNEVLV*KKKKK 755
VYRLP V CSS GKVR+SG G V F S S ++RKGNM+IFLPYLTPYYSSIF Q V GV LGY+IELSLKGIGYRV +E KLIF+LGYS V L +P+DI VK KKTFSL+S+NYG LQN+ IRSYRFP+ YK V+Y E+++ K+ KK
Sbjct: 5 VYRLPIGVECSSKNGKVRVSGSNGTVVFNSVSNLYRKGNMVIFLPYLTPYYSSIFRQAVQGVVLGYTIELSLKGIGYRVREEDKKLIFSLGYSKPVILNMPDDISVKFNKKTFSLLSANYGVLQNFATTIRSYRFPDSYKASGVLYIGEIVICKEGKK 162 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80016.15660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80016.15660.1 >prot_H-elongata_contig80016.15660.1 ID=prot_H-elongata_contig80016.15660.1|Name=mRNA_H-elongata_contig80016.15660.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp MLPKIFNKLRNGLVVYNLSITFKEVSFSTRVLDLLWRENLIRGYRKKDDGback to top mRNA from alignment at H-elongata_contig80016:2001..2904+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80016.15660.1 ID=mRNA_H-elongata_contig80016.15660.1|Name=mRNA_H-elongata_contig80016.15660.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=904bp|location=Sequence derived from alignment at H-elongata_contig80016:2001..2904+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80016:2001..2904+ >mRNA_H-elongata_contig80016.15660.1 ID=mRNA_H-elongata_contig80016.15660.1|Name=mRNA_H-elongata_contig80016.15660.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig80016:2001..2904+ (Himanthalia elongata Himel1 dioecious)back to top |