mRNA_H-elongata_contig79853.15636.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig79853.15636.1
Unique Name	mRNA_H-elongata_contig79853.15636.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.920e-28
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 1

Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGD 201
            PTKL E+VE FM  + W+LIWTPPYMPS+QPIELFWQHGK YVSFNF+T R M EV  Q+R GWYGD
Sbjct:  494 PTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGD 560

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BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.610e-28
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 1

Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  175 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDK 242

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BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.790e-28
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 1

Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  192 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDK 259

[Close]

BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5JS64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS64_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.900e-28
Identity = 49/68 (72.06%), Postives = 52/68 (76.47%), Query Frame = 1

Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWY DE
Sbjct:  103 PERLEERVVMFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYRDE 170

[Close]

BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 7.000e-28
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 1

Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  217 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDK 284

[Close]

BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.760e-27
Identity = 50/68 (73.53%), Postives = 53/68 (77.94%), Query Frame = 1

Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FMK K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  523 PERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDK 590

[Close]

BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.310e-27
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 1

Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  388 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDK 455

[Close]

BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.350e-27
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 1

Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  489 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDK 556

[Close]

BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.400e-27
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 1

Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  499 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDK 566

[Close]

BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.650e-26
Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = 1

Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS  FE  RKM EV  QIR GWYGD+
Sbjct:  372 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGDK 439

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot

BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LQ25_ECTSI	1.920e-28	73.13	Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
A0A6H5JZ92_9PHAE	3.610e-28	72.06	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KF39_9PHAE	4.790e-28	72.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JS64_9PHAE	4.900e-28	72.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KHE7_9PHAE	7.000e-28	72.06	DDE_3 domain-containing protein n=2 Tax=Ectocarpus...	[more]
D8LNM6_ECTSI	1.760e-27	73.53	DDE_3 domain-containing protein n=3 Tax=Ectocarpus...	[more]
A0A6H5K024_9PHAE	3.310e-27	72.06	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KIM5_9PHAE	4.350e-27	72.06	DDE_3 domain-containing protein n=4 Tax=Ectocarpus...	[more]
A0A6H5JR41_9PHAE	4.400e-27	72.06	DDE_3 domain-containing protein n=5 Tax=Ectocarpus...	[more]
A0A6H5KDX7_9PHAE	1.650e-26	70.59	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig79853	contig	H-elongata_contig79853:2056..2259 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	204
Cds size	204
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931203.606234-CDS-H-elongata_contig79853:2055..2259	1622931203.606234-CDS-H-elongata_contig79853:2055..2259	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig79853 2056..2259 -
1691679740.233423-CDS-H-elongata_contig79853:2055..2259	1691679740.233423-CDS-H-elongata_contig79853:2055..2259	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig79853 2056..2259 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig79853.15636.1	prot_H-elongata_contig79853.15636.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig79853 2056..2259 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig79853:2056..2259-
coding sequence from alignment at H-elongata_contig79853:2056..2259-

protein sequence of mRNA_H-elongata_contig79853.15636.1

>prot_H-elongata_contig79853.15636.1 ID=prot_H-elongata_contig79853.15636.1|Name=mRNA_H-elongata_contig79853.15636.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETG
RKMHEVGDQIRLGWYGDE

mRNA from alignment at H-elongata_contig79853:2056..2259-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig79853.15636.1 ID=mRNA_H-elongata_contig79853.15636.1|Name=mRNA_H-elongata_contig79853.15636.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig79853:2056..2259- (Himanthalia elongata Himel1 dioecious)
CCTACCAAACTCGCTGAGCGGGTAGAGGGGTTCATGAAGAGTAAGGAGTG
GGAGTTGATTTGGACACCCCCGTACATGCCGTCTTACCAGCCGATCGAGC
TGTTTTGGCAGCATGGCAAGGCGTATGTCAGCTTCAATTTTGAGACGGGA
CGGAAGATGCATGAGGTCGGGGATCAGATTCGTCTGGGTTGGTACGGGGA
CGAA

Coding sequence (CDS) from alignment at H-elongata_contig79853:2056..2259-

>mRNA_H-elongata_contig79853.15636.1 ID=mRNA_H-elongata_contig79853.15636.1|Name=mRNA_H-elongata_contig79853.15636.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig79853:2056..2259- (Himanthalia elongata Himel1 dioecious)
CCTACCAAACTCGCTGAGCGGGTAGAGGGGTTCATGAAGAGTAAGGAGTG
GGAGTTGATTTGGACACCCCCGTACATGCCGTCTTACCAGCCGATCGAGC
TGTTTTGGCAGCATGGCAAGGCGTATGTCAGCTTCAATTTTGAGACGGGA
CGGAAGATGCATGAGGTCGGGGATCAGATTCGTCTGGGTTGGTACGGGGA
CGAACCTACCAAACTCGCTGAGCGGGTAGAGGGGTTCATGAAGAGTAAGG
AGTGGGAGTTGATTTGGACACCCCCGTACATGCCGTCTTACCAGCCGATC
GAGCTGTTTTGGCAGCATGGCAAGGCGTATGTCAGCTTCAATTTTGAGAC
GGGACGGAAGATGCATGAGGTCGGGGATCAGATTCGTCTGGGTTGGTACG
GGGACGAA