mRNA_H-elongata_contig79931.15641.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79931.15641.1
Unique NamemRNA_H-elongata_contig79931.15641.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79931.15641.1 vs. uniprot
Match: D7FKU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKU5_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.740e-11
Identity = 43/99 (43.43%), Postives = 52/99 (52.53%), Query Frame = 1 
Query:    1 DTRQTEDIGGEWDGVDLASAPCLLSRAEADKNPSPYEEEATDCATLNTGTMGRRVLGNGGGPEEELIPARPVTPPASLVYKPCMRLRIAQDVPRELYIM 297
            D+R  ED G  WDGVDLAS+PCL      D        E  + A  N G    RV G    P    +P RP TPP  LVYKPC+ +++A +VP EL  M
Sbjct:  151 DSRHAEDTGS-WDGVDLASSPCLQQYMVGDNI------EDVESAAGNVGVQ-ERVYGR---PSTAQVPVRPSTPPTLLVYKPCISIKVADNVPSELQAM 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79931.15641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKU5_ECTSI3.740e-1143.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79931contigH-elongata_contig79931:225..2533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_001420.1
Exons7
Model size813
Cds size813
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.081322-CDS-H-elongata_contig79931:224..2871622931204.081322-CDS-H-elongata_contig79931:224..287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 225..287 -
1691679740.3761475-CDS-H-elongata_contig79931:224..2871691679740.3761475-CDS-H-elongata_contig79931:224..287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 225..287 -
1622931204.097075-CDS-H-elongata_contig79931:420..5151622931204.097075-CDS-H-elongata_contig79931:420..515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 421..515 -
1691679740.3849428-CDS-H-elongata_contig79931:420..5151691679740.3849428-CDS-H-elongata_contig79931:420..515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 421..515 -
1622931204.111128-CDS-H-elongata_contig79931:714..8261622931204.111128-CDS-H-elongata_contig79931:714..826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 715..826 -
1691679740.3942294-CDS-H-elongata_contig79931:714..8261691679740.3942294-CDS-H-elongata_contig79931:714..826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 715..826 -
1622931204.1493766-CDS-H-elongata_contig79931:1131..12071622931204.1493766-CDS-H-elongata_contig79931:1131..1207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 1132..1207 -
1691679740.410446-CDS-H-elongata_contig79931:1131..12071691679740.410446-CDS-H-elongata_contig79931:1131..1207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 1132..1207 -
1622931204.1659849-CDS-H-elongata_contig79931:1604..17451622931204.1659849-CDS-H-elongata_contig79931:1604..1745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 1605..1745 -
1691679740.4186404-CDS-H-elongata_contig79931:1604..17451691679740.4186404-CDS-H-elongata_contig79931:1604..1745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 1605..1745 -
1622931204.1928117-CDS-H-elongata_contig79931:2051..21231622931204.1928117-CDS-H-elongata_contig79931:2051..2123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 2052..2123 -
