mRNA_H-elongata_contig7998.15650.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA) HSP 1 Score: 166 bits (420), Expect = 1.710e-45 Identity = 93/239 (38.91%), Postives = 142/239 (59.41%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGV--TKTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVAIKIHEDNEGAIKMAKN 711
F +K+LGEA + LG I DR GTL + Q +Y+ V RF K + P G K LSK+ SP TDAE E+MR + ++G+L++ T T+PD+++ QL++F +NPG W+AA +VL+YL T+D GI Y G G+ L + D D+G+ D RSVSG +M+ G ++ S+ Q+ A +S+E+EY+AL+ E+ + R + + A ++ EDN+GAI +A N
Sbjct: 130 FKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMK-LSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSGN-NGKAVLEVYTDADWGSNLDGRRSVSGIMMMIGGAPGVFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRATLKDLGHEQVGATQVWEDNQGAIALASN 366
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE) HSP 1 Score: 165 bits (418), Expect = 5.390e-44 Identity = 92/239 (38.49%), Postives = 135/239 (56.49%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVT--KTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVAIKIHEDNEGAIKMAKN 711
F ++DLG SY LG IT +R L L Q QYI E FG+T K + P LSKS SPQT E+EEM +I VG+L++ ATMT+PDI++ A LA+FN NPG W+A + VL+YL T D+ + YG +P + + D D G D +S +G + + GA+ W S++Q + +S+E+EY+A E++ +R++ E + K+ DN+ IK+AKN
Sbjct: 308 FKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTPMTPNL-ILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYLKGTMDIKLEYGPDPTTNDLFVTYCDSDLGGNRDNGKSTTGYILKLGSGAVSWSSKLQPMVTLSSTEAEYIAAVAAGKEIKAMRNLLEELGYQSQQPAKLLIDNQSTIKVAKN 545
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE) HSP 1 Score: 160 bits (405), Expect = 1.020e-43 Identity = 90/237 (37.97%), Postives = 131/237 (55.27%), Query Frame = 1
Query: 4 PIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPP-IDVAIKIHEDNEGAIKMAKN 711
P+K LGE +Y GC+ DR AG L + Q Y + + ER GV +P + DS + +E R ++G+L+W A +T+PDI+ A +A++ P WRAA +L Y RT GI++ L+ + D DY + RSVSGG VM AGGAI WFS+ QK +++++EYVA+A M E+ FLR V F+ P + I ++EDNEGAI++AK+
Sbjct: 94 PVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERHGVEWGGGIPLPTTWRLW---DSDVNEPSVE----YPFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKH 323
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE) HSP 1 Score: 161 bits (407), Expect = 1.500e-43 Identity = 88/238 (36.97%), Postives = 133/238 (55.88%), Query Frame = 1
Query: 4 PIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIVPSAAGRKALS-KSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPP-IDVAIKIHEDNEGAIKMAKN 711
P+K LGE +Y GC+ DR AG L + Q Y + + ER+GV +P K +D P + R +VG+L+W A +T+PDI+ + +A+++ P W+AA +L Y RT GI++ L+ +++ DY + RSVSGG VM AGGAI WFS+ QK +++++EYVA+A M E+ FLR V F+ P + I ++EDNEGAI++AK+
Sbjct: 146 PVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEHPF--------RALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKH 375
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A4S4K468_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K468_9APHY) HSP 1 Score: 161 bits (407), Expect = 2.530e-43 Identity = 89/239 (37.24%), Postives = 140/239 (58.58%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVT--KTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVAIKIHEDNEGAIKMAKN 711
+P+ DLGE S+ LG + DR A TL L QH YI ++ RF T K S +P + L+KS P + A+I MR+I RE +G+LM+AA T+PDISFA LA+F+ NPG T W A ++V +YL T++L + YGG G L ++D D G + +++G ++ GGA+ W S+ Q++ +++E+EYVA E ++R + + P+D ++ D++ AI + K+
Sbjct: 169 YPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQ-LTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRG---LEGYVDAD-GASQEHRHAITGYVFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLLGEVFRPLDGPTTLYSDSQSAIALTKD 402
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A4S4L7S0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4L7S0_9AGAM) HSP 1 Score: 157 bits (396), Expect = 4.980e-43 Identity = 86/239 (35.98%), Postives = 136/239 (56.90%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIV--PSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVAIKIHEDNEGAIKMAKN 711
F + DLG S+ LG + DR+ L L Q QYI + ERF ++ + V P G + LSK+ +P+ EI M+ + R++VGALM+ A T+PDIS+A LA+F+ NPGP W+AA+ + +YL T+D+ +TY +P + D D+G D RS SG V M GAI W SR+Q + +++E+EY++ + E+ +LR++ ++ DN+ A+ +A+N
