prot_H-elongata_contig7998.15650.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7998.15650.1
Unique Nameprot_H-elongata_contig7998.15650.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length237
Homology
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.710e-45
Identity = 93/239 (38.91%), Postives = 142/239 (59.41%), Query Frame = 0
Query:    1 FPIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGV--TKTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVAIKIHEDNEGAIKMAKN 237
            F +K+LGEA + LG  I  DR  GTL + Q +Y+  V  RF     K  + P   G K LSK+ SP TDAE E+MR    + ++G+L++  T T+PD+++   QL++F +NPG   W+AA +VL+YL  T+D GI Y G   G+  L  + D D+G+  D  RSVSG  +M+ G   ++ S+ Q+  A +S+E+EY+AL+    E+ + R   + +      A ++ EDN+GAI +A N
Sbjct:  130 FKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMK-LSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSGN-NGKAVLEVYTDADWGSNLDGRRSVSGIMMMIGGAPGVFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRATLKDLGHEQVGATQVWEDNQGAIALASN 366          
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 165 bits (418), Expect = 5.390e-44
Identity = 92/239 (38.49%), Postives = 135/239 (56.49%), Query Frame = 0
Query:    1 FPIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVT--KTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVAIKIHEDNEGAIKMAKN 237
            F ++DLG  SY LG  IT +R    L L Q QYI    E FG+T  K +  P       LSKS SPQT  E+EEM +I     VG+L++ ATMT+PDI++ A  LA+FN NPG   W+A + VL+YL  T D+ + YG +P      + + D D G   D  +S +G  + +  GA+ W S++Q +   +S+E+EY+A      E++ +R++ E +        K+  DN+  IK+AKN
Sbjct:  308 FKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTPMTPNL-ILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYLKGTMDIKLEYGPDPTTNDLFVTYCDSDLGGNRDNGKSTTGYILKLGSGAVSWSSKLQPMVTLSSTEAEYIAAVAAGKEIKAMRNLLEELGYQSQQPAKLLIDNQSTIKVAKN 545          
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.020e-43
Identity = 90/237 (37.97%), Postives = 131/237 (55.27%), Query Frame = 0
Query:    2 PIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPP-IDVAIKIHEDNEGAIKMAKN 237
            P+K LGE  +Y GC+   DR AG L + Q  Y + + ER GV     +P     +     DS   +  +E       R ++G+L+W A +T+PDI+ A   +A++   P    WRAA  +L Y  RT   GI++         L+ + D DY +     RSVSGG VM AGGAI WFS+ QK    +++++EYVA+A M  E+ FLR V  F+ P  +   I ++EDNEGAI++AK+
Sbjct:   94 PVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERHGVEWGGGIPLPTTWRLW---DSDVNEPSVE----YPFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKH 323          
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.500e-43
Identity = 88/238 (36.97%), Postives = 133/238 (55.88%), Query Frame = 0
Query:    2 PIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIVPSAAGRKALS-KSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPP-IDVAIKIHEDNEGAIKMAKN 237
            P+K LGE  +Y GC+   DR AG L + Q  Y + + ER+GV     +P     K     +D P  +           R +VG+L+W A +T+PDI+ +   +A+++  P    W+AA  +L Y  RT   GI++         L+ +++ DY +     RSVSGG VM AGGAI WFS+ QK    +++++EYVA+A M  E+ FLR V  F+ P  +   I ++EDNEGAI++AK+
Sbjct:  146 PVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEHPF--------RALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKH 375          
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A4S4K468_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K468_9APHY)

HSP 1 Score: 161 bits (407), Expect = 2.530e-43
Identity = 89/239 (37.24%), Postives = 140/239 (58.58%), Query Frame = 0
Query:    1 FPIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVT--KTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVAIKIHEDNEGAIKMAKN 237
            +P+ DLGE S+ LG  +  DR A TL L QH YI ++  RF  T  K S +P     + L+KS  P + A+I  MR+I  RE +G+LM+AA  T+PDISFA   LA+F+ NPG T W A ++V +YL  T++L + YGG   G   L  ++D D G   +   +++G   ++ GGA+ W S+ Q++   +++E+EYVA      E  ++R +   +  P+D    ++ D++ AI + K+
Sbjct:  169 YPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQ-LTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRG---LEGYVDAD-GASQEHRHAITGYVFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLLGEVFRPLDGPTTLYSDSQSAIALTKD 402          
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A4S4L7S0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4L7S0_9AGAM)

HSP 1 Score: 157 bits (396), Expect = 4.980e-43
Identity = 86/239 (35.98%), Postives = 136/239 (56.90%), Query Frame = 0
Query:    1 FPIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIV--PSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVAIKIHEDNEGAIKMAKN 237
            F + DLG  S+ LG  +  DR+   L L Q QYI  + ERF ++  + V  P   G + LSK+ +P+   EI  M+ +  R++VGALM+ A  T+PDIS+A   LA+F+ NPGP  W+AA+ + +YL  T+D+ +TY  +P        + D D+G   D  RS SG  V M  GAI W SR+Q +   +++E+EY++  +   E+ +LR++             ++ DN+ A+ +A+N
Sbjct:   22 FKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHR-LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSGMVVKMGTGAISWASRLQTIVTLSTTEAEYISAVQSGQEIIWLRNLLSEFGYEFTGPSTLYVDNQSALAVARN 259          
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A401GID0_9APHY (Transposon Ty5-1 protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GID0_9APHY)