1691679740.4266455-CDS-H-elongata_contig79931:2051..21231691679740.4266455-CDS-H-elongata_contig79931:2051..2123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 2052..2123 -
1622931204.214821-CDS-H-elongata_contig79931:2279..25331622931204.214821-CDS-H-elongata_contig79931:2279..2533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 2280..2533 -
1691679740.4379842-CDS-H-elongata_contig79931:2279..25331691679740.4379842-CDS-H-elongata_contig79931:2279..2533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79931 2280..2533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79931.15641.1prot_H-elongata_contig79931.15641.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79931 225..2533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79931.15641.1

>prot_H-elongata_contig79931.15641.1 ID=prot_H-elongata_contig79931.15641.1|Name=mRNA_H-elongata_contig79931.15641.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp
DTRQTEDIGGEWDGVDLASAPCLLSRAEADKNPSPYEEEATDCATLNTGT
MGRRVLGNGGGPEEELIPARPVTPPASLVYKPCMRLRIAQDVPRELYIMP
GAPEPGSTRRVIQQSSQTDEANDGSGLASLQVGIPLKQMYPRRPNAACRT
EPRYFGKVSQKRSAEAPSDKPRFRHASLPEPTFRQTSYGKAWYMDPNLWG
MAGSSEFMNLIREEDDAEGAKQLLDYTEAIKGTIPTLFSATRFVTYIRQQ
GLRIPAYLESTDRAMRAEKPR
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mRNA from alignment at H-elongata_contig79931:225..2533-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79931.15641.1 ID=mRNA_H-elongata_contig79931.15641.1|Name=mRNA_H-elongata_contig79931.15641.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2309bp|location=Sequence derived from alignment at H-elongata_contig79931:225..2533- (Himanthalia elongata Himel1 dioecious)
GATACAAGACAAACGGAAGACATAGGAGGAGAGTGGGACGGCGTAGACTT
AGCGTCTGCTCCATGCTTACTAAGTCGGGCAGAGGCGGACAAAAATCCTT
CCCCCTATGAAGAAGAAGCTACAGACTGCGCCACCTTAAACACGGGTACA
ATGGGGCGGCGAGTCCTTGGTAATGGTGGAGGGCCAGAAGAAGAGCTGAT
CCCAGCGCGGCCGGTGACCCCCCCAGCCTCGCTGGTGTACAAACCATGCA
TGAGGTATGTATTGATATATGATCTGGGTTTGACTGTCTACTATTATGAT
GTCCATCAATTTTATATTGACCCCAACATGCGGATATTGCGAATTTAATA
TTGACGAGTTAGGTACGCATTGAGGCGCAGGATGACTACTGTATCTTGTA
ACGCTTACAGGTTAAGGATAGCTCAAGACGTACCACGGGAATTGTATATT
ATGCCTGGAGCCCCAGAACCAGGATCGACTCGGTGAGATCACCTTGACAA
CCTCGGTAACCTTAGGGACGCGAAACCTGTAACAAAGAAAGGCATATAAG
AACACAGCTGAGCGTATCTTAAAAAAAATGCCTTTGAATTATCGGTAAGT
GGAGGTCGTTGGCCGAACACGAGAACTTTAATATTGGACAAGCGCAATGT
TGATTGTCAGTACAGCAATGCTCAGCCGCAGTTCGTGTTTATATTTTTAT
ACTGTAGTAGATTTCTTTAAAAAACGCAAGCCGCCACCATGCTCGGTACG
AAGAAACGTGAACGAACGAAGATCAATGCATTCATTAGTCGTGTTATCCA
ACAATCAAGTCAAACAGATGAGGCTAATGATGGTTCTGGTCTGGCGAGTC
TTCAAGTCGGGATACCTCTCAAGCAAATGTACCCAAGACGGCCGAACGCG
GCTTGTCGCACGGAACCTCGATACTTCGGGTAAGTTATTCCTTACGTTGT
TAATGGAATCGGAAGTCGACCTTTACCCTTCTGCATCCACGCCAAACGCA
TCCGCCGACAAATTCCATCGTGACTTTAGATGTAGTCAGTAGTATGTATT
TATCACCACCGGATTACAATCGATCGTAAATAAATGTGCGACACATACAT
ACGTATTGTTATTTTAAAAACCTGGAACTCATTCCAACCTTCCGAACATC
CACACCTTCTTAGCGCCGTGAGGGTTACCATCGAGGGGACCAACTATCGT
CAAGTTCGAATGTGTACATTACTACCTTTGAGCACAAAATATAATATAAT
TAAGGCGTTCTCGAACAGAACTACTACATTGTTCTCTTTTTTATTCTCAA
ATCATCACCCACCCCAGGCGAAGTAGTAAGGTGTCACAAAAGCGGAGTGC
