mRNA_H-elongata_contig101831.157.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101831.157.1
Unique NamemRNA_H-elongata_contig101831.157.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: D7FR97_ECTSI (Ribosome biogenesis protein NSA2 homolog n=3 Tax=PX clade TaxID=569578 RepID=D7FR97_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 4.990e-72
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1 
Query:    1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333
            + KVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV
Sbjct:  150 VTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 260
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BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: A0A7S2V588_9STRA (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V588_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.030e-66
Identity = 101/111 (90.99%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333
            + KVTFVG+ FTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHL ILGVKKNPSSP+YTQLGV+TKGTVIEVNVS+LGLVT SGKVVWGKYAQVTN+PELDGCINAVLLV
Sbjct:  150 VTKVTFVGDDFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLQILGVKKNPSSPMYTQLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 260
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BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: A0A7S3ZIB4_9EUKA (Ribosome biogenesis protein NSA2 homolog n=3 Tax=Chlorarachniophyceae TaxID=29197 RepID=A0A7S3ZIB4_9EUKA)

HSP 1 Score: 207 bits (528), Expect = 1.470e-65
Identity = 100/111 (90.09%), Postives = 104/111 (93.69%), Query Frame = 1 
Query:    1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333
            I KVT+VGEGFTRK PKYERFIRPTGLRFKKAHVTHPELK TFHLDI+GVKKNP SPLYT LGV+TKGTVIEVNVSDLGLVT SGKVVWGKYAQVTN+PE DGCINAVLLV
Sbjct:  157 ITKVTYVGEGFTRKPPKYERFIRPTGLRFKKAHVTHPELKCTFHLDIIGVKKNPQSPLYTNLGVITKGTVIEVNVSDLGLVTPSGKVVWGKYAQVTNNPENDGCINAVLLV 267
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BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: D3B3Z7_POLPP (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B3Z7_POLPP)

HSP 1 Score: 207 bits (527), Expect = 1.680e-65
Identity = 98/111 (88.29%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333
            + KVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELK+TF+LDILGVKKNP SP YTQLGV+TKGT+IEVNVSDLGLVTQ+GKVVWGK+AQVTN+PE DGCINA+LLV
Sbjct:  150 VTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKSTFYLDILGVKKNPQSPTYTQLGVITKGTIIEVNVSDLGLVTQTGKVVWGKFAQVTNNPENDGCINALLLV 260
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BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: A0A7S2SRB9_9STRA (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRB9_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.680e-65
Identity = 100/111 (90.09%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:    1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333
            + KV FVGE FTRK PKYERFIRPTGLRFKKAHVTHPEL+ATFHLDI+GVKKNPSS LYTQLGV+TKGTVIEVNVS+LGLVTQSGKVVWGKYAQVTN+PELDGCINAVLLV
Sbjct:  150 VTKVCFVGENFTRKNPKYERFIRPTGLRFKKAHVTHPELQATFHLDIIGVKKNPSSSLYTQLGVITKGTVIEVNVSELGLVTQSGKVVWGKYAQVTNNPELDGCINAVLLV 260
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BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: D8M881_BLAHO (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M881_BLAHO)

HSP 1 Score: 202 bits (515), Expect = 1.700e-64
Identity = 95/111 (85.59%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:    1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333
            I KVTFVGEGFTRK PKYERF+RPTGLRFKKAHVTHPELK TF+LDI+GVKKNP S LYT+LGV+TKGT+IEVNVS+LGLVT+SGKVVWGKYAQVTN+PE DGCINA+LLV
Sbjct:   90 ITKVTFVGEGFTRKPPKYERFVRPTGLRFKKAHVTHPELKTTFYLDIIGVKKNPQSKLYTELGVITKGTIIEVNVSELGLVTESGKVVWGKYAQVTNNPENDGCINAILLV 200
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BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: A0A7S2DND8_9STRA (Ribosome biogenesis protein NSA2 homolog n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DND8_9STRA)

HSP 1 Score: 204 bits (520), Expect = 2.620e-64
Identity = 99/111 (89.19%), Postives = 105/111 (94.59%), Query Frame = 1 
Query:    1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333
            + KVTFVG  FTRK PKYERFIRP+GLRFKKAHVTHPEL+ATFHLD+LGVKKNPSS LYTQLGV+TKGTVIEVNVSDLGLVT SGKVVWGKYAQVTN+PELDGCINAVLLV
Sbjct:  160 VTKVTFVGPNFTRKNPKYERFIRPSGLRFKKAHVTHPELQATFHLDLLGVKKNPSSNLYTQLGVITKGTVIEVNVSDLGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 270
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BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: A0A7S2AAY7_9EUKA (Hypothetical protein n=1 Tax=Stereomyxa ramosa TaxID=1078864 RepID=A0A7S2AAY7_9EUKA)

