mRNA_H-elongata_contig12024.1562.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12024.1562.1
Unique NamemRNA_H-elongata_contig12024.1562.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12024.1562.1 vs. uniprot
Match: A0A6H5L5F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F6_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.330e-36
Identity = 75/126 (59.52%), Postives = 90/126 (71.43%), Query Frame = 1 
Query:   37 STMIPPDISGPSVVSRRPISIGQAGS---------TQRSLVAEDPESERIPARIACAAFSLFALGLILLCMSVNFFSKGHPGSLAFLLLGIVVLIPGAYSSFQLLAAFRRWPGYDLEDLQARGDFV 387
            STM  P+I+      R P  +  AG+          QRSLV + P+SERIPAR  CAAFSL  LGLILLC+S NFF+  HPGS+AFL+LGIVV+IPGA+SSFQL AAFRRWPGYD +D++  GDFV
Sbjct:    3 STMRSPEIT------RSPARVADAGAGERNLQSIGRQRSLVEDHPDSERIPARTVCAAFSLLVLGLILLCVSANFFAMKHPGSVAFLVLGIVVIIPGAHSSFQLFAAFRRWPGYDFDDMRGSGDFV 122
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BLAST of mRNA_H-elongata_contig12024.1562.1 vs. uniprot
Match: A0A7S2V4Y8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4Y8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.960e-14
Identity = 43/104 (41.35%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:   91 ISIGQAGSTQRSLVAEDPESE----------RIPARIACAAFSLFALGLILLCMSVNFFSKGHPGSLAFLLLGIVVLIPGAYSSFQLLAAFRRWPGYDLEDLQA 372
            I++G  GS  R     D  S            +P R   AA SL  LGLIL+  S++F + GH GS+ F +LG++V+IPG YS+ QL+ A RRWPGY L  + +
Sbjct:   56 INLGPGGSESRPAGQPDIYSRYNDGGGRQRVHLPVRTCMAAVSLLVLGLILIITSIDFVATGHKGSMPFFILGLIVIIPGLYSTVQLVGAIRRWPGYSLNYMSS 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12024.1562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5F6_9PHAE1.330e-3659.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V4Y8_9STRA2.960e-1441.35Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12024contigH-elongata_contig12024:167..3348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue3.7e-10
Seed eggNOG ortholog36331.EPrPI00000020092
EggNOG free text desc.Transmembrane protein. Source PGD
EggNOG OGs1MHQV@121069,2CXP8@1,2S4M2@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionProtein of unknown function DUF872, transmembrane
Ec32 orthologEc-00_006650.1
Exons3
Model size1627
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12024.1562.1prot_H-elongata_contig12024.1562.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12024 1404..3330 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929705.0356336-UTR-H-elongata_contig12024:166..14031622929705.0356336-UTR-H-elongata_contig12024:166..1403Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12024 167..1403 -
1691679125.7237415-UTR-H-elongata_contig12024:166..14031691679125.7237415-UTR-H-elongata_contig12024:166..1403Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12024 167..1403 -
1622929705.1110764-UTR-H-elongata_contig12024:3330..33481622929705.1110764-UTR-H-elongata_contig12024:3330..3348Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12024 3331..3348 -
