mRNA_H-elongata_contig79858.15637.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79858.15637.1
Unique NamemRNA_H-elongata_contig79858.15637.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79858.15637.1 vs. uniprot
Match: D8LCR7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR7_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.950e-36
Identity = 61/85 (71.76%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 MVGDIGFDPFGLAEAFPVKFLREGELKNGRVAMLAVVGWIVSEVVHLPDPRFSAENPVDAMATVGSGPMWLIFFFIGFVEVVSHN 255
            MVGDIGFDPFG A  FPVKF+RE ELK+GRVAMLAVVGW+VSEVVH+P   + +ENPVDAMA VG GPM  IF F GF+E   HN
Sbjct:   81 MVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 165          
BLAST of mRNA_H-elongata_contig79858.15637.1 vs. uniprot
Match: A0A6V1U3D5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U3D5_HETAK)

HSP 1 Score: 106 bits (264), Expect = 3.020e-27
Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 MVGDIGFDPFGLAEAFPVKFLREGELKNGRVAMLAVVGWIVSEVVHLPDPRFSAENPVDAMATVGSGPMWLIFFFIGFVEVVSHN 255
            M+GD GFDPFG ++ F +K++RE ELK+GRV+MLAVVG++VS+ VHLP P + + NP+DA++ VG  P+  IF F GF+E   + 
Sbjct:   17 MIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIDALSMVGPQPLAQIFLFCGFLEFTMNK 101          
BLAST of mRNA_H-elongata_contig79858.15637.1 vs. uniprot
Match: A0A7S4DC05_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC05_HETAK)

HSP 1 Score: 105 bits (263), Expect = 6.190e-27
Identity = 44/85 (51.76%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 MVGDIGFDPFGLAEAFPVKFLREGELKNGRVAMLAVVGWIVSEVVHLPDPRFSAENPVDAMATVGSGPMWLIFFFIGFVEVVSHN 255
            M+GD GFDPFG ++ F +K++RE ELK+GRV+MLAVVG++VS+ VHLP P + + NP++A++ VG  P+  IF F GF+E   + 
Sbjct:   61 MIGDKGFDPFGFSDTFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIEALSMVGPQPLAQIFLFCGFLEFTQNK 145          
BLAST of mRNA_H-elongata_contig79858.15637.1 vs. uniprot
Match: A0A835Z4D2_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.910e-26
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    4 VGDIGFDPFGLAEAFPVKFLREGELKNGRVAMLAVVGWIVSEVVHLPDPRFSAENPVDAMATVGSGPMWLIFFFIGFVEVVSHN 255
            VG+  FDPF L+E  P+ F+RE ELK+GR+AMLAVVG++VSE++H+P   + A NPVDA+  VG+ PM  IF F GF+E V H 
Sbjct:   18 VGNAEFDPFSLSELLPMAFVRESELKHGRIAMLAVVGFVVSELIHIPGEAYQASNPVDAVNMVGAQPMLQIFAFCGFLESVFHK 101          
BLAST of mRNA_H-elongata_contig79858.15637.1 vs. uniprot
Match: L1IG04_GUITC (Light-harvesting Chl a protein 2 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IG04_GUITC)

HSP 1 Score: 95.5 bits (236), Expect = 1.720e-22
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 MVGDIGFDPFGLAEAFPVKFLREGELKNGRVAMLAVVGWIVSEVVHLPDPRFSAENPVDAMATVGSGPMWLIFFFIGFVEVVSHN 255
            M GD+GFDP G +  F +K+LRE ELK+GRV ML  +G++V E   LP P F  + P++A  TV +G +W IFF +G +E++S+N
Sbjct:   56 MAGDVGFDPLGFSNYFDLKWLREAELKHGRVCMLGTLGFLVQEKFQLPLPGFGEKLPIEAFFTVPTGGLWQIFFTLGAIEILSNN 140          
BLAST of mRNA_H-elongata_contig79858.15637.1 vs. uniprot
Match: A0A1X6NTR2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTR2_PORUM)

