mRNA_H-elongata_contig7998.15648.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7998.15648.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE) HSP 1 Score: 194 bits (494), Expect = 7.940e-50 Identity = 146/444 (32.88%), Postives = 183/444 (41.22%), Query Frame = 1
Query: 4 KVQRAFFAKDPAGMATHVCTRDYFNKVWKGYFPKLKLKRNGDFMLCEICTLLKEKNHGQAGSRGIQNQAERAKDMQFYGDHVEVG*TPKFVFCFVAYNNHLRFEIIATKCCKKNNIVIHRIRLARREPRSSLQREN*IWRRDCQEKRHTMGKCIHDG*CCQPEQLRHPSGCFQRSWSR*QVDGSEHIIGYKVFRR*LKE*NSLRWYLSHNNLAFRQLKA*QPVRRNPNPRTLHSSVHSF--AGYAERQKIYGVFVAGVIMQVFMIPQTLDTGPTPVHIYRTVCKS*SYLLLGHCYSLCIFLPQSLNVRPVTLFQVSRLYLD*VCRGFRNLCVCFLILSSWT*RKGRATKYPAHICPALFSFRCLYFVCTGSNMVCTTLYTQFMELYFKWNKPLGDVFIQMDNTVSENKNNHIMGFLAALVARGVMRSVTLCFMMVGHTHIKIDQ 1329
K R + +DPA +A +C+++YFN+VW +F LKLK NGDFMLCEICTLLKEK HGQAGSRG+ ++AER + Y +H++ ++ R+ AR E ++++ + N T + ++ QVD + + +N A P+ S H GYAERQKIYG V+G++MQVFMIPQ L T GSNMVCTTL+T FMEL +W LGDVFIQMDNTVSENKNN IMGFLAALV RGVMRSVTLCFMMVGHTHI+IDQ
Sbjct: 291 KNTRELYGQDPASLAERLCSKNYFNQVWSAHFGNLKLKPNGDFMLCEICTLLKEKIHGQAGSRGVLDEAERERHQSVYKEHLQ-------------------------------DVERDRMYGARLENQAAVAKSN-----------GTPWETVYL-----------------------QVDAA-----------------------NQSNFAT-------PIGA--------SQAHGVDDRGYAERQKIYGALVSGIMMQVFMIPQILGT--------------------------------------------------------------------------------------------------GSNMVCTTLFTLFMELTLQWKHSLGDVFIQMDNTVSENKNNFIMGFLAALVGRGVMRSVTLCFMMVGHTHIQIDQ 533
BLAST of mRNA_H-elongata_contig7998.15648.1 vs. uniprot
Match: A0A6H5KL03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL03_9PHAE) HSP 1 Score: 119 bits (297), Expect = 2.460e-24 Identity = 54/76 (71.05%), Postives = 64/76 (84.21%), Query Frame = 1
Query: 1102 TGSNMVCTTLYTQFMELYFKWNKPLGDVFIQMDNTVSENKNNHIMGFLAALVARGVMRSVTLCFMMVGHTHIKIDQ 1329
TG+N+V T LY QFMEL W LGDV +Q+DNTVSENKNN++MG LAA+V RG+MR+VTLCFMMVGHTHI+IDQ
Sbjct: 188 TGTNLVATALYYQFMELTLSWGHTLGDVTVQVDNTVSENKNNYLMGILAAMVGRGIMRTVTLCFMMVGHTHIQIDQ 263
BLAST of mRNA_H-elongata_contig7998.15648.1 vs. uniprot
Match: A0A6H5L233_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L233_9PHAE) HSP 1 Score: 105 bits (262), Expect = 5.190e-22 Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 3
Query: 1515 AKAVKGRNVFSREHLAEVFESAYTTLPVKCRTLESLANFKDLVKPVTGRIYNISKFQAFKISKEGSAIVVKVKKKMHHDDWLGFS 1769
AKAV G +F+RE + + F Y + VKCRTLE LANFK+LV PVT RI I+ ++AFKI K+G ++VV VKKKMHH+DWLGFS
Sbjct: 86 AKAVGGVEIFTREEVGDAFRRGYKKIQVKCRTLEHLANFKELVAPVTRRIPIITNYRAFKIYKKGPSVVVTVKKKMHHEDWLGFS 170
BLAST of mRNA_H-elongata_contig7998.15648.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 6.050e-14 Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 1105 GSNMVCTTLYTQFMELYFKWNKP-----LGDVFIQMDNTVSENKNNHIMGFLAALVARGVMRSVTLCFMMVGHTHIKIDQ 1329
GSN+VCT L+ L W KP + + +Q+DN V ENKNN ++ F+ LVA GV+ S +CF++VGHTHIKIDQ
Sbjct: 10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQ 89
BLAST of mRNA_H-elongata_contig7998.15648.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 5.690e-13 Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 1105 GSNMVCTTLYTQFMELYFKWNKP-----LGDVFIQMDNTVSENKNNHIMGFLAALVARGVMRSVTLCFMMVGHTHIKIDQ 1329
GSN+VCT L+ L W KP + + +Q+DN V ENKNN ++ F+ LVA GV+ S +CF++VGHTHIKIDQ