HSP 1 Score: 202 bits (514), Expect = 3.220e-64
Identity = 95/109 (87.16%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:    7 KVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333
            KVTFVGEGFTRK PKYERFIRP+ LRFKKAHVTHPELK TFHLDI+GVKKNPSSPLYT LGV+TKGT++EVNVSDLGLVT +GK+VWGKYAQVTN+PE DGCINAVLLV
Sbjct:  101 KVTFVGEGFTRKPPKYERFIRPSALRFKKAHVTHPELKTTFHLDIIGVKKNPSSPLYTSLGVVTKGTILEVNVSDLGLVTPTGKIVWGKYAQVTNNPENDGCINAVLLV 209
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BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: W7THK2_9STRA (Ribosome biogenesis protein NSA2 homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THK2_9STRA)

HSP 1 Score: 203 bits (517), Expect = 5.520e-64
Identity = 98/111 (88.29%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:    1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333
            + KVTFVGE FTRKAPK+ERFIRPTGLRFKKAHVTHP+L+ATF LDILGVKKNPSSP+YT LGV+TKGTVIEVNVS+LGLVT SGKVVWGKYAQVTN+PELDGCINAVLLV
Sbjct:  150 VTKVTFVGENFTRKAPKFERFIRPTGLRFKKAHVTHPDLQATFCLDILGVKKNPSSPMYTTLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 260
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BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: A0A7L1XHK7_9AVES (Ribosome biogenesis protein NSA2 homolog (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7L1XHK7_9AVES)

HSP 1 Score: 200 bits (509), Expect = 1.260e-63
Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 1 
Query:    1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333
            + KV FVG+GFTRK PKYERFIRP GLRFKKAHVTHPELKATF L ILGVKKNPSSPLYTQLGV+TKGTVIEVNVS+LGLVTQ GKV+WGKYAQVTN+PE DGCINAVLLV
Sbjct:   87 VTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTQLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR97_ECTSI4.990e-7298.20Ribosome biogenesis protein NSA2 homolog n=3 Tax=P... [more]
A0A7S2V588_9STRA1.030e-6690.99Ribosome biogenesis protein NSA2 homolog n=1 Tax=F... [more]
A0A7S3ZIB4_9EUKA1.470e-6590.09Ribosome biogenesis protein NSA2 homolog n=3 Tax=C... [more]
D3B3Z7_POLPP1.680e-6588.29Ribosome biogenesis protein NSA2 homolog n=1 Tax=P... [more]
A0A7S2SRB9_9STRA1.680e-6590.09Ribosome biogenesis protein NSA2 homolog n=1 Tax=R... [more]
D8M881_BLAHO1.700e-6485.59Ribosome biogenesis protein NSA2 homolog n=1 Tax=B... [more]
A0A7S2DND8_9STRA2.620e-6489.19Ribosome biogenesis protein NSA2 homolog n=2 Tax=D... [more]
A0A7S2AAY7_9EUKA3.220e-6487.16Hypothetical protein n=1 Tax=Stereomyxa ramosa Tax... [more]
W7THK2_9STRA5.520e-6488.29Ribosome biogenesis protein NSA2 homolog n=2 Tax=M... [more]
A0A7L1XHK7_9AVES1.260e-6387.39Ribosome biogenesis protein NSA2 homolog (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101831contigH-elongata_contig101831:681..1723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.1
Seed ortholog evalue8.2e-57
Seed eggNOG ortholog2880.D7FR97
KEGG koko:K14842
GOsGO:0000460,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG2007@1,KOG3163@2759
Ec32 orthologEc-26_002350.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S8e/ribosomal biogenesis NSA2
Ec32 orthologEc-26_002350.2
Exons2
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.6726213-CDS-H-elongata_contig101831:680..8631622929557.6726213-CDS-H-elongata_contig101831:680..863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101831 681..863 +
1691679069.2629015-CDS-H-elongata_contig101831:680..8631691679069.2629015-CDS-H-elongata_contig101831:680..863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101831 681..863 +
1622929557.6877544-CDS-H-elongata_contig101831:1570..17231622929557.6877544-CDS-H-elongata_contig101831:1570..1723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101831 1571..1723 +
1691679069.2749283-CDS-H-elongata_contig101831:1570..17231691679069.2749283-CDS-H-elongata_contig101831:1570..1723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101831 1571..1723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101831.157.1prot_H-elongata_contig101831.157.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101831 681..1723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101831.157.1

