mRNA_H-elongata_contig79813.15633.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79813.15633.1
Unique NamemRNA_H-elongata_contig79813.15633.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79813.15633.1 vs. uniprot
Match: D7FZF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF6_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.550e-36
Identity = 78/115 (67.83%), Postives = 91/115 (79.13%), Query Frame = 1 
Query:    1 KRSLEEELHVLLPVLLAHAPRIKMREATGALLRTRFAPSLLHVSVKNDPLSLESIVLGVCDAVTPVGNSVPPLRPPRTPNRIKAKPNRVTERAEELVMRLCSLGAMASIKIRSVL 345
            +RSLEEELH+LLPVLLAHAPR++MRE++ ALLRTRFAPSLLHVS  NDPLSLESIVLGVCDAV     + P +   RT +R       V+ RAEELVMRLC LGA+AS+K+R VL
Sbjct:  333 QRSLEEELHMLLPVLLAHAPRVRMRESSAALLRTRFAPSLLHVSAMNDPLSLESIVLGVCDAVA----ATPGITATRTSHR-------VSRRAEELVMRLCGLGAIASVKVRQVL 436
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BLAST of mRNA_H-elongata_contig79813.15633.1 vs. uniprot
Match: A0A6H5K9Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.160e-5
Identity = 33/64 (51.56%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:  157 ESIVLGVCDAVTPVGNSVPPLRPPRTPNRIKAKPNRVTERAEELVMRLCSLGAMASIKIRSVLV 348
            + IVLGVCDAVT        L             + V+ RAEELVMRLC LGAMAS+K+R VLV
Sbjct:  105 QRIVLGVCDAVTVTPGITATLTS-----------HNVSRRAEELVMRLCGLGAMASVKVRGVLV 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79813.15633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZF6_ECTSI1.550e-3667.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9Q4_9PHAE1.160e-551.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79813contigH-elongata_contig79813:51..931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIntegrator complex subunit 2
Ec32 orthologEc-19_003130.1
Exons2
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931203.0492215-CDS-H-elongata_contig79813:50..2111622931203.0492215-CDS-H-elongata_contig79813:50..211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79813 51..211 +
1691679739.938081-CDS-H-elongata_contig79813:50..2111691679739.938081-CDS-H-elongata_contig79813:50..211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79813 51..211 +
1622931203.0678587-CDS-H-elongata_contig79813:735..9311622931203.0678587-CDS-H-elongata_contig79813:735..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79813 736..931 +
1691679739.9510393-CDS-H-elongata_contig79813:735..9311691679739.9510393-CDS-H-elongata_contig79813:735..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79813 736..931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79813.15633.1prot_H-elongata_contig79813.15633.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79813 51..931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79813.15633.1

>prot_H-elongata_contig79813.15633.1 ID=prot_H-elongata_contig79813.15633.1|Name=mRNA_H-elongata_contig79813.15633.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
KRSLEEELHVLLPVLLAHAPRIKMREATGALLRTRFAPSLLHVSVKNDPL
SLESIVLGVCDAVTPVGNSVPPLRPPRTPNRIKAKPNRVTERAEELVMRL
CSLGAMASIKIRSVLVSV*
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mRNA from alignment at H-elongata_contig79813:51..931+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79813.15633.1 ID=mRNA_H-elongata_contig79813.15633.1|Name=mRNA_H-elongata_contig79813.15633.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=881bp|location=Sequence derived from alignment at H-elongata_contig79813:51..931+ (Himanthalia elongata Himel1 dioecious)
AAAAGATCTCTGGAGGAAGAGTTACACGTGCTCCTGCCAGTGCTCCTGGC
CCACGCCCCTCGCATCAAGATGAGGGAGGCTACGGGCGCGCTGCTGAGGA
CGCGGTTTGCCCCGTCATTGCTGCACGTGTCCGTGAAGAACGACCCCCTC
AGCCTCGAAAGGTGGGGAACGCCGCCAAGCTGCGTACTAATTTTAATGAG
ACTTTGTTTCGGTGTTTTGATGTGTTTTGGGAGAGTGGTGTGGCTATCGC
TTGTTTTGACATACTTTTTTCTTGAAAAAAAACATCCACACCTTCTTAGC
ACCGGGAGTTTGTTTTTTGTTTTTTCACTAATATTGTCAAGTAAAATAAA
ATGAACTTTTGCGTTACTTTGGTTTTCATTTTTTTATATTACAGCCTTTT
TCGTCATTCCTTTCCCGTATTTCCCCCGATATTTGCTATAATCCTTTTCG
AAAAAAATAAATAATAATAAAATGTTCCTTTCATTATCGTTTTTTTCATT
GTGTTGCTTGATATATTTATTTATTTTCTCTCTTTGTTTTATATGAAAGC
CACGAAAAATGGTTTTGCAGGCCCTTCACTTTTTGGCTTCGCGAGAGAGC
TGCATATTTCCGCTCGACTCCCTCCTCCCATTCCCCTGAAGCCTTCGCAT
TCTTTGCGTTTCTGTCTCTACCACTCTCTCCGTAGCATCGTGCTAGGAGT
GTGCGACGCTGTGACACCTGTGGGAAACTCGGTGCCGCCGTTGCGGCCGC
CGCGCACCCCAAACCGCATCAAGGCGAAGCCGAACCGCGTCACGGAACGG
GCGGAGGAGCTCGTCATGCGTCTGTGCTCGCTGGGGGCAATGGCCAGCAT
AAAGATTCGCTCGGTCTTGGTGAGTGTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig79813:51..931+

>mRNA_H-elongata_contig79813.15633.1 ID=mRNA_H-elongata_contig79813.15633.1|Name=mRNA_H-elongata_contig79813.15633.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig79813:51..931+ (Himanthalia elongata Himel1 dioecious)
AAAAGATCTCTGGAGGAAGAGTTACACGTGCTCCTGCCAGTGCTCCTGGC
CCACGCCCCTCGCATCAAGATGAGGGAGGCTACGGGCGCGCTGCTGAGGA
CGCGGTTTGCCCCGTCATTGCTGCACGTGTCCGTGAAGAACGACCCCCTC
AGCCTCGAAAGAAAAGATCTCTGGAGGAAGAGTTACACGTGCTCCTGCCA
GTGCTCCTGGCCCACGCCCCTCGCATCAAGATGAGGGAGGCTACGGGCGC
GCTGCTGAGGACGCGGTTTGCCCCGTCATTGCTGCACGTGTCCGTGAAGA
ACGACCCCCTCAGCCTCGAAAGCATCGTGCTAGGAGTGTGCGACGCTGTG
ACACCTGTGGGAAACTCGGTGCCGCCGTTGCGGCCGCCGCGCACCCCAAA
CCGCATCAAGGCGAAGCCGAACCGCGTCACGGAACGGGCGGAGGAGCTCG
TCATGCGTCTGTGCTCGCTGGGGGCAATGGCCAGCATAAAGATTCGCTCG
GTCTTGGTGAGTGTCTAGCATCGTGCTAGGAGTGTGCGACGCTGTGACAC
CTGTGGGAAACTCGGTGCCGCCGTTGCGGCCGCCGCGCACCCCAAACCGC
ATCAAGGCGAAGCCGAACCGCGTCACGGAACGGGCGGAGGAGCTCGTCAT
GCGTCTGTGCTCGCTGGGGGCAATGGCCAGCATAAAGATTCGCTCGGTCT
TGGTGAGTGTCTAG
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