mRNA_H-elongata_contig79738.15627.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79738.15627.1
Unique NamemRNA_H-elongata_contig79738.15627.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79738.15627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79738contigH-elongata_contig79738:1417..2163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size566
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79738.15627.1prot_H-elongata_contig79738.15627.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79738 1538..2084 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931202.432861-UTR-H-elongata_contig79738:1416..15371622931202.432861-UTR-H-elongata_contig79738:1416..1537Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79738 1417..1537 +
1691679739.6858208-UTR-H-elongata_contig79738:1416..15371691679739.6858208-UTR-H-elongata_contig79738:1416..1537Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79738 1417..1537 +
1622931202.4788985-UTR-H-elongata_contig79738:2084..21631622931202.4788985-UTR-H-elongata_contig79738:2084..2163Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79738 2085..2163 +
1691679739.7321045-UTR-H-elongata_contig79738:2084..21631691679739.7321045-UTR-H-elongata_contig79738:2084..2163Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79738 2085..2163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931202.4475944-CDS-H-elongata_contig79738:1537..16801622931202.4475944-CDS-H-elongata_contig79738:1537..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79738 1538..1680 +
1691679739.7008023-CDS-H-elongata_contig79738:1537..16801691679739.7008023-CDS-H-elongata_contig79738:1537..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79738 1538..1680 +
1622931202.4660735-CDS-H-elongata_contig79738:1861..20841622931202.4660735-CDS-H-elongata_contig79738:1861..2084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79738 1862..2084 +
1691679739.7189443-CDS-H-elongata_contig79738:1861..20841691679739.7189443-CDS-H-elongata_contig79738:1861..2084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79738 1862..2084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79738.15627.1

>prot_H-elongata_contig79738.15627.1 ID=prot_H-elongata_contig79738.15627.1|Name=mRNA_H-elongata_contig79738.15627.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MTRPKHGYSNQSTYGVADNTNRDQCAKHALGGVANVKRKMCSSDSCSKWS
MFRRKCVLVMGVLSLRASARPGAQKESYALSMLWKGWSMFRRKMLLVIGV
LSLRAPARPEARKESTALAML*
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mRNA from alignment at H-elongata_contig79738:1417..2163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79738.15627.1 ID=mRNA_H-elongata_contig79738.15627.1|Name=mRNA_H-elongata_contig79738.15627.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at H-elongata_contig79738:1417..2163+ (Himanthalia elongata Himel1 dioecious)
AGGTCGACTTTTGCCTGAAGATGCACAAGCGGTGGGTACTGTAAGGTATC
AAGCTGCTCAATAACTTACTGTGGAAAGTGCAAGTGCTGCGCGAGTATTT
CGTGCAGGGAAATTGTCAGATATGACGCGTCCGAAACATGGTTACTCTAA
TCAATCGACGTACGGGGTGGCCGACAACACGAACCGAGATCAATGCGCCA
AGCATGCGTTAGGGGGTGTGGCAAACGTCAAGAGGAAAATGTGTTCCAGC
GATAGCTGCTCTAAAATGCCAAGCTACGGAAAGGCTGGAAGCTCAAAACA
GGAGTACTGCTCTGAGCATGCATTGGAGGCGGTGGTCAATGTTTCGAACG
AAATATATGCCGGTGATGGGTTTTCTAACCTAGCGAGCTACGGGAAGGCT
GGCAGCATGAAGCGAGAGAACTTCGCTGAGCATGCCTTGGAAGGGATGGT
CAATGTTTCGAAGAAAGTGTGTGCTGGTTATGGGTGTTCTAAGCTTGCGA
GCTTCGGCAAGGCCGGGAGCACAAAAAGAGAGTTATGCGCTGAGCATGCT
TTGGAAGGGATGGTCAATGTTTCGAAGAAAAATGCTGCTGGTTATAGGTG
TTCTAAGCTTGCGAGCTCCGGCAAGGCCGGAAGCACGAAAAGAGAGTACT
GCGCTGGCAATGCTTTGAAGGGAATGGTCAATGTTTCGAAGAAAAAGTGT
AATGGCGATTTGTGTGTTAATATTACTAACTACGGGAAGGACGGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig79738:1417..2163+

>mRNA_H-elongata_contig79738.15627.1 ID=mRNA_H-elongata_contig79738.15627.1|Name=mRNA_H-elongata_contig79738.15627.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig79738:1417..2163+ (Himanthalia elongata Himel1 dioecious)
ATGACGCGTCCGAAACATGGTTACTCTAATCAATCGACGTACGGGGTGGC
CGACAACACGAACCGAGATCAATGCGCCAAGCATGCGTTAGGGGGTGTGG
CAAACGTCAAGAGGAAAATGTGTTCCAGCGATAGCTGCTCTAAATGACGC
GTCCGAAACATGGTTACTCTAATCAATCGACGTACGGGGTGGCCGACAAC
ACGAACCGAGATCAATGCGCCAAGCATGCGTTAGGGGGTGTGGCAAACGT
CAAGAGGAAAATGTGTTCCAGCGATAGCTGCTCTAAATGGTCAATGTTTC
GAAGAAAGTGTGTGCTGGTTATGGGTGTTCTAAGCTTGCGAGCTTCGGCA
AGGCCGGGAGCACAAAAAGAGAGTTATGCGCTGAGCATGCTTTGGAAGGG
ATGGTCAATGTTTCGAAGAAAAATGCTGCTGGTTATAGGTGTTCTAAGCT
TGCGAGCTCCGGCAAGGCCGGAAGCACGAAAAGAGAGTACTGCGCTGGCA
ATGCTTTGAATGGTCAATGTTTCGAAGAAAGTGTGTGCTGGTTATGGGTG
TTCTAAGCTTGCGAGCTTCGGCAAGGCCGGGAGCACAAAAAGAGAGTTAT
GCGCTGAGCATGCTTTGGAAGGGATGGTCAATGTTTCGAAGAAAAATGCT
GCTGGTTATAGGTGTTCTAAGCTTGCGAGCTCCGGCAAGGCCGGAAGCAC
GAAAAGAGAGTACTGCGCTGGCAATGCTTTGA
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