prot_H-elongata_contig7982.15634.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7982.15634.1
Unique Nameprot_H-elongata_contig7982.15634.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length171
Homology
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: D7G355_ECTSI (TFIIS central domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G355_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 2.320e-80
Identity = 128/170 (75.29%), Postives = 145/170 (85.29%), Query Frame = 0
Query:    1 MPRCVSKRFQRIRVKIVRQRVVAALESSAKLPTDTAEDIEGAIFALSGRFVGKAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVTSSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 170
            +PRCVSKR +  RVK+VR+RV  ALE+SA LP   A+++E AIFAL G  V KAYKAKARE+SFNLR GKNDPLRE + SG+LL   LVRMSS++LAPLSVR ERER ARKRIREVTSSRDSP HTVT+RF C ECGHE+TQYRTWRRKAVVDR+RVI+QCLQCRHSWEL
Sbjct:  268 LPRCVSKRIEEYRVKVVRERVFTALETSATLPASKAKEVEDAIFALCGGSVTKAYKAKAREMSFNLRVGKNDPLRERLLSGSLLPSDLVRMSSNDLAPLSVRRERERFARKRIREVTSSRDSPFHTVTDRFACVECGHEKTQYRTWRRKAVVDRVRVIVQCLQCRHSWEL 437          
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: A0A6H5KU52_9PHAE (TFIIS central domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU52_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.070e-40
Identity = 81/116 (69.83%), Postives = 95/116 (81.90%), Query Frame = 0
Query:    1 MPRCVSKRFQRIRVKIVRQRVVAALESSAKLPTDTAEDIEGAIFALSGRFVGKAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREV 116
            +PRCVSKR ++ RVK+VR+RV  ALE+SA LP   A+++E AIFAL G  V KAYKAKARE+SFNLR GKNDPLRE + SG+LL   LVRMSS++LAPLSVR ERER ARKRIREV
Sbjct:  312 LPRCVSKRIEKYRVKVVRERVFTALETSATLPASKAKEVEDAIFALCGGSVTKAYKAKAREMSFNLRVGKNDPLRERLLSGSLLPSDLVRMSSNDLAPLSVRRERERFARKRIREV 427          
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: A0A8K1FLZ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLZ7_PYTOL)

HSP 1 Score: 115 bits (288), Expect = 2.250e-28
Identity = 73/175 (41.71%), Postives = 101/175 (57.71%), Query Frame = 0
Query:    5 VSKRFQRIRVKIVRQRVVAALESS----AKLPTDTAEDIEGAIFALSGRFVG--KAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVTSSRDSPNH---TVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 170
            VSK +      I R++ +A L  +        T  A++IE A+F   G+     K+Y  KAR+L FNL+  +N  LRE +FSG L +  LVRMS+  +A   +  +RE+  +KR  EVT  RD+  H   T ++ F C  CG  RT YR WRRKA+VDR+RVI+ CL C + WEL
Sbjct:  105 VSKAWSLAMSTIARRKFLARLTDNLTPFTSNATCVAQEIESALFTAYGQMYNLPKSYGQKARQLLFNLKDARNSALRERLFSGELPAAALVRMSASNMANPQLVRQREQWIKKRTHEVT--RDTRAHEGFTQSDMFECRSCGSHRTCYRQWRRKAIVDRVRVIVLCLDCPYRWEL 277          
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: A0A2D4CF48_PYTIN (TFIIS central domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF48_PYTIN)

HSP 1 Score: 107 bits (267), Expect = 2.560e-25
Identity = 61/154 (39.61%), Postives = 90/154 (58.44%), Query Frame = 0
Query:   20 RVVAALESSAKLPTDTAEDIEGAIFALSGR--FVGKAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVTSSRDSPN-HTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 170
            R+  AL   +      A+D+E A+F   G    + K+Y  +AR+L FNL+  +N  LRE +FSG L + VLVRMS+ ++A   +  +R++  +KR  EV     +P+  T T  F C +C    T YR WRRKA+VDR R+I+ C+ CR  WE+
Sbjct:  119 RLTEALTPFSSAANVVAQDVEAALFDAYGHKFSMPKSYGQRARQLLFNLKDTRNSALRERLFSGELSAAVLVRMSATDMANPQLVRQRQQWIKKRTHEVMRDAGTPDGFTPTSLFECRQCSSRSTCYRQWRRKAIVDRTRIIVVCMDCRSRWEV 272          
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: K3WDL3_GLOUD (TFIIS central domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDL3_GLOUD)

HSP 1 Score: 105 bits (263), Expect = 1.300e-24
Identity = 58/138 (42.03%), Postives = 86/138 (62.32%), Query Frame = 0
