mRNA_H-elongata_contig120272.1564.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig120272.1564.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 218 bits (555), Expect = 1.830e-71 Identity = 114/123 (92.68%), Postives = 120/123 (97.56%), Query Frame = 1
Query: 4 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 372
M+GKGKGGRG KKST+RS+KAGLQFPVGR+GRFLKKGKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct: 1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_H-elongata_contig120272.1564.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 216 bits (551), Expect = 4.400e-70 Identity = 113/123 (91.87%), Postives = 119/123 (96.75%), Query Frame = 1
Query: 1 IMTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 369
M+GKGKGGRG KKST+RS+KAGLQFPVGR+GRFLKKGKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct: 45 TMSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_H-elongata_contig120272.1564.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 209 bits (533), Expect = 6.320e-68 Identity = 110/119 (92.44%), Postives = 116/119 (97.48%), Query Frame = 1
Query: 4 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG KKSTS+SSKAGLQFPV RIGR+LK+GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-elongata_contig120272.1564.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 209 bits (533), Expect = 3.250e-67 Identity = 110/119 (92.44%), Postives = 116/119 (97.48%), Query Frame = 1
Query: 4 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG KKSTS+SSKAGLQFPV RIGR+LK+GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 52 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_H-elongata_contig120272.1564.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 205 bits (522), Expect = 1.780e-66 Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 1
Query: 4 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG KK TSRS+KAGLQFPVGRIGRF+K+GKYS RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG-KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-elongata_contig120272.1564.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 203 bits (517), Expect = 2.040e-65 Identity = 101/121 (83.47%), Postives = 116/121 (95.87%), Query Frame = 1
Query: 10 GKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 372
GKGKGGRGDKK+ S+S+KAGLQFPVGR+GRFLK+G+Y++RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK K
Sbjct: 5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125
BLAST of mRNA_H-elongata_contig120272.1564.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 201 bits (512), Expect = 8.250e-65 Identity = 106/121 (87.60%), Postives = 113/121 (93.39%), Query Frame = 1
Query: 4 MTGKGKGGRGD--KKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M GKGKGGRG KKSTS+SSKAGLQFPV R+GRFLK G+Y++RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct: 1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKK 121
BLAST of mRNA_H-elongata_contig120272.1564.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 201 bits (511), Expect = 9.340e-65 Identity = 101/119 (84.87%), Postives = 114/119 (95.80%), Query Frame = 1
Query: 4 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG+KKST+ S+KAGLQFPVGRIGR+L++GKY+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct: 1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119
BLAST of mRNA_H-elongata_contig120272.1564.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 201 bits (511), Expect = 9.340e-65 Identity = 103/122 (84.43%), Postives = 114/122 (93.44%), Query Frame = 1
Query: 4 MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 369
M+GKGKGGRG KKST+ S+KAGLQFPVGRIGR+L++GKY+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_H-elongata_contig120272.1564.1 vs. uniprot
Match: A0A150G9R6_GONPE (Histone H2A n=2 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G9R6_GONPE) HSP 1 Score: 202 bits (514), Expect = 2.790e-64 Identity = 104/120 (86.67%), Postives = 111/120 (92.50%), Query Frame = 1
Query: 1 IMTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
IM G+GKG KK+ SRSSKAGLQFPVGRI R+LKKGKY++R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIVPRHIQLA+RNDEEL KLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 56 IMAGRGKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKK 175 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120272.1564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig120272.1564.1 >prot_H-elongata_contig120272.1564.1 ID=prot_H-elongata_contig120272.1564.1|Name=mRNA_H-elongata_contig120272.1564.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp MTGKGKGGRGDKKSTSRSSKAGLQFPVGRIGRFLKKGKYSQRVGAGAPVYback to top mRNA from alignment at H-elongata_contig120272:20..394- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig120272.1564.1 ID=mRNA_H-elongata_contig120272.1564.1|Name=mRNA_H-elongata_contig120272.1564.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig120272:20..394- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig120272:20..394- >mRNA_H-elongata_contig120272.1564.1 ID=mRNA_H-elongata_contig120272.1564.1|Name=mRNA_H-elongata_contig120272.1564.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig120272:20..394- (Himanthalia elongata Himel1 dioecious)back to top |