Sbjct: 10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQ 89
BLAST of mRNA_H-elongata_contig7998.15648.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 3.010e-12 Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 1105 GSNMVCTTLYTQFMELYFKWNKPLGDVF------IQMDNTVSENKNNHIMGFLAALVARGVMRSVTLCFMMVGHTHIKIDQQNTYIYI 1350
GSN+ CTTL+ L W KP G+ F +Q+DN V ENKNN +M F+ LVA GV+ +CF+++GHTHIKIDQ + +++
Sbjct: 10 GSNLECTTLWLALKRLSAMWTKP-GERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFSRLFV 96
BLAST of mRNA_H-elongata_contig7998.15648.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 3.100e-11 Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 1105 GSNMVCTTLYTQFMELYFKWNKP-----LGDVFIQMDNTVSENKNNHIMGFLAALVARGVMRSVTLCFMMVGHTHIKIDQ 1329
GSN+VCT L+ L KP + + +Q+DN V ENKNN ++ F+ LVA GV+ S +CF++VGHTHIKIDQ
Sbjct: 122 GSNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQ 201
BLAST of mRNA_H-elongata_contig7998.15648.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 9.270e-11 Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = 3
Query: 1512 FAKAVKGRNVFSREHLAEVFESAYTTLPVKCRTLESLANFKDLVKPVTGRIYNISKFQAFKISKEGSAIV-VKVKKKMHHDDWLG 1763
F++ +KG+N+F+R HLAE ++YT +PV C TL + NFK L+ R+ NI+ ++AF++ K G V V+VKK MH +W G
Sbjct: 273 FSRGIKGKNIFTRTHLAEELRASYTEVPVFCSTLRNEGNFKGLLIGRVNRVPNITTYRAFRVEKGGDGRVKVRVKKHMHGAEWNG 357
BLAST of mRNA_H-elongata_contig7998.15648.1 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 5.650e-10 Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 1
Query: 994 CFLILSSWT*RKGRATKYP--AHICPALFSFRCLYFVCTGSNMVCTTLYTQFMELYFKWNKP-----LGDVFIQMDNTVSENKNNHIMGFLAALVARGVMRSVTLCFMMVGHTHIKID 1326
CF + S GR P A PAL +C GSN+VCT L+ L W KP + + +Q+ N V E KNN ++ F+ LVA GV+ S +CF++VGHT IKID
Sbjct: 253 CFFTVVSLLGVGGRIPIAPQTAACVPAL--------LCGGSNLVCTALWLALKRLSAMWAKPGQRFYIKRLHLQLHNCVGEKKNNIVLAFIGGLVAAGVVVSAEVCFLIVGHTLIKID 362
BLAST of mRNA_H-elongata_contig7998.15648.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 6.870e-7 Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 1162 WNKPLGDVFIQMDNTVSENKNNHIMGFLAALVARGVMRSVTLCFMMVGHTHIKIDQ 1329
W + L DN V ENKNN ++ F+ LVA GV+ S +CF++VGHTHIKIDQ
Sbjct: 201 WPEVLHQASPPSDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQ 256 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7998.15648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7998.15648.1 >prot_H-elongata_contig7998.15648.1 ID=prot_H-elongata_contig7998.15648.1|Name=mRNA_H-elongata_contig7998.15648.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp MVCTTLYTQFMELYFKWNKPLGDVFIQMDNTVSENKNNHIMGFLAALVARback to top mRNA from alignment at H-elongata_contig7998:325..2279- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7998.15648.1 ID=mRNA_H-elongata_contig7998.15648.1|Name=mRNA_H-elongata_contig7998.15648.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1955bp|location=Sequence derived from alignment at H-elongata_contig7998:325..2279- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7998:325..2279- >mRNA_H-elongata_contig7998.15648.1 ID=mRNA_H-elongata_contig7998.15648.1|Name=mRNA_H-elongata_contig7998.15648.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig7998:325..2279- (Himanthalia elongata Himel1 dioecious)back to top |