Query:   36 AEDIEGAIFALSGRFVG--KAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELA-PLSVRLERERIARKRIREVTSSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 170
            A+++EG +F + G+     K+Y  KAR+L FNL+  +N  LR+ + SG L +  LVRMS+ ++A P  VR  +E I ++    +  SR+      T+ F C  CG  RT+YR +RRKA+VDR R+I+ CL C +SWEL
Sbjct:  149 AQEVEGELFEVYGQTFALPKSYGQKARQLLFNLKDTRNAALRDRLLSGELSAHALVRMSAADMANPQLVRQRKEWIKKRTFEVMRDSRELDGFMETDLFECRSCGSSRTRYRQYRRKAIVDRTRIIVLCLMCPYSWEL 286          
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: F0W8D8_9STRA (Uncharacterized protein AlNc14C236G9384 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W8D8_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.160e-24
Identity = 67/173 (38.73%), Postives = 100/173 (57.80%), Query Frame = 0
Query:    5 VSKRFQRIRVKIVRQRVVAALESSAKLPTDTAE----DIEGAIFALSGRF--VGKAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVT-SSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 170
            VSK +        R++  A L+   +   D ++    ++E  +F L      + KAY  KAR+L FNLR  +ND LR+ + SG L +  LVRMS++E+A   +  +R++  +KR  EV  ++ D  + T ++ F C  CG  RT+YR WRRKA+VDR R+II C QC + WEL
Sbjct:  105 VSKAWSLAMTTYSRRKFQACLDKIMRPLADNSDQIAMEVENQLFELYKECFTLPKAYGQKARQLLFNLRDSRNDLLRDRLMSGELSAAALVRMSANEMANPQLVKQRKQWIKKRTYEVMRNAPDLESLTESDMFECRSCGCSRTRYRQWRRKAIVDRTRIIIICTQCPYRWEL 277          
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: A0A024GVT2_9STRA (TFIIS central domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GVT2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.810e-24
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = 0
Query:   53 KAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVT-SSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 170
            KAY  KAR+L FNLR  +ND LR+ + SG L +  LVRMS++E+A   +  +R++  +KR  EV  ++ D    T ++ F C  CG  RT+YR WRRKA+VDR R+II C QC + WEL
Sbjct:  148 KAYGQKARQLLFNLRDSRNDFLRDRLLSGELSASALVRMSANEMANPQLVKQRKQWMKKRTYEVMRNAPDLEGLTESDMFECRSCGCSRTRYRQWRRKAIVDRTRIIIICTQCPYRWEL 266          
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: W2QKW7_PHYPN (TFIIS central domain-containing protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QKW7_PHYPN)

HSP 1 Score: 102 bits (255), Expect = 7.790e-24
Identity = 66/173 (38.15%), Postives = 93/173 (53.76%), Query Frame = 0
Query:    5 VSKRFQRIRVKIVRQRVVAALESSAKLPTDT-----AEDIEGAIFALSGRFVG--KAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVTSSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 170
            V K +    + + R+R  + L    + P DT     A D+E  ++A  G+     KAY  KAR L FNL+  +N  LR  + SG L S  LVRMS+ ++A   +  +R+   +KR  EV           ++ F C  CG  RT+YR WRRKAVVDR R+I+ CL+C + WEL
Sbjct:   69 VCKSWSLASIAVARRRFSSRLADILR-PLDTNALAVALDVEAELYAAYGQSYSLTKAYAHKARTLLFNLKDSRNVDLRNRLLSGELPSHSLVRMSAPDMANPQLARQRKEWIKKRTHEVMRDGREAEGFESDLFECRNCGSSRTRYRQWRRKAVVDRTRIIVICLRCPYRWEL 240          
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: A0A329RSA8_9STRA (TFIIS central domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A329RSA8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.330e-23
Identity = 58/135 (42.96%), Postives = 77/135 (57.04%), Query Frame = 0
Query:   38 DIEGAIFALSGRFVG--KAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVTSSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 170
            D+E  ++A  G+     KAY  KAR L FNL+  +N  LR  + SG L S  LVRMS  ++A   +  +R+   RKR  EV           ++ F C  CG  RT+YR WRRKAVVDR R+I+ CL+C + WEL
Sbjct:  126 DVEAELYAAYGQSYSLTKAYAHKARALLFNLKDSRNVDLRNRLLSGELPSHSLVRMSGPDMANPQLARQRKEWIRKRTHEVMRDGREAEGFESDLFECRNCGSSRTRYRQWRRKAVVDRTRIIVICLRCPYRWEL 260          