HSP 1 Score: 95.1 bits (235), Expect = 2.430e-22
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 MVGDIGFDPFGLAEAFPVKFLREGELKNGRVAMLAVVGWIVSEVVHLPDPRFSAENPVDAMATVGSGPMWLIFFFIGFVEVVSHNVSL 264
            M GD+GFDP  L+    +K+LREGELKNGRVAMLA +G +V E VHLP P F+     DA   V +G +W +F   G  E VSH   L
Sbjct:   51 MAGDVGFDPLNLSGFIDIKWLREGELKNGRVAMLAFLGVLVQEFVHLPSPLFANPVATDAFFQVPAGGLWQVFLACGLCEFVSHRGKL 138          
BLAST of mRNA_H-elongata_contig79858.15637.1 vs. uniprot
Match: L1IG53_GUITC (Light-harvesting Chl a protein 9 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IG53_GUITC)

HSP 1 Score: 95.1 bits (235), Expect = 2.710e-22
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 MVGDIGFDPFGLAEAFPVKFLREGELKNGRVAMLAVVGWIVSEVVHLPDPRFSAENPV--DAMATVGSGPMWLIFFFIGFVEVVSHNVSL 264
            MVGD+GFDPFG +  + +K+LRE ELK+GRV MLA +G+IV E VHLP    S  NPV  +A   V +G +W IF FIG +E  SHN  +
Sbjct:   58 MVGDVGFDPFGFSSKYDIKWLRESELKHGRVCMLASLGYIVQEFVHLPFEATS--NPVGSEAFYQVPAGGLWQIFAFIGAIEHFSHNFKM 145          
BLAST of mRNA_H-elongata_contig79858.15637.1 vs. uniprot
Match: W7TJ16_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ16_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 7.770e-22
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 MVGDIGFDPFGLAEAFPVKFLREGELKNGRVAMLAVVGWIVSEVVHLPDPRFSAENPVDAMATVGSGPMWLIFFFIGFVEVVSHN 255
            MVGD+GFDP GLAE   +++LRE ELKNGRVAMLA +G++V E + LP   +S  N V A   VG  P+  IF F GF+E   H 
Sbjct:  143 MVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHK 227          
BLAST of mRNA_H-elongata_contig79858.15637.1 vs. uniprot
Match: A0A7S2FU49_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU49_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.830e-21
Identity = 46/80 (57.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    1 MVGDIGFDPFGLAEAFPVKFLREGELKNGRVAMLAVVGWIVSEVVHLPDPRFSAENPVDAMATVGSGPMWLIFFFIGFVE 240
            MVGD+GFDP GLAE F +KFLRE ELK+GRVAMLA+VG I  E  H+P   +   NP+ A A VG      I  F GFVE
Sbjct:   59 MVGDVGFDPLGLAEFFDIKFLREAELKHGRVAMLAIVGIITQEFFHIPGELYQDPNPLTAAAKVGPQVWGQIILFGGFVE 138          
BLAST of mRNA_H-elongata_contig79858.15637.1 vs. uniprot
Match: A0A7S0QK73_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QK73_9CRYP)