Sbjct: 22 FKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHR-LSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSGMVVKMGTGAISWASRLQTIVTLSTTEAEYISAVQSGQEIIWLRNLLSEFGYEFTGPSTLYVDNQSALAVARN 259
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A401GID0_9APHY (Transposon Ty5-1 protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GID0_9APHY) HSP 1 Score: 155 bits (393), Expect = 2.760e-42 Identity = 91/239 (38.08%), Postives = 134/239 (56.07%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVT--KTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVAIKIHEDNEGAIKMAKN 711
F ++DLG + LG I DR T+ L Q QYI + E +G++ K+ P G + LSK+ +PQT E E MR++ VGALM+ A T+PDI FA LA+FN NPGPT W A + V YL T DL + YG E L + D D+G D CRS G + GAI W S++Q + A +++E+EY+A + E+ ++R++ + + A ++ DN+ AI ++KN
Sbjct: 52 FKLRDLGSTQFLLGIDIKRDRAKHTISLSQRQYIVDMLECYGLSDCKSVSTPMDPGAE-LSKALAPQTQEETEYMRKVPYLSAVGALMYLAITTRPDIMFAISCLARFNANPGPTHWIAVKHVFCYLKGTMDLRLHYGPSDVKEF-FLTYTDSDFGGERDNCRSTGGYLEKVGTGAISWSSKLQSLIAQSTTEAEYIAAVEAGKEILWMRNLLTELGYTVSKASTLYTDNQSAISVSKN 288
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE) HSP 1 Score: 162 bits (409), Expect = 3.860e-42 Identity = 90/237 (37.97%), Postives = 132/237 (55.70%), Query Frame = 1
Query: 4 PIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPP-IDVAIKIHEDNEGAIKMAKN 711
P+K LGE +Y GC+ DR AG L + Q Y + + ER+GV +P + DS + +E R ++G+L+W A +T+PDI+ A +A++ P WRAA +L Y RT GI++ L+ + D DY + RSVSGG VM AGGAI WFS+ QK +++++EYVA+A M E+ FLR V F+ P + I ++EDNEGAI++AK+
Sbjct: 398 PVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERYGVEWGGGIPLPTTWRLW---DSDVNEPSVE----YPFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKH 627
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 162 bits (409), Expect = 6.630e-42 Identity = 88/238 (36.97%), Postives = 137/238 (57.56%), Query Frame = 1
Query: 4 PIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPG-GETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVA-IKIHEDNEGAIKMAKN 711
P K+LGE ++LGC DR AGT+++ Q YI++V ERF + +TS +P+ S ++ ++ E EE + RE+VG LMW A T+PDIS A +A+ + P W+AAQK+L YL T L + Y + + L ++D D+ + RSVSG V++A + W S QK + ++SE+EY+A+ V E F+ + +F+ P ++ I + EDNEGAI +A+N
Sbjct: 1001 PTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKICRTSSIPA-------SPANDNRSVMEDEEAGDVPFREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTVDDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAEN 1231
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE) HSP 1 Score: 161 bits (408), Expect = 6.810e-42 Identity = 83/237 (35.02%), Postives = 136/237 (57.38%), Query Frame = 1
Query: 4 PIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIVPSAAGRKALSKSDSPQTDAEIEEMRQISCREIVGALMWAATMTKPDISFAAHQLAKFNDNPGPTQWRAAQKVLQYLWRTRDLGITYGGEPGGETKLLAWIDEDYGTCPDTCRSVSGGAVMMAGGAIIWFSRVQKVTAAASSESEYVALAKMVNELRFLRHVKEFITPPIDVA-IKIHEDNEGAIKMAKN 711
P K+LGE ++LGC DR AGT ++ Q YI++V ++F V TS P++ D+ ++ E E + + RE+VG+LMW A T+ DI+ A +A+ + NP W+A+QK+L YL T L + + + + L ++D D+ + + RSVSG V++A ++W S+ QK + ++SE+EY+A+ V E F+ + +F+ P I + EDNEGAI +A+N
Sbjct: 203 PTKNLGEVKFFLGCEYIRDREAGTKEISQESYIRSVLDKFNVCSTSSTPASPAN------DNNRSLKEDEGAKDVPFREVVGSLMWIANRTRCDINIATRAVARQSHNPKKRDWKASQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAEN 433 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7998.15650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7998.15650.1 >prot_H-elongata_contig7998.15650.1 ID=prot_H-elongata_contig7998.15650.1|Name=mRNA_H-elongata_contig7998.15650.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp FPIKDLGEASYYLGCHITWDRNAGTLKLDQHQYIQTVAERFGVTKTSIVPback to top mRNA from alignment at H-elongata_contig7998:5069..5779- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7998.15650.1 ID=mRNA_H-elongata_contig7998.15650.1|Name=mRNA_H-elongata_contig7998.15650.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=711bp|location=Sequence derived from alignment at H-elongata_contig7998:5069..5779- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7998:5069..5779- >mRNA_H-elongata_contig7998.15650.1 ID=mRNA_H-elongata_contig7998.15650.1|Name=mRNA_H-elongata_contig7998.15650.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig7998:5069..5779- (Himanthalia elongata Himel1 dioecious)back to top |