>prot_H-elongata_contig101831.157.1 ID=prot_H-elongata_contig101831.157.1|Name=mRNA_H-elongata_contig101831.157.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGV
KKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPE
LDGCINAVLLV*
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mRNA from alignment at H-elongata_contig101831:681..1723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101831.157.1 ID=mRNA_H-elongata_contig101831.157.1|Name=mRNA_H-elongata_contig101831.157.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-elongata_contig101831:681..1723+ (Himanthalia elongata Himel1 dioecious)
ATCGTGAAGGTTACCTTCGTGGGTGAGGGTTTCACGCGAAAAGCACCAAA
GTACGAACGCTTTATTCGCCCGACTGGTCTTCGATTCAAGAAGGCACACG
TAACCCACCCGGAACTAAAGGCTACTTTTCACCTCGACATTCTCGGGGTG
AAAAAGAACCCGAGCTCGCCCTTGTATACCCAGGTATGGCTTGTTAGAAT
ATATCGTTATCTGCCATAAGTGACAGGGTTGAACCACCCTTTCTAGTTTC
GCTCGATATTTTTAAACAAGTTCGCACACAAAACCAAACACAGCCTCGAC
AAGCTCTCTATAAACTTTCTGATTACCTAATAATAGCTGCGCCGTCGGTG
ATGCCTTGCATTTGTTGTCGAGGCAGAAAATCTATAATTTTTATCCTAAG
GGTGCATAGCACCCTTTCAATTTTTAAAGGCGATTCGAAGTTTAAGATCT
GCTGTCCGTTTCAAGTGTCGATCCGATTCGCCCCGAGACCATATCTGCTT
TTGATATGATCTTCACTGTTGTTACACTACTTTTGCACCGGAAGCTTGTT
GGTACGAGCTTACCCGAACAACATGGCGTCATACCTATCTCATCTCTCAT
CTCAAATTACTTGAGTAAAAAATGTACCAAAGGTCGCGCGCGTTGTTGCT
GCTGTAAGCGCTTTTGACCGCGAGTGTCTGAGGGTCCGGAAGGTGAAGCG
GTCGCAGGTCGGAGACTCAATCATGGTCAGGCAGCCCCAACATCTCCGCG
TAATGACATTTAGGTTGATGCAAAATATTTTCGTTTGTAGATGATCCTTG
ACAGTAGAGCGGTATATAGCCTAGACCTAGAACTAAAACTGTTTTTATGG
ATCAAATCCGCTTGCATCCTTTTTTCACTTGTCGTCGCAGCTAGGAGTCA
TGACCAAGGGTACGGTGATCGAGGTCAACGTGAGCGACCTTGGTCTTGTT
ACTCAGAGCGGAAAGGTTGTTTGGGGCAAGTATGCGCAAGTGACGAACTC
TCCAGAGCTGGACGGGTGCATCAATGCCGTTTTGCTAGTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig101831:681..1723+

>mRNA_H-elongata_contig101831.157.1 ID=mRNA_H-elongata_contig101831.157.1|Name=mRNA_H-elongata_contig101831.157.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig101831:681..1723+ (Himanthalia elongata Himel1 dioecious)
ATCGTGAAGGTTACCTTCGTGGGTGAGGGTTTCACGCGAAAAGCACCAAA
GTACGAACGCTTTATTCGCCCGACTGGTCTTCGATTCAAGAAGGCACACG
TAACCCACCCGGAACTAAAGGCTACTTTTCACCTCGACATTCTCGGGGTG
AAAAAGAACCCGAGCTCGCCCTTGTATACCCAGATCGTGAAGGTTACCTT
CGTGGGTGAGGGTTTCACGCGAAAAGCACCAAAGTACGAACGCTTTATTC
GCCCGACTGGTCTTCGATTCAAGAAGGCACACGTAACCCACCCGGAACTA
AAGGCTACTTTTCACCTCGACATTCTCGGGGTGAAAAAGAACCCGAGCTC
GCCCTTGTATACCCAGCTAGGAGTCATGACCAAGGGTACGGTGATCGAGG
TCAACGTGAGCGACCTTGGTCTTGTTACTCAGAGCGGAAAGGTTGTTTGG
GGCAAGTATGCGCAAGTGACGAACTCTCCAGAGCTGGACGGGTGCATCAA
TGCCGTTTTGCTAGTGTAGCTAGGAGTCATGACCAAGGGTACGGTGATCG
AGGTCAACGTGAGCGACCTTGGTCTTGTTACTCAGAGCGGAAAGGTTGTT
TGGGGCAAGTATGCGCAAGTGACGAACTCTCCAGAGCTGGACGGGTGCAT
CAATGCCGTTTTGCTAGTGTAG
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