mRNA_H-elongata_contig80008.15657.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80008.15657.1
Unique NamemRNA_H-elongata_contig80008.15657.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80008.15657.1 vs. uniprot
Match: A0A7S3YM08_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YM08_HETAK)

HSP 1 Score: 63.9 bits (154), Expect = 2.030e-9
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  106 GCVSDYDSSLDVDYFADKAEISYAQTFTVTYEPSYKVLNISGTVY------VLYQCGTSQPQLTDVTVQEYISIPVTSVATGTPDHIPRIEV 363
            GCV+DY+++ D  YF  KA I YA+ F +TY  SYK+++++   Y      + YQCGT  P+  + T   ++ IPV  VA  +   IP IE+
Sbjct:   27 GCVTDYNNTKD--YFPHKATIEYAEYFNITYNNSYKIIDVNAGSYYGTQKIIAYQCGTPIPEWENDT-DIFVEIPVKYVAVSSTPMIPYIEI 115          
BLAST of mRNA_H-elongata_contig80008.15657.1 vs. uniprot
Match: UPI0019B58EC6 (ABC transporter substrate-binding protein n=2 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019B58EC6)

HSP 1 Score: 63.5 bits (153), Expect = 2.730e-9
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 1
Query:  103 DGCVSDYDSSLDVDYFADKAEISYAQTFTVTYEPSYKVLNI--------SGTVYVLYQCGTSQPQLTDVTVQEYISIPVTSVATGTPDHIPRIE 360
            DGCV+DYD++  VDYF DKAE  YA    V Y  +YKV+ +        +   YVL QCGT  P +TD    + I +P+  + + +   +P ++
Sbjct:   38 DGCVTDYDTA--VDYFPDKAEFEYATGVEVEYFNNYKVVTVLQPWPGADTSYQYVLVQCGTPAPAVTDFPNAQVIEVPIERIISMSTTFLPPLD 129          
BLAST of mRNA_H-elongata_contig80008.15657.1 vs. uniprot
Match: A0A7R9U9N4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9N4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.260e-9
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 1
Query:  100 VDG-CVSD--YDSSLDVDYFADKAEISYAQTFTVTYEPSYKVLNISGT----VYVLYQCGTSQPQLTDVTVQEYISIPVTSVATGTPDHIPRIE 360
            VDG CV+D  YD S  VDYF DK  + +A  F VTY  SYKV+ ++       +VLYQCGT  P + D    +Y S+P+T         +P IE
Sbjct:    8 VDGSCVADGQYDGS--VDYFPDKILVDFATHFEVTYNNSYKVVEVTAPGNEQKFVLYQCGTPVPNVPDA--DKYFSVPITKSVVAVTTLLPWIE 97          
BLAST of mRNA_H-elongata_contig80008.15657.1 vs. uniprot
Match: A0A2H2X127_9CYAN (ABC transporter, periplasmic-binding protein n=2 Tax=unclassified Calothrix TaxID=2619626 RepID=A0A2H2X127_9CYAN)

HSP 1 Score: 60.5 bits (145), Expect = 3.290e-8
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   94 STVDGCVSDYDSSLDVDYFADKAEISYAQTFTVTYEPSYKVLNIS--------GTVYVLYQCGTSQPQLTDVTVQEY-ISIPVTSVATGTPDHIPRI 357
            +T   CV  Y+++ D  YF DK  ++ A+ F V Y   YKV+ I+        G  Y+L QCGT  P+++D ++  Y I++PV SV + +  H+P +
Sbjct:   38 ATNSACVEQYEATRD--YFPDKVSVTRAKGFNVEYYNHYKVVTINNPWKGSKTGFKYILVQCGTPAPKISDASLNTYYITVPVNSVISLSTTHLPHL 132          
BLAST of mRNA_H-elongata_contig80008.15657.1 vs. uniprot
Match: A0A3N1GXD1_9PSEU (Iron complex transport system substrate-binding protein n=3 Tax=Saccharothrix TaxID=2071 RepID=A0A3N1GXD1_9PSEU)

HSP 1 Score: 58.5 bits (140), Expect = 1.550e-7
Identity = 32/95 (33.68%), Postives = 55/95 (57.89%), Query Frame = 1
Query:  103 DGCVSDYDSSLDVDYFADKAEISYAQTFTVTYEPSYKVLNISGTV--------YVLYQCGTSQPQLT-DVTVQEYISIPVTSVATGTPDHIPRIE 360
            DGCV+DY    D  YF DK+ ++ ++ + ++Y  SYK + ++ T         YVLYQCGT QP+ T D+     + +PVT+V+  + + +  ++
Sbjct:   36 DGCVTDYSEGRD--YFPDKSTVTESELWKISYHNSYKTITLADTENADGPELKYVLYQCGTPQPEATGDLEGALVVQVPVTNVSVTSFNALAMVD 128          
BLAST of mRNA_H-elongata_contig80008.15657.1 vs. uniprot
Match: UPI001C5F535D (ABC transporter substrate-binding protein n=1 Tax=Saccharothrix sp. SC076 TaxID=2861747 RepID=UPI001C5F535D)

