mRNA_H-elongata_contig79659.15619.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79659.15619.1
Unique NamemRNA_H-elongata_contig79659.15619.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79659.15619.1 vs. uniprot
Match: A0A6H5KV70_9PHAE (Methyltransf_25 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV70_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.640e-39
Identity = 71/114 (62.28%), Postives = 80/114 (70.18%), Query Frame = 1 
Query:    1 AAMDALLVEKRDPWNPDAATVEQSHRMCSEISRVLTPGGVFMQLSFELEHFRRKLLLGEHVVA-------------GESPD------YGWDLTVHGVQREGGCFGYSLYLMRKR 285
            AAMDAL+V+K DPW+PD AT+EQSHRMC+E+SRVL  GGVF+QLSFE  HFRRK LLGEH  A             G S D      YGWDL VH +QREGGCFG  LYL+RKR
Sbjct:  205 AAMDALMVDKGDPWSPDRATIEQSHRMCAEVSRVLVSGGVFVQLSFEQVHFRRKFLLGEHPAAAGLLDARRQGEDEGHSNDGEGGGPYGWDLQVHDIQREGGCFGQFLYLLRKR 318
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BLAST of mRNA_H-elongata_contig79659.15619.1 vs. uniprot
Match: A0A7S2Y3W0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3W0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.880e-28
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    1 AAMDALLVEKRDPWNPDAATVEQSHRMCSEISRVLTPGGVFMQLSFELEHFRRKLLLGEHVVAGESPDYGWDLTVHGVQREGGCFGYSLYLMRKR 285
            AAMDAL+ E+ DPWNP++  V    RMCS ISRVL PGGV +Q+SF   HFRRK L+GEH     S +Y W      + REGGCFG+ LY+M+K+
Sbjct:   93 AAMDALMCEEGDPWNPNSEVVTSVSRMCSCISRVLRPGGVHLQISFAQPHFRRKYLMGEHC----SENYNWSFEYINLVREGGCFGHFLYIMKKQ 183
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BLAST of mRNA_H-elongata_contig79659.15619.1 vs. uniprot
Match: A0A1W0A6C7_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6C7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 8.900e-21
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    1 AAMDALLVEKRDPWNPDAATVEQSHRMCSEISRVLTPGGVFMQLSFELEHFRRKLLLGEHVVAGESPDYGWDLTVHGVQREGGCFGYSLYLMRKR 285
            AAMDAL+VE  D W+P    +  +H MCS I +VLTP G+F+Q+SF   HFR++ LLGE+    ES  YGW    H ++      GY  Y+M+K+
Sbjct:  121 AAMDALMVEGGDTWSPAEHLLASAHEMCSGIKKVLTPTGLFLQISFGQPHFRKRFLLGEYPQGDESSAYGWTYKYHNIEIG---LGYFFYVMQKK 212
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BLAST of mRNA_H-elongata_contig79659.15619.1 vs. uniprot
Match: A0A482S291_9ARCH (Class I SAM-dependent methyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S291_9ARCH)

HSP 1 Score: 85.1 bits (209), Expect = 4.100e-18
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:    1 AAMDALLVEKRDPWNPDAATVEQSHRMCSEISRVLTPGGVFMQLSFELEHFRRKLLLGEHVVA----------GESPDYGWDLTVHGVQREGGCFGYSLYLMRKR 285
            AAMDAL+V++ D W+PD + ++   +MC  IS+VL   G+ MQ+SF   HFR K L+G               G +  YGW L+   ++ EGGC    LY+M+K+
Sbjct:  124 AAMDALVVDEGDVWDPDLSVIDVVDKMCLGISKVLKSTGIHMQISFAQPHFRTKYLIGYRAEGVNSSPYQASTGLAARYGWSLSYETIENEGGCLNSFLYIMKKQ 228
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BLAST of mRNA_H-elongata_contig79659.15619.1 vs. uniprot
Match: A0A836CL89_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL89_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.180e-18