CGAAGCTCCATCGGATAAACCACGATTCCGTCACGCTTCACTACCTGAAC
CGGTGGGGTTTTCCCTTTCTTTTCATAATATCTACGCGACAAAAACGAAC
GAAGCACTTAATATTTTGTACCGATATACGCTGACGTCCGCGCATATTTG
ACCAGGAGAGGTCCTCGAAGCAGATCATTGCTCTACAATACGGACCACCC
ATGGAAATATTGACTCAATGGGACTCGTGATCGCTCTCCTGTTCCAATGA
GTGATACATATGTGTTAGTTATCGGGTTTATTTTATGTATTTTCGGTCAT
TGATCCCCCTTGGTCGTGGTTGTTATCGTGGAATGGCGCCTTTACAAATC
ACGGTAGACTTTCCGCCAGACATCATACGGCAAGGCGTGGTACATGGACC
CGAACCTTTGGGGAATGGCAGGCTCGAGCGAATTCATGAATTTGATCCGA
GAGGAAGATGATGCGGAAGGTAGGACCGCAGTAGTGATCTTTAAAAATAG
TTCAATGAGATACTTAGCGGCCGACTGAGTGCATGTCGCATGGTTTAACC
CCACCACCAAACAGACAGTAGGATAAGCGCGTGTCGCATCGCCCCCATAT
GACTTCGTATTGCATGCAATTATAGTCGCCCCCTTTGCGCGTTTATTACA
ATTGATATAATACCACAGGAGCAAAGCAGCTGTTGGATTACACGGAGGCA
ATAAAGGGCACCATTCCGACGCTCTTCAGTGCCACCCGCTTTGTCACATA
CATCCGACAGCAGGTAGGATTCACAACCTTGATGAGTTTAGTCCGCCGCG
TAAGTTAAGGTCACTGTGCGATATCGATCACGAAAAACTTGTACTCACGA
TCGCGAATACATACATTGTATTGGTTGATTGGGGTTTCCATGACAGGGTC
TCCGTATACCAGCCTACCTCGAGAGCACTGATCGCGCAATGAGAGCAGAA
AAGCCAAGA
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Coding sequence (CDS) from alignment at H-elongata_contig79931:225..2533-

>mRNA_H-elongata_contig79931.15641.1 ID=mRNA_H-elongata_contig79931.15641.1|Name=mRNA_H-elongata_contig79931.15641.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig79931:225..2533- (Himanthalia elongata Himel1 dioecious)
GATACAAGACAAACGGAAGACATAGGAGGAGAGTGGGACGGCGTAGACTT
AGCGTCTGCTCCATGCTTACTAAGTCGGGCAGAGGCGGACAAAAATCCTT
CCCCCTATGAAGAAGAAGCTACAGACTGCGCCACCTTAAACACGGGTACA
ATGGGGCGGCGAGTCCTTGGTAATGGTGGAGGGCCAGAAGAAGAGCTGAT
CCCAGCGCGGCCGGTGACCCCCCCAGCCTCGCTGGTGTACAAACCATGCA
TGAGGATACAAGACAAACGGAAGACATAGGAGGAGAGTGGGACGGCGTAG
ACTTAGCGTCTGCTCCATGCTTACTAAGTCGGGCAGAGGCGGACAAAAAT
CCTTCCCCCTATGAAGAAGAAGCTACAGACTGCGCCACCTTAAACACGGG
TACAATGGGGCGGCGAGTCCTTGGTAATGGTGGAGGGCCAGAAGAAGAGC
TGATCCCAGCGCGGCCGGTGACCCCCCCAGCCTCGCTGGTGTACAAACCA
TGCATGAGGTTAAGGATAGCTCAAGACGTACCACGGGAATTGTATATTAT
GCCTGGAGCCCCAGAACCAGGATCGACTCGGTTAAGGATAGCTCAAGACG
TACCACGGGAATTGTATATTATGCCTGGAGCCCCAGAACCAGGATCGACT
CGTCGTGTTATCCAACAATCAAGTCAAACAGATGAGGCTAATGATGGTTC
TGGTCTGGCGAGTCTTCAAGTCGGGATACCTCTCAAGCAAATGTACCCAA
GACGGCCGAACGCGGCTTGTCGCACGGAACCTCGATACTTCGGTCGTGTT
ATCCAACAATCAAGTCAAACAGATGAGGCTAATGATGGTTCTGGTCTGGC
GAGTCTTCAAGTCGGGATACCTCTCAAGCAAATGTACCCAAGACGGCCGA
ACGCGGCTTGTCGCACGGAACCTCGATACTTCGGTAAGGTGTCACAAAAG
CGGAGTGCCGAAGCTCCATCGGATAAACCACGATTCCGTCACGCTTCACT
ACCTGAACCGTAAGGTGTCACAAAAGCGGAGTGCCGAAGCTCCATCGGAT
AAACCACGATTCCGTCACGCTTCACTACCTGAACCGACTTTCCGCCAGAC
ATCATACGGCAAGGCGTGGTACATGGACCCGAACCTTTGGGGAATGGCAG
GCTCGAGCGAATTCATGAATTTGATCCGAGAGGAAGATGATGCGGAAGAC
TTTCCGCCAGACATCATACGGCAAGGCGTGGTACATGGACCCGAACCTTT
GGGGAATGGCAGGCTCGAGCGAATTCATGAATTTGATCCGAGAGGAAGAT
GATGCGGAAGGAGCAAAGCAGCTGTTGGATTACACGGAGGCAATAAAGGG
CACCATTCCGACGCTCTTCAGTGCCACCCGCTTTGTCACATACATCCGAC
AGCAGGAGCAAAGCAGCTGTTGGATTACACGGAGGCAATAAAGGGCACCA
TTCCGACGCTCTTCAGTGCCACCCGCTTTGTCACATACATCCGACAGCAG
GGTCTCCGTATACCAGCCTACCTCGAGAGCACTGATCGCGCAATGAGAGC
AGAAAAGCCAAGAGGTCTCCGTATACCAGCCTACCTCGAGAGCACTGATC
GCGCAATGAGAGCAGAAAAGCCAAGA
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