prot_H-elongata_contig12024.1562.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig12024.1562.1
Unique Name	prot_H-elongata_contig12024.1562.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	124

Homology

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BLAST of mRNA_H-elongata_contig12024.1562.1 vs. uniprot
Match: A0A6H5L5F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F6_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 5.170e-41
Identity = 75/126 (59.52%), Postives = 90/126 (71.43%), Query Frame = 0

Query:    7 STMIPPDISGPSVVSRRPISIGQAGS---------TQRSLVAEDPESERIPARIACAAFSLFALGLILLCMSVNFFSKGHPGSLAFLLLGIVVLIPGAYSSFQLLAAFRRWPGYDLEDLQARGDFV 123
            STM  P+I+      R P  +  AG+          QRSLV + P+SERIPAR  CAAFSL  LGLILLC+S NFF+  HPGS+AFL+LGIVV+IPGA+SSFQL AAFRRWPGYD +D++  GDFV
Sbjct:    3 STMRSPEIT------RSPARVADAGAGERNLQSIGRQRSLVEDHPDSERIPARTVCAAFSLLVLGLILLCVSANFFAMKHPGSVAFLVLGIVVIIPGAHSSFQLFAAFRRWPGYDFDDMRGSGDFV 122

[Close]

BLAST of mRNA_H-elongata_contig12024.1562.1 vs. uniprot
Match: A0A7S2V4Y8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4Y8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.230e-16
Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = 0

Query:   25 ISIGQAGSTQRSLVAEDPESE----------RIPARIACAAFSLFALGLILLCMSVNFFSKGHPGSLAFLLLGIVVLIPGAYSSFQLLAAFRRWPGYDL 113
            I++G  GS  R     D  S            +P R   AA SL  LGLIL+  S++F + GH GS+ F +LG++V+IPG YS+ QL+ A RRWPGY L
Sbjct:   56 INLGPGGSESRPAGQPDIYSRYNDGGGRQRVHLPVRTCMAAVSLLVLGLILIITSIDFVATGHKGSMPFFILGLIVIIPGLYSTVQLVGAIRRWPGYSL 154

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig12024.1562.1 vs. uniprot

BLAST of mRNA_H-elongata_contig12024.1562.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L5F6_9PHAE	5.170e-41	59.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S2V4Y8_9STRA	1.230e-16	43.43	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008590	Protein of unknown function DUF872, transmembrane	PFAM	PF05915	DUF872	coord: 34..116 e-value: 5.6E-10 score: 39.4
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 79..99
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 74..78
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..50
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 100..123
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 51..73
None	No IPR available	TMHMM	TMhelix		coord: 83..105
None	No IPR available	TMHMM	TMhelix		coord: 51..73

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig12024	contig	H-elongata_contig12024:1404..3330 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig12024.1562.1	mRNA_H-elongata_contig12024.1562.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig12024 167..3348 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig12024.1562.1 ID=prot_H-elongata_contig12024.1562.1|Name=mRNA_H-elongata_contig12024.1562.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MLLRKMSTMIPPDISGPSVVSRRPISIGQAGSTQRSLVAEDPESERIPAR
IACAAFSLFALGLILLCMSVNFFSKGHPGSLAFLLLGIVVLIPGAYSSFQ
LLAAFRRWPGYDLEDLQARGDFV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008590	DUF872_TM