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:    1 AAMDALLVEKRDPWNPDAATVEQSHRMCSEISRVLTPGGVFMQLSFELEHFRRKLLLGEHVVAGESPDYGWDLTVHGVQREGGCFGYSLYLMRK 282
            AAMDA+   + D W+PD A ++  HRMC+ +SRVL PGG F+Q+SF   HFR   L G+ V  G S DYGW  +   +  EG    +  Y+M K
Sbjct:  139 AAMDAITTAEGDMWDPDPAVIDAVHRMCTGVSRVLVPGGTFVQISFVQPHFRLPYLTGKRV--GASVDYGWQCSKREI--EGKVMPHFCYIMHK 228
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BLAST of mRNA_H-elongata_contig79659.15619.1 vs. uniprot
Match: A0A6G0XDR0_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDR0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.960e-18
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:    1 AAMDALLVEKRDPWNPDAATVEQSHRMCSEISRVLTPGGVFMQLSFELEHFRRKLLLGEHVVAGESPDYGWDLTVHGVQREGGCFGYSLYLMRK 282
            AAMDAL+VE  D W+P    +  +H MCS I+ VL P G+F+Q+SF   HFR++ LLG+      S  YGW  T H +       GY  Y+++K
Sbjct:  123 AAMDALMVEGGDTWSPAQHLLASAHEMCSGITSVLVPTGLFVQISFGQPHFRKRFLLGDQPHENTSTQYGWTYTYHNISIG---LGYFFYVLQK 213
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BLAST of mRNA_H-elongata_contig79659.15619.1 vs. uniprot
Match: A0A7S3GQV7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQV7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.490e-15
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    1 AAMDALLVEKRDPWNPDAATVEQSHRMCSEISRVLTPG-GVFMQLSFELEHFRRKLLLGE-HVVA---------GESPDYGWDLTVHGVQREGGCFGYSLYLM 276
            AAMDAL+VE+ D W+P+ AT+E  H+M +E+ RVL PG G  +Q+SF   HFR K L+G  H  A         GES  Y W+L+   V +  G     +Y+M
Sbjct:  142 AAMDALVVEEGDVWDPEPATIEVVHKMSAEVRRVLKPGHGRHIQISFSQPHFRTKYLMGHRHTGADVSPYESCKGESDVYKWNLSYKTVNKGAGSLDMFMYVM 244
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BLAST of mRNA_H-elongata_contig79659.15619.1 vs. uniprot
Match: UPI0011C46C25 (EEF1A lysine methyltransferase 4 n=1 Tax=Calypte anna TaxID=9244 RepID=UPI0011C46C25)

HSP 1 Score: 69.3 bits (168), Expect = 5.340e-12
Identity = 37/95 (38.95%), Postives = 49/95 (51.58%), Query Frame = 1 
Query:    7 MDALLVEKRDPWNPDAATVEQSHRMCSEISRVLTPGGVFMQLSFELEHFRRKLLLGEHVVAGESPDYGWDL---TVHGVQREGGCFGYSLYLMRK 282
            +D L+VE+ DPWN         HR+ +E+SRVL PGG F+ ++F   HFR+     E         +GW L   T      + G F Y LYLMRK
Sbjct:  118 LDVLMVEETDPWNVSPQATAAMHRVLTEVSRVLRPGGCFISITFAQPHFRKPHYAQEA--------FGWSLRHVTCGDQDGDTGTFHYFLYLMRK 204
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BLAST of mRNA_H-elongata_contig79659.15619.1 vs. uniprot
Match: A0A0G4ETY9_VITBC (Methyltransf_25 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ETY9_VITBC)

HSP 1 Score: 68.9 bits (167), Expect = 6.000e-12
Identity = 40/110 (36.36%), Postives = 51/110 (46.36%), Query Frame = 1 
Query:    1 AAMDALLVEKRDPWNPDAATVEQSHRMCSEISRVLTPGGV--------FMQLSFELEHFRRKLLLGEHVVAGE-----------SPDYGWDLTVHGVQREGGCFGYSLYL 273
            AAMDAL+ E+ DPWNP+ + V+    MC  +  VL P           F+Q+SF   HFRR+ LLG H    E           S  Y W L    +  E G F   LY+
Sbjct:  116 AAMDALVCEEGDPWNPNESVVQSCDAMCRGVRHVLKPSSAGDPPSPSRFIQISFAQPHFRRRYLLGTHGRPREADKPNEEGLHVSEKYQWTLRHQDIVSESGAFNNFLYV 225
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BLAST of mRNA_H-elongata_contig79659.15619.1 vs. uniprot