HSP 1 Score: 155 bits (393), Expect = 2.760e-42
Identity = 91/239 (38.08%), Postives = 134/239 (56.07%), Query Frame = 0
Query:    1 FPIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVT--KTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVAIKIHEDNEGAIKMAKN 237
            F ++DLG   + LG  I  DR   T+ L Q QYI  + E +G++  K+   P   G + LSK+ +PQT  E E MR++     VGALM+ A  T+PDI FA   LA+FN NPGPT W A + V  YL  T DL + YG     E   L + D D+G   D CRS  G    +  GAI W S++Q + A +++E+EY+A  +   E+ ++R++   +   +  A  ++ DN+ AI ++KN
Sbjct:   52 FKLRDLGSTQFLLGIDIKRDRAKHTISLSQRQYIVDMLECYGLSDCKSVSTPMDPGAE-LSKALAPQTQEETEYMRKVPYLSAVGALMYLAITTRPDIMFAISCLARFNANPGPTHWIAVKHVFCYLKGTMDLRLHYGPSDVKEF-FLTYTDSDFGGERDNCRSTGGYLEKVGTGAISWSSKLQSLIAQSTTEAEYIAAVEAGKEILWMRNLLTELGYTVSKASTLYTDNQSAISVSKN 288          
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 3.860e-42
Identity = 90/237 (37.97%), Postives = 132/237 (55.70%), Query Frame = 0
Query:    2 PIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPP-IDVAIKIHEDNEGAIKMAKN 237
            P+K LGE  +Y GC+   DR AG L + Q  Y + + ER+GV     +P     +     DS   +  +E       R ++G+L+W A +T+PDI+ A   +A++   P    WRAA  +L Y  RT   GI++         L+ + D DY +     RSVSGG VM AGGAI WFS+ QK    +++++EYVA+A M  E+ FLR V  F+ P  +   I ++EDNEGAI++AK+
Sbjct:  398 PVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERYGVEWGGGIPLPTTWRLW---DSDVNEPSVE----YPFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKH 627          
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 6.630e-42
Identity = 88/238 (36.97%), Postives = 137/238 (57.56%), Query Frame = 0
Query:    2 PIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPG-GETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVA-IKIHEDNEGAIKMAKN 237
            P K+LGE  ++LGC    DR AGT+++ Q  YI++V ERF + +TS +P+       S ++  ++  E EE   +  RE+VG LMW A  T+PDIS A   +A+ +  P    W+AAQK+L YL  T  L + Y  +    +   L ++D D+ +     RSVSG  V++A   + W S  QK  + ++SE+EY+A+   V E  F+  + +F+ P ++   I + EDNEGAI +A+N
Sbjct: 1001 PTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKICRTSSIPA-------SPANDNRSVMEDEEAGDVPFREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTVDDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAEN 1231          
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 6.810e-42
Identity = 83/237 (35.02%), Postives = 136/237 (57.38%), Query Frame = 0
Query:    2 PIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVA-IKIHEDNEGAIKMAKN 237
            P K+LGE  ++LGC    DR AGT ++ Q  YI++V ++F V  TS  P++         D+ ++  E E  + +  RE+VG+LMW A  T+ DI+ A   +A+ + NP    W+A+QK+L YL  T  L + +  +   +   L ++D D+ +  +  RSVSG  V++A   ++W S+ QK  + ++SE+EY+A+   V E  F+  + +F+ P      I + EDNEGAI +A+N
Sbjct:  203 PTKNLGEVKFFLGCEYIRDREAGTKEISQESYIRSVLDKFNVCSTSSTPASPAN------DNNRSLKEDEGAKDVPFREVVGSLMWIANRTRCDINIATRAVARQSHNPKKRDWKASQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAEN 433          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3J8V8_9STRA1.710e-4538.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
E2LZP6_MONPE5.390e-4438.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWK8_9PHAE1.020e-4337.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRZ9_9PHAE1.500e-4336.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4K468_9APHY2.530e-4337.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4L7S0_9AGAM4.980e-4335.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GID0_9APHY2.760e-4238.08Transposon Ty5-1 protein n=1 Tax=Sparassis crispa ... [more]
A0A6H5JR13_9PHAE3.860e-4237.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JB16_9PHAE6.630e-4236.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9B2_9PHAE6.810e-4235.02Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 69..237
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 69..237

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7998contigH-elongata_contig7998:5069..5779 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7998.15650.1mRNA_H-elongata_contig7998.15650.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7998 5069..5779 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7998.15650.1 ID=prot_H-elongata_contig7998.15650.1|Name=mRNA_H-elongata_contig7998.15650.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp
FPIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIVP
SAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAA
HQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWID
EDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKM
VNELRFLRHVKEFITPPIDVAIKIHEDNEGAIKMAKN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like