HSP 1 Score: 92.4 bits (228), Expect = 3.680e-21
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 MVGDIGFDPFGLAEAFPVKFLREGELKNGRVAMLAVVGWIVSEVVHLPDPRFSAENPVDAMATVGSGPMWLIFFFIGFVEVVSHN 255
            + GD+GFDP G +  F +K+LRE ELK+GRV+ML  +G++V E  HLP P F  +   +A  TV +G +W IFF +G +EV+S++
Sbjct:   68 LAGDVGFDPLGFSNYFDLKWLREAELKHGRVSMLGALGFVVQEKAHLPLPGFDNKLATEAFFTVPAGGLWQIFFTLGAIEVLSNS 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79858.15637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCR7_ECTSI2.950e-3671.76Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A6V1U3D5_HETAK3.020e-2752.94Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S4DC05_HETAK6.190e-2751.76Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A835Z4D2_9STRA1.910e-2655.95Chlorophyll a/b-binding protein domain-containing ... [more]
L1IG04_GUITC1.720e-2248.24Light-harvesting Chl a protein 2 n=2 Tax=Guillardi... [more]
A0A1X6NTR2_PORUM2.430e-2251.14Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
L1IG53_GUITC2.710e-2253.33Light-harvesting Chl a protein 9 n=2 Tax=Guillardi... [more]
W7TJ16_9STRA7.770e-2252.94Light-harvesting protein n=1 Tax=Nannochloropsis g... [more]
A0A7S2FU49_9STRA1.830e-2157.50Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0QK73_9CRYP3.680e-2147.06Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79858contigH-elongata_contig79858:1909..2178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog2880.D8LCR7
Preferred nameLhcr1
KEGG koko:K08907,ko:K08910
KEGG Pathwayko00196,map00196
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2D9V2@1,2S5EH@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931203.6856656-CDS-H-elongata_contig79858:1908..21781622931203.6856656-CDS-H-elongata_contig79858:1908..2178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79858 1909..2178 +
1691679740.2522953-CDS-H-elongata_contig79858:1908..21781691679740.2522953-CDS-H-elongata_contig79858:1908..2178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79858 1909..2178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79858.15637.1prot_H-elongata_contig79858.15637.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79858 1909..2178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79858.15637.1

>prot_H-elongata_contig79858.15637.1 ID=prot_H-elongata_contig79858.15637.1|Name=mRNA_H-elongata_contig79858.15637.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MVGDIGFDPFGLAEAFPVKFLREGELKNGRVAMLAVVGWIVSEVVHLPDP
RFSAENPVDAMATVGSGPMWLIFFFIGFVEVVSHNVSLP*
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mRNA from alignment at H-elongata_contig79858:1909..2178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79858.15637.1 ID=mRNA_H-elongata_contig79858.15637.1|Name=mRNA_H-elongata_contig79858.15637.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig79858:1909..2178+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGGCGATATCGGCTTCGATCCCTTCGGGCTCGCCGAGGCCTTTCC GGTCAAGTTCTTGAGGGAAGGAGAGCTCAAGAACGGCCGTGTGGCAATGC TTGCCGTTGTGGGGTGGATCGTGTCGGAGGTGGTCCATCTTCCAGACCCT AGGTTTAGCGCGGAGAACCCCGTGGACGCTATGGCTACGGTGGGATCGGG CCCCATGTGGCTGATTTTCTTCTTCATCGGGTTCGTGGAGGTGGTTTCCC ACAATGTAAGCCTTCCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig79858:1909..2178+

>mRNA_H-elongata_contig79858.15637.1 ID=mRNA_H-elongata_contig79858.15637.1|Name=mRNA_H-elongata_contig79858.15637.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig79858:1909..2178+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGGCGATATCGGCTTCGATCCCTTCGGGCTCGCCGAGGCCTTTCC
GGTCAAGTTCTTGAGGGAAGGAGAGCTCAAGAACGGCCGTGTGGCAATGC
TTGCCGTTGTGGGGTGGATCGTGTCGGAGGTGGTCCATCTTCCAGACCCT
AGGTTTAGCGCGGAGAACCCCGTGGACGCTATGGCTACGGTGGGATCGGG
CCCCATGTGGCTGATTTTCTTCTTCATCGGGTTCGTGGAGGTGGTTTCCC
ACAATGTAAGCCTTCCGTGAATGGTGGGCGATATCGGCTTCGATCCCTTC
GGGCTCGCCGAGGCCTTTCCGGTCAAGTTCTTGAGGGAAGGAGAGCTCAA
GAACGGCCGTGTGGCAATGCTTGCCGTTGTGGGGTGGATCGTGTCGGAGG
TGGTCCATCTTCCAGACCCTAGGTTTAGCGCGGAGAACCCCGTGGACGCT
ATGGCTACGGTGGGATCGGGCCCCATGTGGCTGATTTTCTTCTTCATCGG
GTTCGTGGAGGTGGTTTCCCACAATGTAAGCCTTCCGTGA
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