Match: F0WBE4_9STRA (Uncharacterized protein AlNc14C51G3991 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBE4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.690e-11
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:    1 AAMDALLVEKRDPWNPDAATVEQSHRMCSEISRVLTPGGVFMQLSFELEHFRRKLLLGEHVVAGESPDYGWDLTVHGV 234
            AAMDA++V+  D WNP  A + Q+  MC+ I + L   GVF+Q+SF   HFR++ L+G+ +    +  Y W    H +
Sbjct:  358 AAMDAIMVDVADSWNPPEANISQAAAMCTSIHKALKETGVFIQISFAQPHFRKRFLMGDDLERSTNV-YSWTFDYHPI 434
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79659.15619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KV70_9PHAE2.640e-3962.28Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A7S2Y3W0_9STRA3.880e-2854.74Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1W0A6C7_9STRA8.900e-2145.26Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A482S291_9ARCH4.100e-1839.05Class I SAM-dependent methyltransferase n=1 Tax=ar... [more]
A0A836CL89_9STRA5.180e-1844.68S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A6G0XDR0_9STRA6.960e-1842.55Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A7S3GQV7_9STRA2.490e-1542.72Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI0011C46C255.340e-1238.95EEF1A lysine methyltransferase 4 n=1 Tax=Calypte a... [more]
A0A0G4ETY9_VITBC6.000e-1236.36Methyltransf_25 domain-containing protein n=1 Tax=... [more]
F0WBE4_9STRA2.690e-1138.46Uncharacterized protein AlNc14C51G3991 n=1 Tax=Alb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79659contigH-elongata_contig79659:208..609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue8.4e-32
Seed eggNOG ortholog2880.D7FJW5
Preferred nameECE2
KEGG koko:K01415
GOsGO:0000139,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006464,GO:0006479,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008233,GO:0008237,GO:0008276,GO:0008757,GO:0009987,GO:0010002,GO:0010467,GO:0010817,GO:0012505,GO:0012506,GO:0016020,GO:0016278,GO:0016279,GO:0016485,GO:0016486,GO:0016740,GO:0016741,GO:0016787,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0030133,GO:0030154,GO:0030658,GO:0030659,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032259,GO:0032501,GO:0032502,GO:0034641,GO:0035051,GO:0036211,GO:0042445,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0048863,GO:0048869,GO:0051604,GO:0060322,GO:0065007,GO:0065008,GO:0070011,GO:0071704,GO:0072359,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0140096,GO:1901564
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG2352@1,KOG2352@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-10_000720.1
EC3.4.24.71
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79659.15619.1prot_H-elongata_contig79659.15619.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79659 214..609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931201.4252293-UTR-H-elongata_contig79659:207..2131622931201.4252293-UTR-H-elongata_contig79659:207..213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79659 208..213 +
