mRNA_H-elongata_contig80016.15659.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80016.15659.1
Unique NamemRNA_H-elongata_contig80016.15659.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80016.15659.1 vs. uniprot
Match: A0A0U2LTP8_9PHAE (ATP synthase subunit 9, mitochondrial n=153 Tax=Stramenopiles TaxID=33634 RepID=A0A0U2LTP8_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.380e-35
Identity = 72/75 (96.00%), Postives = 72/75 (96.00%), Query Frame = 2 
Query:   44 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALKEEIALFALMMAFLILFAL 268
            MLVQAAKLLGAGLATIGLAGAGVGIGTVF ALVLGTARNPSLKDELFRIAILGFAL E IALFALMMAFLILFAL
Sbjct:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFAALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILFAL 75
[Close]
BLAST of mRNA_H-elongata_contig80016.15659.1 vs. uniprot
Match: Q3S284_THAPS (ATP synthase subunit 9, mitochondrial n=16 Tax=Bacillariophyta TaxID=2836 RepID=Q3S284_THAPS)

HSP 1 Score: 117 bits (294), Expect = 3.070e-32
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 2 
Query:   44 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALKEEIALFALMMAFLILFAL 268
            ML+QAAK +GAGLATIGLAGAGVGIGTVFGALV+G +RNPSLKDELF++AILGFAL E IALF+LMMAFLILFAL
Sbjct:    1 MLLQAAKFVGAGLATIGLAGAGVGIGTVFGALVIGVSRNPSLKDELFKLAILGFALTEAIALFSLMMAFLILFAL 75
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BLAST of mRNA_H-elongata_contig80016.15659.1 vs. uniprot
Match: A0A8F0FD85_9PHAE (ATP synthase subunit 9, mitochondrial n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD85_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 4.350e-32
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 2 
Query:   44 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALKEEIALFALMMAFLILFAL 268
            MLVQA+K+LGAGLATIGL GAGVGIGTVFGALVLG +RNP+LKDELF+ AILGFAL E IALFALMMAFLILFA+
Sbjct:    1 MLVQASKILGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFAI 75
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BLAST of mRNA_H-elongata_contig80016.15659.1 vs. uniprot
Match: A0A2U9GIF0_9STRA (ATP synthase subunit 9, mitochondrial n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2U9GIF0_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.560e-31
Identity = 62/74 (83.78%), Postives = 70/74 (94.59%), Query Frame = 2 
Query:   44 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALKEEIALFALMMAFLILFA 265
            ML+QAAK +GAGLATIGLAGAGVGIGTVFGALV+G +RNPSLKDE+FR+AILGFAL E IALFALM+AFL+LFA
Sbjct:    1 MLLQAAKCVGAGLATIGLAGAGVGIGTVFGALVIGISRNPSLKDEMFRMAILGFALTEAIALFALMIAFLVLFA 74
[Close]
BLAST of mRNA_H-elongata_contig80016.15659.1 vs. uniprot
Match: A0A649UBP4_AURAN (ATP synthase subunit 9, mitochondrial n=3 Tax=cellular organisms TaxID=131567 RepID=A0A649UBP4_AURAN)

HSP 1 Score: 113 bits (283), Expect = 1.440e-30
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 2 
Query:   44 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALKEEIALFALMMAFLILFAL 268
            M++QAAKL+GAGL+TIGL GAGVGIG+VF AL+LG +RNPSLKDELFR+AILGFAL E IALFALMM FLILFAL
Sbjct:    1 MILQAAKLIGAGLSTIGLVGAGVGIGSVFAALILGISRNPSLKDELFRVAILGFALTEAIALFALMMGFLILFAL 75
[Close]
BLAST of mRNA_H-elongata_contig80016.15659.1 vs. uniprot
Match: D2Z269_HETAK (ATP synthase subunit 9, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z269_HETAK)