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Match: A0A6A4CXU8_9STRA (TFIIS central domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CXU8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.670e-23
Identity = 67/173 (38.73%), Postives = 92/173 (53.18%), Query Frame = 0
Query:    5 VSKRFQRIRVKIVRQRVVAALESSAKLPTD-----TAEDIEGAIFALSGRFVG--KAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLSVRLERERIARKRIREVTSSRDSPNHTVTERFTCPECGHERTQYRTWRRKAVVDRIRVIIQCLQCRHSWEL 170
            V K +    V + R+R  + L    + P D      A D+E  ++A  G+     KAY  KAR L FNL+  +N  LR  + SG L S  LVRMS  ++A   +  +R+   RKR  EV       +   ++ F C  CG  RT+YR WRRKAVVDR R+I+ CL+C + WEL
Sbjct:   90 VCKSWSLASVSVARRRFSSRLTEILR-PLDPNAVAVALDVEAELYAAYGQSYSLTKAYAHKARTLLFNLKDSRNVDLRNRLVSGELPSHSLVRMSGPDMANPQLVRQRKEWIRKRTHEVMRDGREVDGFESDLFECRNCGSSRTRYRQWRRKAVVDRTRIIVICLRCPYRWEL 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7982.15634.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G355_ECTSI2.320e-8075.29TFIIS central domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KU52_9PHAE2.070e-4069.83TFIIS central domain-containing protein n=1 Tax=Ec... [more]
A0A8K1FLZ7_PYTOL2.250e-2841.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CF48_PYTIN2.560e-2539.61TFIIS central domain-containing protein n=1 Tax=Py... [more]
K3WDL3_GLOUD1.300e-2442.03TFIIS central domain-containing protein n=1 Tax=Gl... [more]
F0W8D8_9STRA2.160e-2438.73Uncharacterized protein AlNc14C236G9384 n=1 Tax=Al... [more]
A0A024GVT2_9STRA4.810e-2447.90TFIIS central domain-containing protein n=1 Tax=Al... [more]
W2QKW7_PHYPN7.790e-2438.15TFIIS central domain-containing protein n=8 Tax=Ph... [more]
A0A329RSA8_9STRA2.330e-2342.96TFIIS central domain-containing protein n=10 Tax=P... [more]
A0A6A4CXU8_9STRA4.670e-2338.73TFIIS central domain-containing protein n=5 Tax=Ph... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003618Transcription elongation factor S-II, central domainSMARTSM00510mid_6coord: 10..107
e-value: 0.0069
score: 15.3
IPR003618Transcription elongation factor S-II, central domainPFAMPF07500TFIIS_Mcoord: 29..115
e-value: 3.1E-16
score: 59.9
IPR003618Transcription elongation factor S-II, central domainPROSITEPS51321TFIIS_CENTRALcoord: 12..124
score: 16.725
IPR036575Transcription elongation factor S-II, central domain superfamilyGENE3D1.10.472.30coord: 3..98
e-value: 4.6E-13
score: 51.5
IPR036575Transcription elongation factor S-II, central domain superfamilySUPERFAMILY46942Elongation factor TFIIS domain 2coord: 24..98
NoneNo IPR availableGENE3D2.20.25.10coord: 99..170
e-value: 4.9E-7
score: 31.5
NoneNo IPR availablePANTHERPTHR11477TRANSCRIPTION ELONGATION FACTOR S-IIcoord: 11..145
NoneNo IPR availablePANTHERPTHR11477:SF0TRANSCRIPTION ELONGATION FACTOR S-IIcoord: 11..145
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 118..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7982contigH-elongata_contig7982:4659..9014 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7982.15634.1mRNA_H-elongata_contig7982.15634.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7982 2772..9954 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7982.15634.1 ID=prot_H-elongata_contig7982.15634.1|Name=mRNA_H-elongata_contig7982.15634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
MPRCVSKRFQRIRVKIVRQRVVAALESSAKLPTDTAEDIEGAIFALSGRF
VGKAYKAKARELSFNLRAGKNDPLREAVFSGALLSWVLVRMSSDELAPLS
VRLERERIARKRIREVTSSRDSPNHTVTERFTCPECGHERTQYRTWRRKA
VVDRIRVIIQCLQCRHSWEL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003618TFIIS_cen_dom
IPR036575TFIIS_cen_dom_sf