mRNA_H-elongata_contig79761.15628.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79761.15628.1
Unique NamemRNA_H-elongata_contig79761.15628.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79761.15628.1 vs. uniprot
Match: D8LIM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIM4_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 6.820e-36
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 GNMRQDILSGRLKRGYNPVYYNDSVAVGTIASERNTIDTCIFWMEQEKLRQEGKPHVYVDENGEV 195
            GNMR  +LSGRLKRGYNPVY+NDSVAVGT+ASERNTIDTCIFWMEQEKLRQ+GKPHVYVD  GEV
Sbjct:   50 GNMRHKVLSGRLKRGYNPVYWNDSVAVGTVASERNTIDTCIFWMEQEKLRQQGKPHVYVDAQGEV 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79761.15628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIM4_ECTSI6.820e-3687.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79761contigH-elongata_contig79761:23..220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_004400.1
Exons1
Model size198
Cds size192
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931202.5141594-UTR-H-elongata_contig79761:22..281622931202.5141594-UTR-H-elongata_contig79761:22..28Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79761 23..28 +
1691679739.744232-UTR-H-elongata_contig79761:22..281691679739.744232-UTR-H-elongata_contig79761:22..28Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79761 23..28 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931202.5279405-CDS-H-elongata_contig79761:28..2201622931202.5279405-CDS-H-elongata_contig79761:28..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79761 29..220 +
1691679739.7549274-CDS-H-elongata_contig79761:28..2201691679739.7549274-CDS-H-elongata_contig79761:28..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79761 29..220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79761.15628.1prot_H-elongata_contig79761.15628.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79761 29..220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79761.15628.1

>prot_H-elongata_contig79761.15628.1 ID=prot_H-elongata_contig79761.15628.1|Name=mRNA_H-elongata_contig79761.15628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MRQDILSGRLKRGYNPVYYNDSVAVGTIASERNTIDTCIFWMEQEKLRQE
GKPHVYVDENGEV*
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mRNA from alignment at H-elongata_contig79761:23..220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79761.15628.1 ID=mRNA_H-elongata_contig79761.15628.1|Name=mRNA_H-elongata_contig79761.15628.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig79761:23..220+ (Himanthalia elongata Himel1 dioecious)
GGCAACATGCGACAGGACATCCTGTCCGGGAGGCTGAAGCGAGGCTATAA
CCCCGTGTACTACAACGACAGCGTGGCCGTGGGCACCATCGCTTCCGAGC
GAAACACCATCGACACTTGCATCTTCTGGATGGAGCAAGAGAAGCTTAGG
CAAGAGGGCAAGCCGCACGTGTACGTCGACGAGAACGGGGAGGTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig79761:23..220+

>mRNA_H-elongata_contig79761.15628.1 ID=mRNA_H-elongata_contig79761.15628.1|Name=mRNA_H-elongata_contig79761.15628.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig79761:23..220+ (Himanthalia elongata Himel1 dioecious)
ATGCGACAGGACATCCTGTCCGGGAGGCTGAAGCGAGGCTATAACCCCGT
GTACTACAACGACAGCGTGGCCGTGGGCACCATCGCTTCCGAGCGAAACA
CCATCGACACTTGCATCTTCTGGATGGAGCAAGAGAAGCTTAGGCAAGAG
GGCAAGCCGCACGTGTACGTCGACGAGAACGGGGAGGTCTGAATGCGACA
GGACATCCTGTCCGGGAGGCTGAAGCGAGGCTATAACCCCGTGTACTACA
ACGACAGCGTGGCCGTGGGCACCATCGCTTCCGAGCGAAACACCATCGAC
ACTTGCATCTTCTGGATGGAGCAAGAGAAGCTTAGGCAAGAGGGCAAGCC
GCACGTGTACGTCGACGAGAACGGGGAGGTCTGA
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