1691679125.7634487-UTR-H-elongata_contig12024:3330..33481691679125.7634487-UTR-H-elongata_contig12024:3330..3348Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12024 3331..3348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929705.0686224-CDS-H-elongata_contig12024:1403..15071622929705.0686224-CDS-H-elongata_contig12024:1403..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12024 1404..1507 -
1691679125.7327108-CDS-H-elongata_contig12024:1403..15071691679125.7327108-CDS-H-elongata_contig12024:1403..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12024 1404..1507 -
1622929705.0837958-CDS-H-elongata_contig12024:2054..21331622929705.0837958-CDS-H-elongata_contig12024:2054..2133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12024 2055..2133 -
1691679125.7397792-CDS-H-elongata_contig12024:2054..21331691679125.7397792-CDS-H-elongata_contig12024:2054..2133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12024 2055..2133 -
1622929705.0959-CDS-H-elongata_contig12024:3141..33301622929705.0959-CDS-H-elongata_contig12024:3141..3330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12024 3142..3330 -
1691679125.7539656-CDS-H-elongata_contig12024:3141..33301691679125.7539656-CDS-H-elongata_contig12024:3141..3330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12024 3142..3330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12024.1562.1

>prot_H-elongata_contig12024.1562.1 ID=prot_H-elongata_contig12024.1562.1|Name=mRNA_H-elongata_contig12024.1562.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MLLRKMSTMIPPDISGPSVVSRRPISIGQAGSTQRSLVAEDPESERIPAR
IACAAFSLFALGLILLCMSVNFFSKGHPGSLAFLLLGIVVLIPGAYSSFQ
LLAAFRRWPGYDLEDLQARGDFV*
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mRNA from alignment at H-elongata_contig12024:167..3348-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12024.1562.1 ID=mRNA_H-elongata_contig12024.1562.1|Name=mRNA_H-elongata_contig12024.1562.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3182bp|location=Sequence derived from alignment at H-elongata_contig12024:167..3348- (Himanthalia elongata Himel1 dioecious)
CGGCGCTGATCACCGTGTATGCTTCTGCGAAAGATGTCCACGATGATACC
ACCTGATATATCTGGGCCGAGTGTAGTGTCCAGGCGACCTATATCTATTG
GTCAAGCAGGCAGTACCCAGCGTTCCCTCGTGGCGGAGGACCCGGAATCG
GAGAGGATCCCTGCCAGGATCGCCTGCGCTGCGTTCTCACTGTTTGCGCT
TGGACTGGTGAGAAGATTACGGCCATGCATTTTTTCCATTTCGGTATTGA
TAAAGTAGTGTTAGCCTTAACCTTTTCTGGAGCTCGCTGTATTTCGCCGT
GTTCAGAGGTGCGGGTATATGATGATTACGATATTGAAGAACAAATAATA
CCATTACAAGGCCATAACCCCCCCGCCGCGCCGCCCAACTGACAGCAACG
TCGAAATCGCGCCTGCTCAGCGGGATTCTGTCAAACAATATGATGACCCG
GTGCGTCAACTAGGTTGTTTCTAGCTTGGCGGGAGAGGCTTGTGTGGTTC
TCGACAAATGTTGTATGTCGAAAGACTCGTGTTCATTAGGTAGTGCTCGA
GAGGAGCCTCGGCATAAAATGCTTTCATAATAAAGTCATACGCGTTTTCC
TTCGTTAGATATCCCGGTGGATGTGGCCCAGCTTCGAGTGAAGCACTGCC
TGTGTTTCTGTACCAGTATAACTCTGAAGCTGTCTCGTGAGAGCTCCACG
CCTTTCCGTTGCGTTCGCGATAAAATCACTCCTCGTTTACAATCGACAAA
TCAGGACGGAACGCTCGCAGAAAAAGCTGAGGCATGCCCATCGAGTGTAT
CACACTCCACTACGAAAACAGCAGCAGCCGTGGGAGTTGTTTTCCCTTCG
TGTGATCTCATTGCTTAACTTTATGCTTCGCGCGTCCACCAGAAGGTGTT
TGGCGTCACCTCTTCACCTTTCCGATATCGCCGCAGCACCGTGGGAAGGG
CTCCCGGCTTCTCAAAATTCCTCCGCCATTGCCGAGACGCATCAGCAGAA
CATGTTGCCGCGGTGAAAGCAACCCCTCCTTCCGTTCGAAACCCTAGCTT
GAGCGCTCAGGCTTTTCACGTATACAGACATCGTTTTTGAGGCTACCAGT
GAACCGAGAGTCCCTCTCAATATATTACGAAAGCATTCGATGTTGGGCTT
TGCTGAGAATCGTGACCGTCCCGCACGCCCCTGTCCCCACACCCTCGTCT