HSP 1 Score: 113 bits (282), Expect = 2.050e-30
Identity = 62/74 (83.78%), Postives = 68/74 (91.89%), Query Frame = 2 
Query:   44 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALKEEIALFALMMAFLILFA 265
            ML+QAAK +GAGLATIGLAGAGVGIGTVF ALVLGT+RNPS+KD+LFR AILGFAL E  ALFALM+AFLILFA
Sbjct:    1 MLLQAAKFVGAGLATIGLAGAGVGIGTVFSALVLGTSRNPSIKDDLFRFAILGFALTEATALFALMVAFLILFA 74
[Close]
BLAST of mRNA_H-elongata_contig80016.15659.1 vs. uniprot
Match: A0A1J0RD98_9STRA (ATP synthase subunit 9, mitochondrial n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A1J0RD98_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.050e-30
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 2 
Query:   44 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALKEEIALFALMMAFLILFAL 268
            ML+QAAK +GAGLATIGLAGAG GIGTVFG+LVLG +RNP LKDELF++AILGFAL E IALFALM+AFLILFAL
Sbjct:    1 MLLQAAKCIGAGLATIGLAGAGAGIGTVFGSLVLGISRNPKLKDELFKMAILGFALTEAIALFALMIAFLILFAL 75
[Close]
BLAST of mRNA_H-elongata_contig80016.15659.1 vs. uniprot
Match: A0A8E8U4W3_9PHAE (ATP synthase subunit 9, mitochondrial n=2 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4W3_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.910e-30
Identity = 58/75 (77.33%), Postives = 71/75 (94.67%), Query Frame = 2 
Query:   44 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALKEEIALFALMMAFLILFAL 268
            ML+QA+KL+G GLATIGL GAGVGIGTVFG+L++GT+RNPS+K+ELF++A+LGFAL E IALFALM+AFLILFAL
Sbjct:    1 MLLQASKLIGGGLATIGLTGAGVGIGTVFGSLIIGTSRNPSMKEELFKLAVLGFALTEAIALFALMVAFLILFAL 75
[Close]
BLAST of mRNA_H-elongata_contig80016.15659.1 vs. uniprot
Match: A0A4Y5T8G9_9PHAE (ATP synthase subunit 9, mitochondrial n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A4Y5T8G9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.860e-30
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 2 
Query:   44 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALKEEIALFALMMAFLILFAL 268
            M  ++A+L+GAGLATIGLAGAGVGIGTVFGALVLGTARNPS+K++LFR AILGFAL E IALFALMMAFLILF++
Sbjct:    1 MSYRSAQLIGAGLATIGLAGAGVGIGTVFGALVLGTARNPSIKNDLFRFAILGFALTEAIALFALMMAFLILFSI 75
[Close]
BLAST of mRNA_H-elongata_contig80016.15659.1 vs. uniprot
Match: A0A5B9IQ06_9STRA (ATP synthase subunit 9, mitochondrial n=1 Tax=Cafileria marina TaxID=2557541 RepID=A0A5B9IQ06_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.180e-29
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 2 
Query:   44 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALKEEIALFALMMAFLILF 262
            ML+ AAKL+GAGLATIGLAGAGVGIG VFG+LVLG +RNP+ KDELFR+AILGFAL E IALFALMMAFLILF
Sbjct:    1 MLLSAAKLIGAGLATIGLAGAGVGIGNVFGSLVLGVSRNPNEKDELFRLAILGFALTEAIALFALMMAFLILF 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80016.15659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2LTP8_9PHAE1.380e-3596.00ATP synthase subunit 9, mitochondrial n=153 Tax=St... [more]
Q3S284_THAPS3.070e-3285.33ATP synthase subunit 9, mitochondrial n=16 Tax=Bac... [more]
A0A8F0FD85_9PHAE4.350e-3285.33ATP synthase subunit 9, mitochondrial n=1 Tax=Prot... [more]
A0A2U9GIF0_9STRA3.560e-3183.78ATP synthase subunit 9, mitochondrial n=3 Tax=Euka... [more]
A0A649UBP4_AURAN1.440e-3081.33ATP synthase subunit 9, mitochondrial n=3 Tax=cell... [more]
D2Z269_HETAK2.050e-3083.78ATP synthase subunit 9, mitochondrial n=1 Tax=Hete... [more]
A0A1J0RD98_9STRA2.050e-3082.67ATP synthase subunit 9, mitochondrial n=4 Tax=Baci... [more]
A0A8E8U4W3_9PHAE2.910e-3077.33ATP synthase subunit 9, mitochondrial n=2 Tax=Phae... [more]
A0A4Y5T8G9_9PHAE5.860e-3081.33ATP synthase subunit 9, mitochondrial n=1 Tax=Ishi... [more]
A0A5B9IQ06_9STRA1.180e-2983.56ATP synthase subunit 9, mitochondrial n=1 Tax=Cafi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80016contigH-elongata_contig80016:1194..1584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score93.6
Seed ortholog evalue4.3e-17
Seed eggNOG ortholog7668.SPU_013052-tr
KEGG koko:K02128
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
EggNOG free text desc.ATP synthesis coupled proton transport
EggNOG OGs3A3YG@33154,3BS02@33208,3D841@33213,COG0636@1,KOG3025@2759
COG Functional cat.C
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categorysignal anchor
Exons1
Model size391
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80016.15659.1prot_H-elongata_contig80016.15659.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80016 1237..1464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931206.463715-UTR-H-elongata_contig80016:1193..12361622931206.463715-UTR-H-elongata_contig80016:1193..1236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80016 1194..1236 +
1691679741.347986-UTR-H-elongata_contig80016:1193..12361691679741.347986-UTR-H-elongata_contig80016:1193..1236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80016 1194..1236 +
1622931206.509623-UTR-H-elongata_contig80016:1464..15841622931206.509623-UTR-H-elongata_contig80016:1464..1584Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80016 1465..1584 +
1691679741.372337-UTR-H-elongata_contig80016:1464..15841691679741.372337-UTR-H-elongata_contig80016:1464..1584Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80016 1465..1584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931206.479533-CDS-H-elongata_contig80016:1236..14641622931206.479533-CDS-H-elongata_contig80016:1236..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80016 1237..1464 +
1691679741.361481-CDS-H-elongata_contig80016:1236..14641691679741.361481-CDS-H-elongata_contig80016:1236..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80016 1237..1464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80016.15659.1