1691679739.2005398-UTR-H-elongata_contig79659:207..2131691679739.2005398-UTR-H-elongata_contig79659:207..213Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79659 208..213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931201.441755-CDS-H-elongata_contig79659:213..3951622931201.441755-CDS-H-elongata_contig79659:213..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79659 214..395 +
1691679739.213623-CDS-H-elongata_contig79659:213..3951691679739.213623-CDS-H-elongata_contig79659:213..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79659 214..395 +
1622931201.4629166-CDS-H-elongata_contig79659:482..6091622931201.4629166-CDS-H-elongata_contig79659:482..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79659 483..609 +
1691679739.222373-CDS-H-elongata_contig79659:482..6091691679739.222373-CDS-H-elongata_contig79659:482..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79659 483..609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79659.15619.1

>prot_H-elongata_contig79659.15619.1 ID=prot_H-elongata_contig79659.15619.1|Name=mRNA_H-elongata_contig79659.15619.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MDALLVEKRDPWNPDAATVEQSHRMCSEISRVLTPGGVFMQLSFELEHFR
RKLLLGEHVVAGESPDYGWDLTVHGVQREGGCFGYSLYLMRKRRREEVAG
NA*
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mRNA from alignment at H-elongata_contig79659:208..609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79659.15619.1 ID=mRNA_H-elongata_contig79659.15619.1|Name=mRNA_H-elongata_contig79659.15619.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at H-elongata_contig79659:208..609+ (Himanthalia elongata Himel1 dioecious)
GCGGCCATGGACGCGCTGTTGGTGGAGAAAAGAGACCCCTGGAACCCTGA
CGCGGCCACCGTCGAGCAGTCTCATCGCATGTGCTCGGAGATCTCAAGGG
TGCTGACTCCCGGGGGCGTTTTTATGCAGCTGTCGTTCGAGCTGGAACAC
TTCCGGCGAAAGCTTCTCCTCGGCGAGCACGTGGTGGCGTCATCCACCGG
CGCAATGGGCGGTCATCGGACGACACCGGTTCAGGCCCGTTCGGGGTGTG
GGAGCAGTGACGATGTGGCCTCCAGTGGTGAATCGCCGGATTACGGTTGG
GATCTTACCGTCCACGGTGTTCAGAGAGAAGGCGGGTGCTTCGGGTACTC
GCTGTACCTTATGCGAAAAAGGCGGCGGGAGGAGGTCGCGGGGAATGCAT
AA
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Coding sequence (CDS) from alignment at H-elongata_contig79659:208..609+

>mRNA_H-elongata_contig79659.15619.1 ID=mRNA_H-elongata_contig79659.15619.1|Name=mRNA_H-elongata_contig79659.15619.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig79659:208..609+ (Himanthalia elongata Himel1 dioecious)
ATGGACGCGCTGTTGGTGGAGAAAAGAGACCCCTGGAACCCTGACGCGGC
CACCGTCGAGCAGTCTCATCGCATGTGCTCGGAGATCTCAAGGGTGCTGA
CTCCCGGGGGCGTTTTTATGCAGCTGTCGTTCGAGCTGGAACACTTCCGG
CGAAAGCTTCTCCTCGGCGAGCACGTGGTGGCATGGACGCGCTGTTGGTG
GAGAAAAGAGACCCCTGGAACCCTGACGCGGCCACCGTCGAGCAGTCTCA
TCGCATGTGCTCGGAGATCTCAAGGGTGCTGACTCCCGGGGGCGTTTTTA
TGCAGCTGTCGTTCGAGCTGGAACACTTCCGGCGAAAGCTTCTCCTCGGC
GAGCACGTGGTGGCTGGTGAATCGCCGGATTACGGTTGGGATCTTACCGT
CCACGGTGTTCAGAGAGAAGGCGGGTGCTTCGGGTACTCGCTGTACCTTA
TGCGAAAAAGGCGGCGGGAGGAGGTCGCGGGGAATGCATAATGGTGAATC
GCCGGATTACGGTTGGGATCTTACCGTCCACGGTGTTCAGAGAGAAGGCG
GGTGCTTCGGGTACTCGCTGTACCTTATGCGAAAAAGGCGGCGGGAGGAG
GTCGCGGGGAATGCATAA
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