CTCCGCGTTAACCAGATCTTGCTGTGCATGAGCGTAAATTTCTTCTCCAA
AGGACACCCCGGGTCGCTAGCCTTCTTGCTCTTGGGAATCGTTGGTGGGT
TCCGATTACCTGGTGGTGACTACAACTTTGCGTCGAACGACCAGTCAAGT
TCACACCACCCCGCATGATAAAGCAACTTGTTGCGCGGCTTGCTGCTCGA
TCGCTTTTTATTGTTTGTGTCGGCAAGGGTTTCTAGAGAGAGAGAGAGAG
ATGTGCAGTGCATTGGAAACTCAGCTACGGAGTAACTAGACAACTCCACT
CTTCATTACTTGCGCTGAATATGCACTCACACACACACGCGCGCGCGCGC
GCAAAACACCGCTGAAGCGCTTGAGCAGTGGTTGATAGAGAGAACGCGTG
TCCGACCTCGTCTCTTGCGGGCGCCATGTAGTTGGACAGTATCCTTTCAA
CGGACGAGGGTACTCGTTTTTGTGGACACGCGGTAATCGCCGTACTAGAG
GAAAAACGCCTCCCTTATGCGTTTTGGGGGGAAAGAGGACTGCATGTTTG
ATGTTGTTAAGCCCACGCCCTCGTTGTTCTCGCGCGAAAAGAGGCTGCTG
CGTAATTAATTTATTCCCTATCGTGTGGCACGCGCCGGCAGTTCTAATAC
CAGGAGCCTACAGCAGCTTCCAGCTACTGGCTGCGTTCCGCCGATGGCCC
GGTTACGACTTGGAAGATTTGCAGGCTCGAGGAGACTTTGTATAAAAACG
CCCCAGATGGTCGGGAGGCCCGCTCTCGACCGGACGGAGTGGGGTGGAGT
GGCGTGTTTTATCCGTGTCACGCGTACGAGTTAATGATTTTGCGCGTCAC
GTTGTTCAGCGTGCTTTTCTCTCCCGAGGCTTGTCCAAGCGCGCTCGTTT
GAAATACTGATGTTAAACGTATACAGCATCTTCACGGCGCGACCACGGAA
CGGGTTACGGATCAGGCCGGCCGATGCTGCTCACTGCAGCAGTTGATTGC
TACAGGCGCGCGGCGTGGGAATGTTCGAAGGCGGGAAGGGTTACCAGGGA
GTTGGAAGGCGAAAATGTTACGGGGGGGTAGGTGAAATGAGAGGTCCTTG
GTCAGGGCCCACACGTTGGGCGATACTAGAACAAGCAGACGACATTGCAG
TACTACTGCATCGCTCGTAGCCGTGGGTATGTTTGTCGTGCGTAGCGAAC
GTTCGAGGAAATTTCCTGGAAGTTTCCTGGAACTTCCCAAGCCTCCATGT
GCTTCCTGCTCTCACTCCTGTAGTTTACATTTGACTGATACCTTGTGTGT
TTGTGTGTGTATATTTATGTTGGTGTCTTGGTGTGACTTAAATGTGTCTT
CATATGGGTAACTCTGTGTTGTGTGAGTATGAGTTTTTCATATTCCTGCT
CGTTGCGTTCGCGTGTGTGTGTATCTCTCTCTCTCTATCGATTCTTCTTA
CGTGGTTTGAGCTCCCCCCTCTGTATCTAGTATGTTTATACTCTGATCGT
GACTCATGGAATCAAAGGCCTGGTGGCGGAAGAGGCTGTCTATCCCACGC
GTTCCATTCAACTCGTACGGAAACACCGGACGGAGACTCTCGCGGCTGCT
GCGCCGGAACACTCTACTATATTGTTCTGTACGGTACTGTACTGTAGTTA
CGATCGACATTCGCCCGGTACGACGATAACTAATCGGAGAATCCAGTTCA
ATACAATTGCAGTGTATCTGATTACCACAATTGGGAAGGTTCCTATTACA
ACAGTTTGTACTGTCGTACCACCTTAAACCCGACGCCATGCGAGGTCCCA
CGCGTTCTCACCGCGATTGGTGTAAACACGGTGTGTGGATGCTCGAAGGG
ACTGAGAGTAAAGCGTTTTCAGAGTTATGAACAAAACTCCGAAAATCACC
GTACTGCAGAGGGGAGGGGAGTTGGAGGGGGGGAGTGAGACGCTCCCGAG
CTGTGTGCGCAATGAGGAAGGGGGTCGCAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig12024:167..3348-

>mRNA_H-elongata_contig12024.1562.1 ID=mRNA_H-elongata_contig12024.1562.1|Name=mRNA_H-elongata_contig12024.1562.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig12024:167..3348- (Himanthalia elongata Himel1 dioecious)
ATGCTTCTGCGAAAGATGTCCACGATGATACCACCTGATATATCTGGGCC
GAGTGTAGTGTCCAGGCGACCTATATCTATTGGTCAAGCAGGCAGTACCC
AGCGTTCCCTCGTGGCGGAGGACCCGGAATCGGAGAGGATCCCTGCCAGG
ATCGCCTGCGCTGCGTTCTCACTGTTTGCGCTTGGACTGATGCTTCTGCG
AAAGATGTCCACGATGATACCACCTGATATATCTGGGCCGAGTGTAGTGT
CCAGGCGACCTATATCTATTGGTCAAGCAGGCAGTACCCAGCGTTCCCTC
GTGGCGGAGGACCCGGAATCGGAGAGGATCCCTGCCAGGATCGCCTGCGC
TGCGTTCTCACTGTTTGCGCTTGGACTGATCTTGCTGTGCATGAGCGTAA
ATTTCTTCTCCAAAGGACACCCCGGGTCGCTAGCCTTCTTGCTCTTGGGA
ATCGTTGATCTTGCTGTGCATGAGCGTAAATTTCTTCTCCAAAGGACACC
CCGGGTCGCTAGCCTTCTTGCTCTTGGGAATCGTTGTTCTAATACCAGGA
GCCTACAGCAGCTTCCAGCTACTGGCTGCGTTCCGCCGATGGCCCGGTTA
CGACTTGGAAGATTTGCAGGCTCGAGGAGACTTTGTATAATTCTAATACC
AGGAGCCTACAGCAGCTTCCAGCTACTGGCTGCGTTCCGCCGATGGCCCG
GTTACGACTTGGAAGATTTGCAGGCTCGAGGAGACTTTGTATAA
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