>prot_H-elongata_contig80016.15659.1 ID=prot_H-elongata_contig80016.15659.1|Name=mRNA_H-elongata_contig80016.15659.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIA
ILGFALKEEIALFALMMAFLILFAL*
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mRNA from alignment at H-elongata_contig80016:1194..1584+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80016.15659.1 ID=mRNA_H-elongata_contig80016.15659.1|Name=mRNA_H-elongata_contig80016.15659.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=391bp|location=Sequence derived from alignment at H-elongata_contig80016:1194..1584+ (Himanthalia elongata Himel1 dioecious)
TATTTCAAGAAGCCCGATAATATTTTATTAAAATCTCTAAATAATGTTAG
TTCAAGCTGCTAAACTTTTAGGTGCTGGTTTGGCTACCATAGGTTTAGCC
GGAGCAGGTGTGGGTATTGGAACTGTTTTTGGTGCTCTTGTTTTAGGTAC
CGCACGTAATCCTTCCCTGAAAGATGAGTTATTTAGAATTGCAATTTTAG
GTTTCGCTTTAAAAGAGGAGATTGCTCTATTTGCTCTTATGATGGCTTTC
TTAATTTTATTTGCCCTGTAATTGTACAATTTAGTAAAAAAAAAAAAAAA
AACTTGAGAGAAAATTTAATGTATTCGGTACTTTAATTTTAGGCGGTGTA
GTTTAGCGGTTAGAACATTGGAATCATATCCCAAATGCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig80016:1194..1584+

>mRNA_H-elongata_contig80016.15659.1 ID=mRNA_H-elongata_contig80016.15659.1|Name=mRNA_H-elongata_contig80016.15659.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig80016:1194..1584+ (Himanthalia elongata Himel1 dioecious)
ATGTTAGTTCAAGCTGCTAAACTTTTAGGTGCTGGTTTGGCTACCATAGG
TTTAGCCGGAGCAGGTGTGGGTATTGGAACTGTTTTTGGTGCTCTTGTTT
TAGGTACCGCACGTAATCCTTCCCTGAAAGATGAGTTATTTAGAATTGCA
ATTTTAGGTTTCGCTTTAAAAGAGGAGATTGCTCTATTTGCTCTTATGAT
GGCTTTCTTAATTTTATTTGCCCTGTAAATGTTAGTTCAAGCTGCTAAAC
TTTTAGGTGCTGGTTTGGCTACCATAGGTTTAGCCGGAGCAGGTGTGGGT
ATTGGAACTGTTTTTGGTGCTCTTGTTTTAGGTACCGCACGTAATCCTTC
CCTGAAAGATGAGTTATTTAGAATTGCAATTTTAGGTTTCGCTTTAAAAG
AGGAGATTGCTCTATTTGCTCTTATGATGGCTTTCTTAATTTTATTTGCC
CTGTAA
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