HSP 1 Score: 57.8 bits (138), Expect = 2.880e-7
Identity = 32/94 (34.04%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  106 GCVSDYDSSLDVDYFADKAEISYAQTFTVTYEPSYKVLNISGTV--------YVLYQCGTSQPQLT-DVTVQEYISIPVTSVATGTPDHIPRIE 360
            GCV+DY    D  YF DK+ +  ++ + ++Y  SYK + ++ T         YVLYQCGT QP+ T D+    ++ +PVT+VA  + + +  ++
Sbjct:   31 GCVTDYAEGRD--YFPDKSTVVESELWDISYHNSYKTITLADTENVGGPDLKYVLYQCGTPQPEATGDLAGALFVQVPVTNVAVTSFNALAMVD 122          
BLAST of mRNA_H-elongata_contig80008.15657.1 vs. uniprot
Match: A0A399YXA1_9CHLR (ABC transporter substrate-binding protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A399YXA1_9CHLR)

HSP 1 Score: 57.4 bits (137), Expect = 3.930e-7
Identity = 37/96 (38.54%), Postives = 50/96 (52.08%), Query Frame = 1
Query:  100 VDGCVSDYDSSLDVDYFADKAEISYAQTFTVTYEPSYKVLNI-------SGTVYVLYQCGTSQPQLTDVTVQEYISIPVTSVATGTPDHIPRIEVQ 366
            VD CV +YD +  VDYF  KAEI YA+ F+V Y  +YKV+ I       +   YVL QCGT  P+  +  V   + +PV          +P +E Q
Sbjct:   33 VDACVENYDPA--VDYFPAKAEIEYAENFSVEYFNNYKVVTILPWPGAEAPQTYVLVQCGTPAPEGFEDAVT--VEVPVQRFVAMATTILPALEAQ 124          
BLAST of mRNA_H-elongata_contig80008.15657.1 vs. uniprot
Match: UPI001E43024C (ABC transporter substrate-binding protein n=1 Tax=Saccharothrix sp. NEAU-S10 TaxID=2893018 RepID=UPI001E43024C)

HSP 1 Score: 56.6 bits (135), Expect = 7.320e-7
Identity = 31/95 (32.63%), Postives = 55/95 (57.89%), Query Frame = 1
Query:  103 DGCVSDYDSSLDVDYFADKAEISYAQTFTVTYEPSYKVLNISGTV--------YVLYQCGTSQPQLT-DVTVQEYISIPVTSVATGTPDHIPRIE 360
            +GCV+DY    D  YF DK+ ++ ++ + ++Y  SYK + ++ T         YVLYQCGT QP+ T D+     + +PVT+V+  + + +  ++
Sbjct:   36 EGCVTDYAEGRD--YFPDKSTVTESELWQISYHNSYKTITLTDTENADGPELKYVLYQCGTPQPEATGDLAGALVVQVPVTNVSVTSFNALAMVD 128          
BLAST of mRNA_H-elongata_contig80008.15657.1 vs. uniprot
Match: A0A1Z5KN13_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KN13_FISSO)

HSP 1 Score: 55.1 bits (131), Expect = 2.630e-6
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  136 DVDYFADKAEISYAQTFTVTYEPSYKVL-NI-SGTVYVLYQCGTSQPQLTDVTVQEYISIPVTS-VATGTPDHIPRIE 360
            DVDYF DK     +  ++V+Y  +YK+L N+ S + Y+LYQCGT+ P+ TD+   E I IP+   VA     HIP +E
Sbjct:   32 DVDYFPDKVTAEDSALWSVSYHNTYKILRNLDSNSSYLLYQCGTTPPEETDL-YDEVIQIPIAPHVAIDEVVHIPMLE 108          
BLAST of mRNA_H-elongata_contig80008.15657.1 vs. uniprot
Match: A0A2E0Z502_9CHLR (ABC transporter substrate-binding protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0Z502_9CHLR)

HSP 1 Score: 54.7 bits (130), Expect = 3.530e-6
Identity = 29/94 (30.85%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  103 DGCVSDYDSSLDVDYFADKAEISYAQTFTVTYEPSYKVLNISG--------TVYVLYQCGTSQPQLTDVTVQEYISIPVTSVATGTPDHIPRIE 360
            DGCV +YD S  VDYF ++  +++A  FT+ Y  +YKV+ ++           Y+L QCGT  P+  +  V   + +P++S  + +  ++P ++
Sbjct:   86 DGCVENYDES--VDYFPEETAVTHADGFTIEYFNNYKVITVAAPWLGAEDSATYLLVQCGTRAPEGFEDAVT--VEVPISSFVSMSTTYLPYLD 175          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80008.15657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A7S3YM08_HETAK2.030e-939.13Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI0019B58EC62.730e-937.23ABC transporter substrate-binding protein n=2 Tax=... [more]
A0A7R9U9N4_9STRA4.260e-942.55Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2H2X127_9CYAN3.290e-835.05ABC transporter, periplasmic-binding protein n=2 T... [more]
A0A3N1GXD1_9PSEU1.550e-733.68Iron complex transport system substrate-binding pr... [more]
UPI001C5F535D2.880e-734.04ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A399YXA1_9CHLR3.930e-738.54ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI001E43024C7.320e-732.63ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A1Z5KN13_FISSO2.630e-643.59Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A2E0Z502_9CHLR3.530e-630.85ABC transporter substrate-binding protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80008contigH-elongata_contig80008:303..671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.9
Seed ortholog evalue5.7e-11
Seed eggNOG ortholog1435356.Y013_10370
KEGG koko:K02016
KEGG TC3.A.1.14
KEGG Pathwayko02010,map02010
KEGG ModuleM00240
EggNOG free text desc.ABC-type Fe3 -hydroxamate transport system, periplasmic
EggNOG OGs2IAFC@201174,4G7D6@85025,COG0614@1,COG0614@2
COG Functional cat.P
Best tax levelNocardiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_003560.1
Exons1
Model size369
Cds size369
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931206.1579926-CDS-H-elongata_contig80008:302..6711622931206.1579926-CDS-H-elongata_contig80008:302..671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80008 303..671 -
1691679741.2117116-CDS-H-elongata_contig80008:302..6711691679741.2117116-CDS-H-elongata_contig80008:302..671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80008 303..671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80008.15657.1prot_H-elongata_contig80008.15657.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80008 303..671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80008.15657.1

>prot_H-elongata_contig80008.15657.1 ID=prot_H-elongata_contig80008.15657.1|Name=mRNA_H-elongata_contig80008.15657.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MVDHGVGVLAQITTSSSTDAPTAAPTSAPLFSTVDGCVSDYDSSLDVDYF
ADKAEISYAQTFTVTYEPSYKVLNISGTVYVLYQCGTSQPQLTDVTVQEY
ISIPVTSVATGTPDHIPRIEVQ*
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mRNA from alignment at H-elongata_contig80008:303..671-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80008.15657.1 ID=mRNA_H-elongata_contig80008.15657.1|Name=mRNA_H-elongata_contig80008.15657.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at H-elongata_contig80008:303..671- (Himanthalia elongata Himel1 dioecious)
ATGGTTGACCACGGGGTGGGGGTTCTGGCGCAGATAACCACTTCGTCCTC GACGGACGCTCCGACGGCAGCTCCGACCTCAGCGCCACTATTTTCAACCG TCGACGGTTGCGTCTCGGACTACGACTCCTCGCTCGACGTCGACTACTTC GCCGACAAGGCCGAAATCAGCTACGCCCAGACATTCACCGTCACATACGA GCCCTCGTACAAGGTCTTGAACATCTCTGGGACTGTATACGTGCTGTACC AATGCGGTACTTCCCAACCGCAGCTGACGGACGTCACCGTGCAGGAGTAC ATCAGCATTCCCGTGACCAGCGTCGCCACCGGCACACCTGACCACATCCC ACGAATAGAGGTGCAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig80008:303..671-

>mRNA_H-elongata_contig80008.15657.1 ID=mRNA_H-elongata_contig80008.15657.1|Name=mRNA_H-elongata_contig80008.15657.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig80008:303..671- (Himanthalia elongata Himel1 dioecious)
ATGGTTGACCACGGGGTGGGGGTTCTGGCGCAGATAACCACTTCGTCCTC
GACGGACGCTCCGACGGCAGCTCCGACCTCAGCGCCACTATTTTCAACCG
TCGACGGTTGCGTCTCGGACTACGACTCCTCGCTCGACGTCGACTACTTC
GCCGACAAGGCCGAAATCAGCTACGCCCAGACATTCACCGTCACATACGA
GCCCTCGTACAAGGTCTTGAACATCTCTGGGACTGTATACGTGCTGTACC
AATGCGGTACTTCCCAACCGCAGCTGACGGACGTCACCGTGCAGGAGTAC
ATCAGCATTCCCGTGACCAGCGTCGCCACCGGCACACCTGACCACATCCC
ACGAATAGAGGTGCAGTAAATGGTTGACCACGGGGTGGGGGTTCTGGCGC
AGATAACCACTTCGTCCTCGACGGACGCTCCGACGGCAGCTCCGACCTCA
GCGCCACTATTTTCAACCGTCGACGGTTGCGTCTCGGACTACGACTCCTC
GCTCGACGTCGACTACTTCGCCGACAAGGCCGAAATCAGCTACGCCCAGA
CATTCACCGTCACATACGAGCCCTCGTACAAGGTCTTGAACATCTCTGGG
ACTGTATACGTGCTGTACCAATGCGGTACTTCCCAACCGCAGCTGACGGA
CGTCACCGTGCAGGAGTACATCAGCATTCCCGTGACCAGCGTCGCCACCG
GCACACCTGACCACATCCCACGAATAGAGGTGCAGTAA
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